LOCUS MN379646 6710 bp DNA circular PHG 04-APR-2020
DEFINITION Chicken microvirus mg8_41, complete genome.
ACCESSION MN379646
VERSION MN379646.1
KEYWORDS .
SOURCE Chicken microvirus mg8_41
ORGANISM Chicken microvirus mg8_41
Viruses; Monodnaviria; Sangervirae; Phixviricota;
Malgrandaviricetes; Petitvirales; Microviridae; Microvirus.
REFERENCE 1 (bases 1 to 6710)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 6710)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (26-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..6710
/organism="Chicken microvirus mg8_41"
/mol_type="genomic DNA"
/isolate="mg8_41"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720933"
/country="USA"
/collection_date="2017"
CDS 1..2127
/note="similar to PHA00363"
/codon_start=1
/transl_table=11
/product="major capsid protein"
/protein_id="QIR82377.1"
/translation="MPNILKNPNYRARLGRHGHDLSRRLLFTSSVGQLLPVLNDFLLK
GDKVRLNESVFTRTQPLKTPAFVRCTEHIYYFFVPMKQMNAYWEQAYFGIQDIMNTND
IPLKYDGSGNGAQVPMVSAGGYFRLPLIDNSCISLQDLLRGLFGVFSRSSGTITDVNI
QSKFYVVGETGNAGRFPVYAKNTAVSSSLDQYNIPMLWNAIRLLDLLGYGGRLYSSVG
GNVVKGDGSLGALEDYTKNKLGGIFQVKVNLYSLAAYQKIFYDFFRLSKFTANSPYAY
NFSRYNSSVSTYDGRAILNYDLRYFNVDTTNDSYRYHGLFELHYHPFKKDFFTNIETT
PLFDLSGTGINTYTDGRNTVSNDELTPSLSDLASQVLSTYGVQRQNITETLTGRSNAN
VSSSGIETIAQGESPSVQQLRLAYAYDRLLAITQRGGRHVDDQYAAHFGSRPPQGVSD
EVYYLGSHSSPLKIGEVVATAAGSADSDNTSVLGELAGRGLGVSSKNKDITFTAPCHG
ILMAIYSCVPDIEYRDTGIDRKNFYTSINDYPHPEFDNLGMQPLFNVQSNIHLVGVNT
ANSIFGWQYRYSELKLAYDRICGAFNYTLIDWTSATYFGEDVATGGYLDIGDIFYVSP
NFLNRIMALDFNPPLVSADGINRVLLGYCRKSYGSATDTPNIKFYTLANDFFTDTVYE
RDPLLHSIDFKYYKTSCLSTYGLPNI"
CDS 2131..2538
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82375.1"
/translation="MNTLFVNKFYGIGRNIGKEEIPPANVVNTILCNFENDNPVFSQL
YKIAIESGSLPNDIDLSLSKSTPEEFRAVLSSLQRKFPTAAAFSSDEDAFEFIASRYA
QFGNEVQPYLDAIEAQMKDIQVAQVQPSQPNPE"
CDS 2535..3776
/note="similar to PHA00327"
/codon_start=1
/transl_table=11
/product="DNA pilot protein"
/protein_id="QIR82374.1"
/translation="MIMDWKAIGQTAAQTGIGAITGGVGGALASGLSGLIGNIFGDKT
PSQKDIMAWQEKMLEKQFAFNKQEAALNRDFQKSMMEAAQQWNSIGSQMQRAQAAGVN
PFSLINNSGYQSVGSSAMASGSQAAPASGMMPGQPSSLDAQRFNLIAAAMQSISNSSL
SQSKKNEIDTKLAAELRKTIAEADINEAEAKIKQLVANDPRLSDFVTAFFVKAREEAE
TAAARTDYIKDMSDLVKQDKNLKFLQGKIKKEHWNIVQPLLGDYYQGVIDKNTAETGL
AKARTTTESYVQAELWSRKQLNDITAQVQDTIKQLNDFVIDINKATNDDKKAFVKKHY
QELRNRESELTDLLREQLELAKKNNDTYMVRVITDCLTDLISVGADVYAKTRKNRGYI
EESETSHYGRDTYSTRRITPI"
CDS 4300..4674
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82376.1"
/translation="MRYIKTLLDFSFHFDQTGKYVDNRPLFGRLIIKSNRKCFLYTWQ
PIQGLKKYRKVHYEAFIPFNTWRVFERDNFACFNRFDQNKLIPYCLNSFDFQDVRITY
VIRRPSFPCCFVAYELCNDFFE"
CDS 5266..6708
/note="similar to PHA00330"
/codon_start=1
/transl_table=11
/product="replication initiator protein"
/protein_id="QIR82378.1"
/translation="MCTNIKPVRNPYTGKIIYAKCGECPSCQLDRAKRQLVRLVNTNM
KDRFNLFFSLTYDNAHVPYVKLADLDFGVEVPVYRQCDSKYVQPKGFTSPYLRHKFGE
FQIDAFILTSKADYRRLKLTKSLPNPVDMKLGEVVAVCCNQDFTRFVKRFCVNFYRAT
GKKIQSADLSFGYYRVSEYGPTTFRPHFHVLFTFSSDLRPYYEQIKAAIVKSWPMCNP
DEFSNKDHGIQEAISPNDYISKYTCRPADMPKALQVAHIRPRPSFSTFIGRDNVQFNG
DHFLACIANKAMEYVAPKRLTSGCSVLVNLCLPRYVTRWFIPAIKSAYKFTDGEIERV
CYDPRSCLSLLLSKGYTYDDYKSLVNNIDIRKARICLSDDMFAQMVVEFRRITRSHVM
ASQFNDDQMLYPDLYYDNLFDSHDERRLPLMRQGYKNINETPNRMAIEQPKIDEYNAN
QKQRKIFSIFSSRRAIQNIRHQQWFNYKFE"
ORIGIN
1 atgcctaata ttttaaaaaa tccaaactat cgtgcccgtc ttggacgaca tggacacgat
61 ttaagccgcc gattattgtt tacctcatcg gtcggtcagc ttttgcctgt cctcaatgac
121 tttctcctta aaggagataa agttcgtttg aatgaaagtg tctttactcg tacacaacct
181 ttgaagactc ctgcttttgt tcgttgtact gaacatatct actacttctt cgttccaatg
241 aagcaaatga atgcctattg ggaacaggca tattttggta ttcaggatat aatgaatacg
301 aatgacattc cactgaaata cgacggtagt ggtaatggag cccaagtccc tatggtttct
361 gctggtggct atttccgttt gccgcttatt gataattctt gcatatcatt gcaagactta
421 cttcgtggtc tctttggtgt gtttagtcgt agttctggta ccattaccga tgttaatata
481 caaagtaaat tttatgttgt tggtgaaact ggtaatgctg gccgtttccc tgtttatgct
541 aagaatactg cagtgtcttc ttctctagac cagtataaca taccaatgct ttggaatgcc
601 attcgtcttc ttgacctttt aggttatggc ggccgactgt atagttccgt cggtggtaac
661 gtggttaaag gagatggcag tcttggtgcc ttggaagatt atactaaaaa caagttgggt
721 ggtatctttc aagttaaggt aaatttatat tctcttgccg cttaccagaa gattttctat
781 gatttcttcc gtcttagtaa gtttactgct aatagtccat acgcgtataa tttcagtcga
841 tataattcat ctgtatctac ttatgatggt cgtgctatct tgaattatga tttacgttat
901 tttaatgtag atactactaa tgactcatat cgttaccatg gtctatttga attgcattat
961 cacccgttca aaaaggattt tttcacaaat atagagacaa ctcctttgtt tgatttgtca
1021 ggtaccggta taaatactta tacagacggt cgcaatactg tttctaacga cgagttaacg
1081 ccatctttgt ctgaccttgc ttcacaggtt ttgtctactt atggtgttca gcgtcagaat
1141 ataacagaga ctcttacagg ccgttctaat gctaacgttt catcaagtgg tattgaaact
1201 attgctcaag gtgaatcacc gtccgttcag caacttcgtc ttgcttatgc atatgatcgt
1261 cttttggcta taacgcaacg tggaggtcgt catgtagatg atcagtatgc tgcgcatttt
1321 ggttcacgtc ctccccaggg tgtatcagat gaagtttact atcttggcag tcattcatca
1381 cctttgaaga taggtgaagt tgttgcgact gctgctggtt ctgctgatag tgataataca
1441 tctgttcttg gtgaacttgc tggtcgcggt cttggtgtgt cttcgaagaa taaggatatt
1501 acttttacag caccctgtca tggtatattg atggctatat actcatgcgt gcctgatata
1561 gagtatcgtg atacaggtat tgatcgcaag aacttctata cgtctattaa tgactatcca
1621 caccctgaat ttgacaattt aggaatgcag cctttgttca atgttcagag taatattcat
1681 cttgtaggtg ttaatactgc caatagtata ttcggttggc aatatcgtta cagtgaattg
1741 aaacttgcat atgatcgtat ctgtggtgcc ttcaattata cccttataga ttggacttct
1801 gctacatatt tcggcgaaga tgttgctact ggtggctatc ttgatattgg tgatatattc
1861 tatgtatctc ctaacttttt gaataggata atggccttgg actttaatcc gccattagta
1921 tctgctgatg gtattaatcg tgttttgcta ggttattgtc gtaaatctta tggttcggct
1981 acggatactc ccaatattaa attttacact ttggctaatg atttcttcac ggatacagtc
2041 tacgaacgtg atcctctctt acattcaatt gatttcaagt attacaagac ttcatgtctt
2101 tcaacttatg gtcttccaaa catttaagct atgaatactt tgtttgttaa taaattctac
2161 ggcattggcc gtaacattgg taaggaggaa atacctcctg ccaatgttgt aaatacaatt
2221 ttgtgtaact ttgagaatga caacccagta ttctcccagt tgtataagat agcgattgag
2281 tctggttcac ttcccaatga tatagatttg tctctgtcta agtcaacacc tgaagagttt
2341 cgtgctgtcc tttcttcttt gcaacgtaag ttccccactg ctgctgcttt ttcttctgat
2401 gaagatgcct ttgaattcat tgcatctcgt tatgctcaat ttggtaatga ggttcagcct
2461 tatcttgatg ctattgaagc tcaaatgaaa gatatacaag tagctcaagt tcaaccatct
2521 caacctaacc ctgaatgatt atggattgga aagcaattgg acaaactgct gctcaaacag
2581 gcataggtgc catcactggt ggagttggtg gcgcccttgc ttctggtctt tctggtctta
2641 ttggtaatat ctttggagac aagacaccat cccagaaaga catcatggca tggcaggaaa
2701 agatgctcga gaaacagttt gcatttaata agcaggaagc tgctcttaat cgagattttc
2761 aaaagtctat gatggaggct gctcaacagt ggaattcaat aggctctcag atgcagcgtg
2821 cgcaggccgc tggagttaat ccttttagtc ttataaacaa tagcggttat caatctgtcg
2881 gctcttctgc tatggcttcg ggttcccagg ctgctcctgc ttcaggaatg atgcctggtc
2941 aaccctcgtc tcttgatgct caaaggttca accttatagc cgctgccatg caatctatca
3001 gtaattcttc acttagtcag tctaagaaga atgaaataga cactaagtta gctgctgaat
3061 tgcgtaagac tattgctgaa gctgatataa atgaagctga agccaagata aagcaattgg
3121 ttgctaatga tccccgtctg tctgatttcg tcactgcatt ttttgtcaag gctcgtgaag
3181 aggctgagac tgctgctgct cgaacagact acattaagga tatgtctgac ctcgtcaagc
3241 aggataaaaa tctcaagttc cttcaaggta agattaagaa agagcattgg aacattgtcc
3301 agcctttgct gggcgattat taccaaggtg ttatcgacaa gaataccgct gaaacaggtc
3361 tggcgaaagc acgtacaaca actgaaagct atgttcaggc tgaactctgg tcgcgcaagc
3421 agcttaatga tatcactgcc caagttcaag ataccatcaa gcagcttaat gactttgtta
3481 ttgatatcaa caaggctact aacgatgata agaaggcatt cgttaagaaa cattatcaag
3541 agcttcgtaa ccgagagtct gagcttactg atttgttgcg agaacagctt gagttggcca
3601 agaagaacaa cgacacttat atggttcgtg ttatcactga ctgtctaaca gatctcatat
3661 ctgttggtgc tgatgtatac gctaagacac gtaagaaccg cgggtacatc gaagagagtg
3721 agacatcaca ttacggccgt gatacatata gtactcgtcg tattactcct atttagtgtt
3781 aaatttattt aatttatttg attgtattaa attaattgct atctttgcat tgttaaacaa
3841 aaaaaatatt gttatggtta cagttataag aaaagttgag gcttatacgc ctcttgaaca
3901 atcaattaca gtttatcttg ttaatttatc gcttaatcct cagacaccgc cccgagaggt
3961 ggctttctcc accctctctg aagccactca gttcattcag gatattaacg gttttcctga
4021 caagtacttg aaaggtttgt ttgattaaag ggttgttcct ttctccagcc tctctgaagc
4081 cactcagttc attcaggata ttaacggttt tcctgacaag tacttgaaag gactgtttga
4141 ctaagtggtt gtttcgaccc ccgaaggggg tcgaaatttt tttttgactt tgtgttaaca
4201 tttattaata catttgctaa cacttttaac actcatttaa cgcataatgt cttaaaaaag
4261 tgttatcttt gcatagttaa acaattaaac attatagcta tgcgttacat caagacatta
4321 ttagatttta gttttcattt tgaccagact ggtaagtatg ttgataaccg tcctcttttt
4381 ggccgtttaa tcatcaagag taataggaaa tgtttcttat atacttggca gcctatacaa
4441 ggtcttaaaa agtacagaaa ggttcactat gaggctttta ttccttttaa tacttggaga
4501 gtctttgagc gtgacaattt tgcttgtttt aatcgttttg accagaacaa gcttatccct
4561 tactgtttaa atagttttga ttttcaagac gttcgtataa catacgtcat tcgtcgaccc
4621 tcttttcctt gttgtttcgt tgcttatgaa ctttgcaatg atttttttga gtaacaccca
4681 gcgaagcggc cgaagcgaag cgattcctcg gccgctgcta atttatgcct gagcttgctc
4741 agagcgaggt gacgagcgtg catatgcgac tagcataaac gtcccaaccg ctcgcagact
4801 agcgtaagcg tatgtctgca aaggcaagtg aaacgccgcc gcccgtatta gactaaatga
4861 taacacccac ggatgtgaag tggcgattta accttaccat cgccaaactt gctcttgacc
4921 ctcatatttt gtcgtacaca gcttaaaatt gtacgacact ttccaacaaa tcaccaaata
4981 gcttgtcttt tgcgtgattt caatcgattt tatatcgaaa aatttttttt atcaatttat
5041 tttattatat ttgcccaaaa ttaattatat gagtaaagaa attattaaaa tcattttgaa
5101 agtcatagcc tatgccatta ctttaatttt aggctatctt ggcgtaaacg ctatggtttc
5161 atgtactgtc catcatgctt tagatgctaa aggacgtaca attatagtta caagtgatac
5221 gactgtcata aatcatgacg gttatatgaa atatcctaga tagatatgtg tacaaacatt
5281 aaacctgtcc gtaatccata cactggcaag attatatacg ctaagtgtgg tgaatgtccc
5341 tcatgtcaac ttgacagggc aaagcgtcag cttgttcgcc ttgttaacac taacatgaaa
5401 gacaggttta atttgttctt ctctctcaca tacgacaatg ctcatgtgcc ttatgtcaag
5461 cttgccgacc ttgattttgg tgttgaagtt cctgtttatc gtcaatgtga tagcaagtat
5521 gtacaaccta aaggttttac ttctccctat cttcgtcata aatttggcga atttcaaatt
5581 gacgctttta ttttgacttc aaaagctgat tatcgtcgtt tgaagcttac taagtccttg
5641 cctaaccctg ttgacatgaa actaggagaa gttgttgccg tatgttgtaa tcaagatttt
5701 actaggtttg ttaaacgttt ttgtgttaat ttttatcgtg ctacaggaaa aaagatacag
5761 tctgctgatc tttcattcgg atattatcga gttagcgagt atggaccgac cactttccgc
5821 ccgcattttc acgtactctt tacgttctcc tcggacctta gaccatatta cgagcaaatc
5881 aaagctgcca ttgttaagag ttggccgatg tgtaatcctg atgaattttc caacaaagac
5941 catggaattc aagaagcgat tagtccgaat gattacattt cgaagtacac ttgccgccct
6001 gctgatatgc ccaaagcttt gcaagttgca catattagac cgcgcccctc gtttagtaca
6061 tttattggcc gtgataatgt gcagtttaat ggcgatcatt tccttgcctg tatcgccaac
6121 aaggctatgg aatatgttgc tccgaaacgt ctcacatctg gatgcagtgt cctcgttaat
6181 ttatgtcttc cccgctacgt tacacgttgg ttcattccag caattaagtc ggcttataag
6241 ttcactgatg gggagattga gagagtatgc tacgatcctc gaagttgttt gtcattactc
6301 ttgtccaaag gatatactta cgacgactat aagtcattag ttaataatat agacattcgt
6361 aaggctcgta tatgtttgtc tgatgatatg tttgcgcaga tggttgttga atttcgtcgt
6421 ataacacgtt cacatgttat ggcttcgcag ttcaatgatg atcagatgct gtatcctgat
6481 ctttattatg ataatctatt cgacagtcat gatgaacgtc gtttaccttt gatgcgacaa
6541 ggctataaga atattaatga aactccgaat agaatggcca ttgagcagcc taagattgat
6601 gaatacaatg ctaatcagaa gcagcgtaaa attttttcta ttttctcgtc tcgccgtgct
6661 atccaaaata taagacatca acaatggttt aactataaat ttgaataatt
//
