LOCUS MN379644 4722 bp DNA circular PHG 04-APR-2020
DEFINITION Chicken microvirus mg7_20, complete genome.
ACCESSION MN379644
VERSION MN379644.1
KEYWORDS .
SOURCE Chicken microvirus mg7_20
ORGANISM Chicken microvirus mg7_20
Viruses; Monodnaviria; Sangervirae; Phixviricota;
Malgrandaviricetes; Petitvirales; Microviridae; Microvirus.
REFERENCE 1 (bases 1 to 4722)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4722)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (26-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4722
/organism="Chicken microvirus mg7_20"
/mol_type="genomic DNA"
/isolate="mg7_20"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720926"
/country="USA"
/collection_date="2017"
CDS join(3890..4722,1..4)
/note="similar to PHA00330"
/codon_start=1
/transl_table=11
/product="replication initiator protein"
/protein_id="QIR82369.1"
/translation="MLESYYHEKACFCTLTYDADHIPLSSHGLPVLDKREVQLWIKRL
RKLFSDRTIRFYLCGEYGKQSFRPHYHAILFGVDASELDPEWLIWKGQSGPATNTRLA
RLNTPLYRTWSKGIVHVGEFNRKTVQYVAGYVLKKLVKVDRRTGVVLPNILEDGTVEE
HSDERVPEFGLMSRRPGLGFRAVEDIKKSLLHFSSVDDFRRELRVDGKLWPLGRFLLD
KLQICLEKEFDSASYLSTLTTTLVESEKTGRDFLELLVEQDSGKAALLESKQKLFPRC
TL"
CDS 1..1701
/note="similar to PHA00363"
/codon_start=1
/transl_table=11
/product="major capsid protein"
/protein_id="QIR82368.1"
/translation="MKKRAKFNLSNFHNCTFKMGFAYPVNLIEALPGDIFQLNSSVFL
RLAPMVSPVMHPVHMSMYHFFVPSRILGPFLDFDFEDFITGGPNGTDTQTIPQITLTA
SNSPVGGLADAFGVPVQMLTNTQNSISVNALPFAAYYMIWNEYFRDQDLSTEFDLSTL
SGSPDSLPLLRPAWAKDYFTTARPWPQKGPDVTIPIAGDPSMTVGYKPSGTGVTVKNP
LTGQPINAADSGYPMQMGNWTWDAGSSGGSASPEEIVGYPLGMPTPTFSPDKQGLQLW
QSPSSQLMYAFVEPKSSGPTGGTEIGGTAGAAAFDFDVSGSLKITGSNVGYLSVDHVR
QGFALQRMQEHRATFGSRYEDYLRFLGIRPQDARLQLPEYLGGFSAPIQFSEVLQTSA
GENGGVGDLYGHGIGAGRGRRVRCFIPENGYIMSLLVVRPIPVYAQGLERLWSKKTRT
DFWQKEFEHIGQQEVLNSEVYANGTTDDAVTFGYQNRYDEYRRGVNIITGEFRTTQDY
WTMARIFANRPALNQDFITCMPTDRIFQVGEQNSDQVYCMIKNSVVARRIISKNGNPI
"
CDS 1714..2091
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82366.1"
/translation="MAVLDSRGHEVVSSKRVEVPFIQTSSRLDIFSIYQSMIARQKME
MDDQIADDADVIEDMNDFSSPEDYAPGMPVTGDTVYTVPDSVPDGFSAEEYRTLQAEA
KAKADAQAKPDSNVSESTSVSDS"
CDS 2411..2698
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82367.1"
/translation="MPFMTKTQGCGNIVVKMVRLRKKDGTSIVTLHCGNQECGRRCGM
SFEIPSVLWYVSEEKLAGLLFSHCIELERLVQETALHDGLSTVELCVNAKE"
CDS 2703..3569
/note="similar to PHA00327"
/codon_start=1
/transl_table=11
/product="DNA pilot protein"
/protein_id="QIR82365.1"
/translation="MGLFDGLAGSVVGAVGSLIGGGISSSNASSMAADNYRAQREFAQ
NGIRWRVADAKAAGVHPLFALGASGAQFSPVQAYTGDYGISDAASKFGQGIDRAAQAK
MTKQERDRLTVREALADAAMLEDIKQKGERHRAELGLIRSEIARNMASSRMALANSVR
VPAMPTVGYSGSVIPGQGDSYATGQTEREVSTVPTSEKGKPSVQAGTPPDVRFYRTST
GRTPLPTEEAADAIDAAFGAGIQWSLRNNLLPYLANFFPINDPHRREGEYYDLIFGQY
RKGKRIRDYFGY"
ORIGIN
1 atgaaaaagc gcgcaaagtt caacttgagc aatttccaca actgcacttt caagatgggc
61 ttcgcctacc ctgtaaatct cattgaggct cttcctggtg acatttttca gttgaacagc
121 agtgtttttc ttcggttggc tccgatggtt tcacctgtga tgcatcctgt tcatatgtcg
181 atgtatcact tctttgtgcc ttccagaatc cttggtcctt ttctggactt tgattttgaa
241 gattttatta ccggtgggcc taatggaact gatacgcaga caatccctca gattacgctg
301 acggctagca atagccctgt gggtggcttg gctgacgcat ttggcgttcc cgtccaaatg
361 ctgacaaata cacaaaattc catttctgtt aatgcactgc cctttgctgc gtattatatg
421 atctggaatg aatattttag ggaccaggac ctctctactg agtttgacct ttctactctt
481 tccggttcac ccgatagcct tccacttctt cggcctgcct gggcgaagga ctattttaca
541 acggctcggc cttggcctca gaaaggccct gacgtcacca ttcctattgc tggtgatcct
601 tccatgacag tcggctataa gccttctggt acaggtgtta ctgtcaagaa tccacttacc
661 ggtcagccca tcaatgccgc cgactctggc tatcctatgc aaatgggtaa ttggacgtgg
721 gacgctggct cttctggcgg ttctgcctct cctgaggaga ttgtaggcta tcctcttggg
781 atgcctacgc ctactttttc gcctgataag cagggcttgc agctctggca gtcgccttca
841 tcgcaactta tgtatgcctt cgttgagccg aagtcttctg gtccaaccgg tggtactgaa
901 atcggtggaa ctgctggtgc tgccgctttc gattttgatg tctccggctc tctcaagatt
961 accggttcta atgtcggcta tctttcggtt gaccatgtgc gacaaggctt tgccttgcag
1021 cgcatgcagg agcatcgcgc cacttttggt tctcgttatg aggactatct gcgtttcctt
1081 ggtattcgtc ctcaggatgc aagattacag cttccggaat atcttggcgg cttcagcgct
1141 cccatccaat tttctgaggt tctgcagacg tctgccggtg aaaatggtgg cgtaggtgac
1201 ttgtacggac atggcattgg agctggacgc ggtcgtcgtg tacgctgctt tatccctgag
1261 aacggctaca tcatgtcgct tttggttgtt cgtcctatcc ctgtgtacgc tcagggtctt
1321 gagcgccttt ggagcaagaa gactcggacg gatttctggc aaaaagaatt tgaacacatc
1381 ggtcagcaag aagtgctcaa ttccgaagtt tacgctaatg gcaccactga cgatgcggtg
1441 actttcggtt atcaaaaccg ctatgatgag taccggagag gcgtcaacat cattaccggc
1501 gaatttcgta ccactcagga ttattggaca atggcgagaa tcttcgccaa tcgtcctgcc
1561 ttgaatcagg atttcataac gtgcatgcca accgatcgca ttttccaagt tggtgagcaa
1621 aatagtgatc aggtctattg catgatcaaa aacagtgttg ttgctcgccg gattatttcc
1681 aaaaatggca atcctatcta aggaggtttt tctatggcag ttcttgattc tcgtggtcac
1741 gaggtggttt caagcaagcg tgtcgaggtt ccttttattc agacctcctc ccgtcttgac
1801 atcttttcca tttatcagag tatgattgct cgccaaaaga tggaaatgga tgaccagatc
1861 gcagatgatg cggatgtgat tgaggatatg aatgactttt cctctccgga ggattacgcg
1921 cctggaatgc ctgttactgg tgatacggtg tatactgtcc ctgattctgt tccggacggt
1981 ttttccgctg aggaatatcg tactcttcag gcagaggcaa aggcaaaggc agatgctcag
2041 gcaaagcctg attccaatgt ttcggaatcg acatcagttt ccgattctta ataacagcgc
2101 ctgcaagccg tgtggcctat cctggccacg cggcgccgta ggcttactca gcatagtacc
2161 ttctcgttgt gtactatgct gagtgacacc gaggcagttt tgtcgaagcg taataagcaa
2221 aaaagtaata gaagccctct ttcttctcct gtaaaaaact ctatagagca acgtggaact
2281 gctccacaaa tgcgcgatgc ccttgggcat cgctcgcgcc ttttggcgcg gcgttttgtg
2341 aaggatgatt ctcttttgcg ttccttgaga acgcttcata gacttgaaac ggaggatttg
2401 agacgtgaga atgcctttta tgacgaaaac ccagggttgc ggcaatatcg ttgtgaagat
2461 ggttcggttg cgcaaaaagg atgggacttc tatcgtaacc ctacattgcg gcaatcagga
2521 gtgcggccgc cgctgcggta tgtctttcga gattccaagc gtgctttggt atgtatcaga
2581 agaaaagctc gccggtctgt tattttcgca ctgcatcgag ctggaaaggc tggtgcaaga
2641 aaccgccctg cacgatggac tgagcacagt cgaattgtgt gtaaacgcta aggaatgatg
2701 atatgggtct tttcgatgga ttagccggtt ctgttgtcgg cgctgttggg tctttgattg
2761 gtggtggcat ttcttcttca aatgcctctt ctatggcagc tgataattac agagcgcaaa
2821 gagagttcgc gcagaatggc attcgttggc gagttgcgga tgctaaggct gctggtgtac
2881 atcctttgtt tgcccttggt gcatctggtg cgcagttttc cccagtccag gcatatactg
2941 gtgattatgg catttcggat gctgcttcta agtttggaca aggtattgac cgtgccgctc
3001 aagccaagat gacgaagcag gaacgtgacc gtttgactgt cagagaagca cttgccgatg
3061 ctgcaatgtt agaggacatt aagcagaaag gtgagcggca cagagcagag ctcggtttga
3121 taagatctga gattgctcgt aatatggctt ccagccggat ggcccttgct aattcggttc
3181 gtgttccggc gatgcctact gttggttatt ctggctctgt aattcctgga cagggagatt
3241 catatgcaac tggacagaca gaacgtgaag tttcgacagt tccaacctca gagaaaggaa
3301 agccttctgt tcaggcagga actcctcctg atgtgcgttt ttatcgcacc tccactggcc
3361 gtactccttt acctactgaa gaggccgcag atgctattga cgctgccttt ggcgctggca
3421 ttcagtggtc tttgcgcaat aacctgttac cttatctcgc taatttcttc cctataaacg
3481 atccacacag gcgtgagggt gagtactacg acttgatttt tggtcagtat cgtaagggaa
3541 aaaggattcg cgactatttt ggttattgac ggcatgatgg ttattatgaa atattaactt
3601 tactacaaat aaggaggttt ctttatggct cgtttccgtc gtcgtggtcg tcgtggtcgt
3661 cgtcgtcgtc gtttgaacgt attccggcgt cgtattggta ctcgtctctg atgttcatga
3721 ggcatgcagg ttgttatgcc gtaatccttt tattcgtgat cctacaggaa agattttgaa
3781 gtttggtagg tatggcgatt tccagaatcg catagaaggt gcgccttttc catgtggtca
3841 gtgccttcct tgtcgtatca accggcggag agtctggact cttcgcctaa tgttggagtc
3901 ctattatcat gagaaagctt gtttctgtac ccttacttat gatgctgacc atatccctct
3961 ttcttctcac ggcttgccag tccttgacaa aagagaggtt cagctctgga tcaagcgatt
4021 gcgaaagcta ttttcagata gaacgatccg cttctatctc tgtggagaat acgggaagca
4081 aagcttcaga ccacattacc acgccatcct cttcggagtc gatgcctcag aactcgatcc
4141 cgaatggtta atctggaaag gccagagtgg cccagctaca aatactcggc tggctcgcct
4201 caatactccc ctttatagga cttggtccaa aggaattgtc catgtaggtg aatttaatcg
4261 aaaaactgtt cagtacgttg ctgggtacgt tttgaagaag cttgtaaagg tagatagacg
4321 cactggtgtg gttctaccta atattttaga agatggtaca gttgaggaac attccgatga
4381 acgtgtccca gaatttggct tgatgtcgag gcgtcctggt ctaggcttta gagctgtcga
4441 agacataaaa aagtctcttt tgcatttttc gtctgtggac gatttcagga gagagcttag
4501 agttgacggt aagctctggc cgctaggacg ctttcttctt gataagcttc agatttgcct
4561 tgaaaaggag tttgattctg cttcctatct ttctacttta acgactaccc ttgttgagtc
4621 tgaaaagact ggccgcgatt ttcttgaact cctggttgaa caggattcag gcaaggctgc
4681 tcttcttgaa tccaaacaga aacttttccc gaggtgtact tt
//
