LOCUS MN379642 4939 bp DNA circular PHG 04-APR-2020
DEFINITION Chicken microvirus mg7_16, complete genome.
ACCESSION MN379642
VERSION MN379642.1
KEYWORDS .
SOURCE Chicken microvirus mg7_16
ORGANISM Chicken microvirus mg7_16
Viruses; Monodnaviria; Sangervirae; Phixviricota;
Malgrandaviricetes; Petitvirales; Microviridae; Microvirus.
REFERENCE 1 (bases 1 to 4939)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4939)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (26-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4939
/organism="Chicken microvirus mg7_16"
/mol_type="genomic DNA"
/isolate="mg7_16"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720924"
/country="USA"
/collection_date="2017"
CDS 1..1614
/note="similar to PHA00363"
/codon_start=1
/transl_table=11
/product="major capsid protein"
/protein_id="QIR82358.1"
/translation="MPSINKKTQHLFSRVPATDIPRSVFDRSHNVKTTFDSGYLVPFY
VDEVLPGDSFKADCSVFARLATPIVPIMDNLYLETFFFFVPTRLLWDHWQAMNGEQEN
PDDSTDYLVPTVSGTNVATTTLWDYFGLPTNVAKALTVSALPFRAYNLIYNEWFRDEN
LIDSVPFSKGDGPDKLTDYKLLRRGKRHDYFTSALPWPQKGPGVEISLGGFADLVPDT
DRKIKVVSGSAYPKGTQVPAGEVFGYLPSAGTDVMFQTQNSSKSSGSTGNLAPTYFES
IGLRADLSVASPITINDLREAFQLQRLYERDARGGTRYTEILRAHFGVVSPDARLQRP
EYLGGSSSRININPVVQNSQTTDVTPQGNLAAYGVAGDVFHGFTKSFVEHGYIIGLMN
VRADLTYQQGLNRMWSRRGRFDFYWPALAHLGEQAVLNKEIYAQGTDADDEVFGYQER
FAEYRYFPNQITGKFRSSDPQSLDVWHLAQDFASLPVLSEEFISDNPPVERVIAVQNE
PQFLVDTWMSLKCARPMPVYAVPGLIDHF"
CDS 1624..2229
/note="similar to PHA00327"
/codon_start=1
/transl_table=11
/product="DNA pilot protein"
/protein_id="QIR82355.1"
/translation="MSMDGWSYAIGAVADLTNTGLGLYQSSKAYRRAKEMYQHRYQWA
VDDMRKAGLNPVLAATGGGVSTGGLNAGQVGNTGNFGSNAVAAYKASQESELIKSQIE
ANQNSAAKDFSLMNLYNDQAGLTRAQEGFLLDTWDYGVKKAAAEASSAQSMSVMHGNS
AGASNLQYKYMKDNPSLRDAGNAFRLLNPANSASSLLSILK"
CDS 2496..3395
/note="similar to PHA00330"
/codon_start=1
/transl_table=11
/product="replication initiator protein"
/protein_id="QIR82354.1"
/translation="MTCYHPLKGWRALQANPSGKHSIIFNFSHETCNPFCEVEVPCGQ
CIGCRLDRSRIWAARCVNEASLHDQNCFITLTYAPEFLPKDGSLNTVDIQGFFKRLRR
RIEPRQVRYFQCGEYGSLLSRPHHHAILFGFDFPDKKLFQVRDGLRLYVSKMLSELWP
FGYSTIGDVTFESCAYVARYITKKVTGELAEEHYEGRKPEYITMSRRPGIGRDWLEKY
LSDVYPEDALIIRDGIKMKPPRYYDAIYDTIDPDAFALIKRKRMEKLQLINPEEFSYE
RLQVKEACKYLSTLKLPRTLEGQ"
CDS 3397..3654
/note="Simialr to PHA00198"
/codon_start=1
/transl_table=11
/product="nonstructural protein"
/protein_id="QIR82359.1"
/translation="MRVFSVYDKVLGEYMTPFFAKNVGLALRSFQDLVRDNRSVVAQH
PADFVLYQIGSFDGTSGALVPCEPQHVANAIDFVPPEVKNA"
CDS 3647..4090
/note="similar to PHA00099"
/codon_start=1
/transl_table=11
/product="internal scaffolding protein"
/protein_id="QIR82357.1"
/translation="MPEIRSRYSPRVRVPFDFHQPSRTQQHFKDECAIDRILKKYSAT
GFLVDPLAPRRDPLFGDFSESISFMEAQTRIARVREAFDSLPSQIRDRFANDPYRLLA
WCEDPDNAEEAVKLGLLPESALPKADPAPAEPAKPVEVDKTAKVE"
CDS 4120..4410
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82356.1"
/translation="MFKPFAISRSSWVSISIFVEPLSDVRFVGRRKETFVRVRFFTHG
FDKTEFFWVPSRITREHFVRDFIEDRAKSILSELDDREEDRFWNCDPDSQES"
ORIGIN
1 atgccttcga ttaacaagaa aacgcagcac cttttttctc gggttcccgc aaccgatatc
61 ccccgctcgg tcttcgaccg ttcacataac gtgaaaacca cgttcgattc cggttacttg
121 gtccccttct atgtggatga agttctccct ggcgattctt tcaaggccga ttgttcggtt
181 tttgcccgtc ttgctacgcc gatcgtcccg atcatggaca atctgtattt ggaaaccttc
241 tttttcttcg tgcctacccg tctcctttgg gatcactggc aggcaatgaa cggagagcag
301 gaaaaccctg acgatagcac ggattatctg gttccgacgg tttccggtac gaatgtcgct
361 acgactaccc tttgggacta cttcggtctt cctaccaacg tcgctaaggc cttgacggtt
421 tccgcgcttc ctttccgcgc ctacaacttg atctataacg agtggtttag agacgaaaac
481 ttgattgatt cggttccctt ctctaagggt gacggccccg acaagctcac ggattacaaa
541 cttttgcgcc gtggcaagcg tcatgactat ttcacttcgg ccttgccttg gcctcagaaa
601 ggtcctggcg ttgaaatttc gctaggcggt tttgctgatt tggttcctga tacggatcga
661 aagattaagg ttgttagcgg ttcggcttat ccgaaaggta ctcaagttcc agctggcgaa
721 gttttcggtt atttgccttc ggctggtacc gatgtcatgt ttcaaactca gaactcttcg
781 aaaagttctg gtagtactgg caatcttgcc cctacttatt tcgaatcgat tggtttgcgt
841 gctgacctca gtgttgcttc cccgattacg attaacgatc ttagggaggc attccagctc
901 cagcgcctct acgagcgtga tgctcgcggc ggtacgcgtt acacggaaat tcttcgcgcg
961 catttcggcg ttgtaagccc cgatgctcgc ctccaacgcc ccgaatacct cggcggttcg
1021 tccagtcgaa tcaacattaa ccctgtggtt cagaatagcc aaacgacgga tgttacccct
1081 cagggtaatc tcgccgctta cggtgttgct ggtgatgtgt tccacggttt cacgaagtcg
1141 ttcgttgaac atggctacat catcggcctg atgaatgtcc gcgctgattt gacgtatcag
1201 caaggtctta acagaatgtg gagccgccgc ggccgcttcg atttctactg gcccgccctg
1261 gcacatcttg gtgaacaagc cgtcctgaac aaggaaatct atgctcaagg cactgacgcg
1321 gatgatgaag tttttggtta tcaggaacgt tttgcagagt atcgctactt cccgaatcag
1381 atcaccggaa aattccgcag ttccgatcct cagtccctcg atgtctggca tcttgcgcag
1441 gatttcgcaa gtcttcctgt tctctctgaa gagttcatct cggacaaccc ccctgtcgaa
1501 agagtaattg ctgttcagaa tgagcctcag ttcttggtcg atacgtggat gtctctgaag
1561 tgtgcccgtc ccatgcccgt ttatgcggtg cctggtctca ttgaccattt ctaaggtgaa
1621 tttatgtcaa tggatggatg gtcttatgcc ataggtgccg ttgctgactt gacgaacacg
1681 ggtcttggtc tgtatcaaag ttccaaggcc tatagacgcg ctaaggagat gtaccaacat
1741 cggtaccaat gggcagtcga tgacatgcga aaggcaggtc ttaatcccgt gcttgcagcc
1801 actggcggcg gcgtcagcac gggaggccta aatgccggtc aagttggaaa cactggaaat
1861 tttggttcta atgcggttgc cgcttataaa gcttcgcagg aatctgaact cattaagtcg
1921 cagattgaag ccaatcaaaa ttcggccgcc aaggatttca gcctaatgaa tctgtacaac
1981 gatcaggctg gtctaactcg tgcccaggaa ggttttttgc ttgatacttg ggattacggt
2041 gtgaagaagg ccgctgccga agcttcatcc gctcaatcta tgtcggttat gcatggcaac
2101 tctgcaggtg cttccaatct gcaatataag tacatgaaag acaatccgtc tcttcgtgat
2161 gctggtaatg catttcgcct tttgaaccct gcgaactccg ccagttcgct tttgtctatt
2221 ctcaaatgat cgacacaatc gttaagtttg tgcagacgct actcactgga tgttctgcta
2281 tctgggaggc ctttaaggcc gtcaaaaatc ttttcaaagg aaagaaaaat ggctaaacgt
2341 cgaaagctta tgaaaaagca gtctaaaaag attttttcga agggcgcttc gaaaacgaag
2401 gccctgaatc tccgtgctac gcctatgcgt ggcggtttcc gtatctaaaa aaaaggcccg
2461 cggaatgcgg gccaagagac gtcaaggaat gacttatgac atgttatcac cctttgaaag
2521 gctggcgtgc ccttcaagcc aatccaagtg gtaaacactc gattatcttt aattttagtc
2581 atgaaacttg caatcctttc tgcgaggttg aggttccatg cggtcagtgc atcggctgtc
2641 gtctagatcg ttcccgcatc tgggccgctc gttgtgtgaa cgaagcgtct ttgcatgatc
2701 agaactgttt catcactttg acttacgcac ccgagtttct ccctaaagat ggttctttga
2761 acacggtaga cattcaaggc ttctttaagc gtcttcgtcg tcggattgaa ccacgccagg
2821 tgcgctactt tcagtgtggt gagtatggat ctttgctttc tcggcctcat catcacgcta
2881 ttcttttcgg ctttgatttt cctgataaga agctttttca ggttcgtgac ggtttgcgcc
2941 tctatgtttc taaaatgctc tccgagcttt ggccgtttgg ctattcgacc attggagatg
3001 ttacttttga atcttgtgcc tacgttgccc gatacatcac caaaaaggta actggagagt
3061 tggctgagga acattatgaa ggtcgtaaac ctgagtacat tacgatgagc cgtcgtcctg
3121 gtatcggccg tgactggctc gagaagtatc tttcggatgt ctatccagag gatgcactca
3181 ttattcgtga cggtatcaag atgaagccgc ctcgctacta tgatgctatc tacgatacaa
3241 tcgatcctga cgctttcgcg ctaatcaaac gaaagcggat ggaaaaactt cagctgatta
3301 accctgagga gttctcctac gagcgtctcc aggtcaaaga agcctgcaag tatctttcta
3361 ctttgaaact cccccgtaca ctagaaggtc agtaatatgc gcgttttttc tgtctacgat
3421 aaagttctcg gcgagtacat gacgcccttc tttgcgaaga atgtaggcct cgccctccgt
3481 tctttccagg atctcgttcg cgacaatcgt tccgttgtcg cccagcatcc cgctgatttc
3541 gttctctatc agatcggctc ctttgatggc acttccggtg ctttggttcc ttgtgagcct
3601 cagcatgtcg ctaatgcaat cgacttcgtc cctcccgagg taaaaaatgc ctgaaattcg
3661 ctctcgctac agcccgcgcg ttcgtgtgcc gtttgatttc catcagccgt cgcgtacgca
3721 acagcatttc aaggatgaat gcgctatcga tcggatactc aaaaagtact ccgctacggg
3781 ttttctggtg gatcctctcg cgcctcgtcg tgatcctctc ttcggcgatt tttcggaatc
3841 gataagtttt atggaagccc aaacgcgtat tgcgcgcgtc cgtgaggctt tcgattctct
3901 tccttcgcag attcgcgacc gctttgcaaa cgatccttac cgtttgcttg cctggtgtga
3961 ggacccagat aatgcagagg aagctgtaaa gcttggtttg ctccccgaat ctgcgctgcc
4021 aaaggcagat cctgctcctg cagaacctgc taaacctgtt gaagttgaca aaactgctaa
4081 agtggagtaa actaccctta gttaataagg aggttctcca tgttcaagcc gtttgccatc
4141 tctcgctctt cttgggtctc catttcaatt tttgtggaac ctttgtctga tgttcgtttt
4201 gtcggtcgtc gtaaggaaac ttttgtcaga gttcggtttt ttacgcatgg ttttgataaa
4261 acggaatttt tttgggttcc ttcccgaatc actcgtgagc atttcgttcg tgatttcata
4321 gaagatcgtg cgaaatcgat tctttctgaa ttggatgatc gtgaagaaga tcgcttctgg
4381 aattgcgatc cggacagtca agagagctaa ggtcagaaga aacccccggg gcttgccctg
4441 ggggtttttt cttggccgtg cgaccttgac ggtcccgact ccctaacgct ctgctcggag
4501 agcagggaaa gcccgaaggg cgcccccctg ctcccgagcc cctcggcggc gagagcgggg
4561 ggacttgggg ggcagagccc cccttgtgcc gcccaaaagc gcggagcgaa gatcgcccgt
4621 cgtggccgtc ttcgacccct cggcttttgg ctggctcgaa gagacagccg aaagcctagg
4681 ggacgatgac ggttcacggc gggaagctga gccgcgcggg cggcatccca agagaaaaac
4741 cctcttgaaa aacaccagct gaaagcggtt caggctcccc tcggaagacc acgggggagg
4801 tccgcacagt tacctcactt gatgtaactg tgcggactga cacctttgca catcgattgt
4861 gcaaaggggt caccttaaca gtggtaaact gattccgttg gcccctgtgt gggccgtggt
4921 taacctctta tttgaagtc
//
