LOCUS MN379643 4877 bp DNA circular PHG 04-APR-2020
DEFINITION Chicken microvirus mg7_19, complete genome.
ACCESSION MN379643
VERSION MN379643.1
KEYWORDS .
SOURCE Chicken microvirus mg7_19
ORGANISM Chicken microvirus mg7_19
Viruses; Monodnaviria; Sangervirae; Phixviricota;
Malgrandaviricetes; Petitvirales; Microviridae; Microvirus.
REFERENCE 1 (bases 1 to 4877)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4877)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (26-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4877
/organism="Chicken microvirus mg7_19"
/mol_type="genomic DNA"
/isolate="mg7_19"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720925"
/country="USA"
/collection_date="2017"
CDS 1..1914
/note="similar to PHA00363"
/codon_start=1
/transl_table=11
/product="major capsid protein"
/protein_id="QIR82363.1"
/translation="MKRSKFNLTHLHSTTGEAGFLIPFFLQSTLPGDRYRLSLTSFIR
AQPMLAPLMHQVKFYTQYWFVPYRILWENWEEFITGGQDLTYAPDFPFVTSPAGGWKA
GSLADYFGFPIEQEGIEVSAMPFRAMAEIWNTRYRDEDIQSEVNISYSDGKDTLTSTA
LLSPSWKRDYFTTARPFTQRGSDVSVPVYPSKSPTTYHRHGYTLSFEYWGTGYNQNPS
VKIWADTTPPDGTGAPRYQSTNWQSIVRDRMPNGTASVIGHVCNALMVSGKLDDYYPT
QTENKGSTLITFDGTGTNEPLLNFVATYSTEEGNHGQIYYTRVEVSNFPLTVHWRFTS
DTVGTGASWQFSNITNEQKMSLLADSFNPGNYPNAFHQANRSILSDLPFYFQVSGQGI
VQIRDLRASSALQRYAERSLQWGNRYEEFIQREFGIKPRDSRIQRPEYLGGGSGNLQI
SEVLQTAEGQDTGVGTMRGHAVAGVGQRPIKFTCPEHGLIIGLISIRPVPVYTQGIER
EFLKRSRLDFFTPELANIGMQEVLQQELYATASNKDVIFGYSDRYQEYRYRKPMVTGQ
FRTDFAFWNMARQFSQPPTLNPDFLNMSKSSASFKRPFAVQSDATHSFLMMLRNNVRA
WRPIPKRAKNILR"
CDS 1926..2384
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82361.1"
/translation="MPCFSEKVLANKVKAGWTETLDTTPLFVPTGMQRPETSKQTMAR
LMLESGVISRDDYDKMLGVEFDTSDDGVLSFDFDDDFDVDFDAERFTQTSLAEYEEAL
DFKNTQSKEDVAQESEAIAQEAIASGARKEDLQNGTENDHKSPDTANASE"
CDS 2332..2715
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82362.1"
/translation="MARKTTTNRLIRQTQANSLRHSGHPLTYVRYLTGSRLSAFSGNF
RNDKTARVSSQSGARFWNKSSTPLEYLGVRSVERVQASLKRDVDRQTRICNHRKERRE
VLFAKGKVGGRHKPPTYTINSLVRC"
CDS 2716..3543
/note="similar to PHA00327"
/codon_start=1
/transl_table=11
/product="DNA pilot protein"
/protein_id="QIR82360.1"
/translation="MADPVSTAGVLGAGAISAGGGLLGSVVNSVLGNKASKADWQRNY
NAQKEFAQNSIQWRVQDAQKAGINPLYAMGNSPGYTPSSSFNNESIGVGIAQAGNAMA
EAMGQLQMMQLLSNIENTKADTAKKEAEASVTLGQSPKVIPPVTKTTSPKKAEVTMAP
NIQYLNNFARYGDGFIGYPSEDLLDASSEASIFNPLSLPVAIDAFDAQYRSMPEHFQR
SIEYAIPGADKWISNVSAERSWSSYGRPVYKVHWKKGTPQKIRDMYNSLLNRARSAR"
CDS 3820..4698
/note="similar to PHA00330"
/codon_start=1
/transl_table=11
/product="replication initiator protein"
/protein_id="QIR82364.1"
/translation="MKCEHPYMKYEPSVDSIVPFPCGHCYACRSAQARVWVLRNFLES
QMHDNFAFVTLTYDNQHLPTGSNLESSAISSFMKRLRYYLPYKVRYYGCGEYGEKRGR
PHYHLLIFGLKENDYVYVNQAWNKGRVDVQTPRDPVKSIAYTATYVTKKIGKIDAWCK
SNRRQVAPFQRCSLSLGLDFALKHIPLFTTRLRVFGKVWYVGRYLRNKLAEKFSVLEE
IKQAGLQMLSVEMEDVLTRFFTETSGKFVNHLGREVAYKLYSRETALVAWKHCYNGDF
ELQKARSKLFSRDRFG"
ORIGIN
1 atgaaacgaa gtaaattcaa tctcacacat ttgcattcta cgactggcga agctggcttt
61 cttatcccct ttttcttgca atccacactc cccggtgacc gttatcgcct ctctctcact
121 tcttttatcc gtgctcagcc tatgcttgcc ccgttaatgc accaagtgaa gttctacaca
181 cagtattggt ttgttccgta tcgtattctt tgggagaact gggaagaatt tatcactgga
241 ggtcaagatt tgacttatgc tccggatttt cctttcgtta cttctcctgc tggaggttgg
301 aaagctggta gtcttgccga ttactttggc ttccctattg aacaggaagg tattgaagta
361 tctgctatgc cattccgtgc tatggctgag atttggaaca cccgttatag agatgaggat
421 attcagtctg aagtaaatat ttcttacagt gatggcaaag atacacttac ttctaccgct
481 ttgctttcgc cctcttggaa aagagactat ttcacaactg cccgtccatt cacacaacgt
541 ggttctgatg ttagtgttcc agtttatcct agcaaaagtc ctaccactta tcataggcac
601 ggttatactt tatcttttga atattggggt actggttata atcaaaatcc tagtgttaag
661 atttgggctg atactactcc tcctgatgga actggtgctc ctcggtatca gagcactaat
721 tggcaatcta tcgttaggga tagaatgcct aatggcactg cttctgttat tgggcatgtt
781 tgtaacgctc ttatggttag tggtaagctc gacgattatt atcctacaca gactgaaaat
841 aaaggctcca cgcttattac ttttgatggt actggtacta atgagccttt attaaatttt
901 gttgcgactt attctactga agaaggtaac catggacaaa tttattatac tcgtgttgaa
961 gtctctaact ttcctttgac cgttcattgg agatttactt ctgatactgt aggaactggt
1021 gctagttggc aattttcgaa tattaccaat gaacaaaaaa tgtctttatt ggctgatagt
1081 tttaatcctg gaaactatcc caatgctttt catcaggcta atcgtagtat tttgtctgat
1141 ttgccattct attttcaggt ctccggccaa ggtattgtcc aaatccgcga tttgcgcgct
1201 agttccgcat tgcaacgcta cgctgaacgt tcgctccaat ggggtaaccg ctatgaggaa
1261 ttcattcaac gtgaatttgg cattaagcct cgagattctc gtattcaacg ccctgagtat
1321 ttaggcggtg gttctggaaa ccttcaaatt tccgaagtgc tacaaactgc tgaaggtcaa
1381 gataccggtg ttggaactat gagaggccac gctgttgctg gtgttggaca acgcccgatt
1441 aaattcactt gtcccgagca cggtttgatt ataggtttga tttccattcg ccccgttccc
1501 gtctatactc aagggattga acgtgagttt cttaagcgtt ctcgtttgga ctttttcacg
1561 cctgaattgg ctaacattgg tatgcaggaa gtcttgcaac aagagctcta tgctacggct
1621 agcaataaag atgtgatttt tggttactct gatagatatc aggaatatcg ctatcgtaag
1681 cctatggtta ctggtcagtt cagaaccgat tttgcatttt ggaatatggc acgacaattt
1741 agccaacctc ctacgcttaa tccagatttt ctgaatatgt ctaagtctag tgcttctttt
1801 aagcgtcctt ttgctgttca gtctgacgct acacattctt ttttaatgat gttgcgtaac
1861 aatgtgagag cttggcgacc tattcctaag cgagctaaga atattttaag gtaaggaggt
1921 atattatgcc gtgtttttcc gaaaaagtat tagcaaataa agttaaagct ggttggactg
1981 aaactttgga tactactcca cttttcgttc ctactggtat gcaaagacca gagacttcta
2041 agcaaactat ggcgcgtttg atgttagagt ctggcgtgat ttctcgtgat gattacgata
2101 aaatgttagg agtggagttt gatactagcg atgatggcgt acttagcttt gattttgacg
2161 atgattttga tgttgatttt gacgcggaac gcttcactca aacatcgctc gcggaatacg
2221 aagaagctct cgattttaag aacactcaga gcaaagagga tgtggcgcaa gaaagcgaag
2281 cgattgcgca agaggcgata gcctctggag ctcggaagga ggatttgcaa aatggcacgg
2341 aaaacgacca caaatcgcct gatacggcaa acgcaagcga atagcttgcg ccatagcgga
2401 catcccttga cttatgtccg ctatctgaca ggctcccgcc tgtcagcctt ttctggtaat
2461 tttagaaacg ataaaacagc acgcgtaagc tcgcaaagcg gtgctcgttt ttggaataaa
2521 tcatctactc cattagagta tttgggcgtt cgctctgtcg aacgcgttca agcttctcta
2581 aaacgtgatg tggatagaca aactagaatt tgtaatcatc gtaaagaacg ccgtgaagtg
2641 ctttttgcca aaggcaaagt tggtggtcgt cataaacctc cgacttatac gataaattct
2701 cttgtgaggt gttaaatggc tgaccctgta tcgactgctg gtgttttagg cgctggtgct
2761 atctctgctg gcggtggtct tttaggttct gtggttaatt ctgttctcgg caataaagcc
2821 tctaaggccg attggcaaag gaattacaat gcacaaaaag aattcgcgca aaactcaatc
2881 caatggcgag tgcaagacgc tcaaaaagct ggtatcaatc ctctttatgc tatgggtaat
2941 tcccccggtt acactcctag ctctagcttc aataatgagt ctattggagt tggaatagct
3001 caagctggta atgctatggc tgaggcaatg ggacaattgc aaatgatgca acttctttca
3061 aatattgaaa acactaaagc cgacacggca aagaaagaag ctgaagcttc ggtcacatta
3121 ggtcaatctc ctaaggtaat tcctcccgtg actaaaacga cttctcccaa aaaagccgaa
3181 gttacaatgg ctcccaatat tcagtatttg aacaatttcg cccgttacgg tgatggcttc
3241 attggttacc ctagcgaaga tttgcttgac gcttcttctg aagctagcat ttttaatccg
3301 ttgtcgttgc ctgttgctat tgatgcattt gacgctcaat atcgctcaat gcctgagcat
3361 tttcagcgct ccatagagta tgctattccc ggtgctgaca aatggatttc taatgtaagc
3421 gcggagcgct cttggtcgtc ctatggacgc cctgtgtata aagtgcattg gaaaaaaggc
3481 acaccgcaaa agattcgcga tatgtataat tctttgctaa atcgcgctag gtctgcgcgt
3541 taatcttgtg aaaggaggtt aatatgaaag aaaaagtcat aatgtggctt ggttggattg
3601 ttgctgcttg tgaagcggtc gttaattttt taggaactgt ttaaggaggt tttatggcat
3661 ttcgttggta taaacgtcgt tttaagcgct ggcgtaaaag gtataaaaaa gcgtttcgaa
3721 ggaaatttaa gcgtcgtctt aagcttagat tccgccgtaa attcaggagg agacttcgcc
3781 ggattggtta ccggatgtag taactgttag gaggttaaaa tgaagtgcga acacccatat
3841 atgaagtatg agcccagtgt agattcgatt gtgccgtttc cttgcggtca ttgctatgct
3901 tgtcgttctg cacaagcgcg tgtttgggtt ttgaggaatt tccttgaatc tcaaatgcac
3961 gacaatttcg cgtttgtaac tttaacctat gataatcagc atttgcccac aggttctaat
4021 ttggaatcta gtgctatatc gtcttttatg aagcggttaa gatactatct gccatataaa
4081 gtgcgatatt atggctgtgg cgagtatggt gagaagcgcg gtcgtccgca ttatcatcta
4141 ctcatatttg gtttaaagga gaatgactat gtttatgtta atcaagcttg gaataaaggt
4201 cgtgtcgatg ttcaaacacc tcgtgaccct gttaaaagta tcgcatatac tgctacgtat
4261 gttacgaaaa aaattgggaa aatagatgct tggtgtaaaa gtaataggcg acaggttgct
4321 ccgtttcagc gttgctctct ttctcttggt cttgattttg cattaaagca tattcctctt
4381 tttaccacgc gacttcgcgt ctttgggaaa gtttggtatg ttggacgtta tctccgaaac
4441 aaacttgccg aaaaattctc cgttctcgag gagattaaac aagctgggtt acaaatgcta
4501 tctgttgaga tggaagatgt tttaacgcgt tttttcactg agactagcgg taaatttgta
4561 aatcatcttg gacgcgaggt cgcttataaa ctttattcga gagagacggc gttagtcgct
4621 tggaaacatt gctacaatgg cgactttgaa ttgcagaaag cgcgttctaa gttattttcg
4681 cgcgatagat ttggttaaag gatattctat gagaaaatta ccacctgaag ttgataaggc
4741 tttagataac atcattcttg ctctttctac atttgtcgag agcacttatg aggattctga
4801 agttgatgaa gtcgatttgg cacttgccaa aaaagatttt tttgttgcta tgatgtattt
4861 atttggagga gataaca
//
