LOCUS MN379647 6390 bp DNA circular PHG 04-APR-2020
DEFINITION Chicken microvirus mg8_45, complete genome.
ACCESSION MN379647
VERSION MN379647.1
KEYWORDS .
SOURCE Chicken microvirus mg8_45
ORGANISM Chicken microvirus mg8_45
Viruses; Monodnaviria; Sangervirae; Phixviricota;
Malgrandaviricetes; Petitvirales; Microviridae; Microvirus.
REFERENCE 1 (bases 1 to 6390)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 6390)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (26-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..6390
/organism="Chicken microvirus mg8_45"
/mol_type="genomic DNA"
/isolate="mg8_45"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720934"
/country="USA"
/collection_date="2017"
CDS 1..2316
/note="similar to PHA00363"
/codon_start=1
/transl_table=11
/product="major capsid protein"
/protein_id="QIR82384.1"
/translation="MANVFDKIGDIKNNIRRNNFDWSHDNNFTTGLGRIIPLFCTQVP
AGSSLRIKPTFGLQFMPMMFPVQTKVKAYLSAYRMPLRALWKDYKDWVSSANDQSSSL
EPPYMAFSPDFGKGEILGVSGLSDYLGLPVTASLDSATVSDGNFGNIIEPASSLYRTM
AQAPVFLANSPVVAAIDNEPYQNYSLAASKATINDDFFRTCRLSTAKVSMPTGAEQAV
MRVTLTFSASQKYGILILRDIESSRKSQDGDNTFGGIYARKPTNSVSIASKVGFRAIF
DTDNITWYQDSAGNYYFTFVAEGVVLNDSTTSDDTGMDFFLFMPNVRSIFTGVNESTA
GMVVENMILETSSGSTLSLDSSTTPYYMRGSQNVNSLKISAYPYRTYEAIYNAYIRNN
KNNPFLIDGKPVYNTWIPTDKGGADQTDYQLHHANWASDMFTTAVPSPQQGSAPLVGI
TTYESTRTLENGHTETVLNTALVDEDGNKFKVNFESNGEELKNVSYTQLSADTPVKPL
SSLYDLVTSGISINDFRNVNAYQRYLELNMFRGYSYKDIVEGRFDVNIRYDDLNMPEY
LGGCTRDVIINPITQTVQVNSSGKYEDALGSQSGLGLLRGDCENISCYCDEESIVMVL
LSVVPMPVYTQALPKHFLYRERLDSFNPEFDNIGFQPIRMSEIAPVQQWVSDPSKMND
VFGYQRPWYEYCQQLDTAHGLFKTQLRNFLINRVFGSVPELGAAFTTVDENEVNDVFA
VTDVSDKILGQVHFDITAKLPISRVVVPKLE"
CDS 2318..2623
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82380.1"
/translation="MELVCRRPFKLSKLQRPKRALHEEPVQSGLAITPSDIERLAQQG
VAVSVPNADNFIYNNESGWEIDPVYARDADRNSMWEASQQAKHRIMRAKKRDEQRYT"
CDS 2677..3798
/note="similar to PHA00327"
/codon_start=1
/transl_table=11
/product="DNA pilot protein"
/protein_id="QIR82379.1"
/translation="MSILAGIYGGVKAAGGLLSGLFSGIGANKRLEKAQEFEREQNEI
SRNWQEKMYQQQVQNQRQDVAQLQAYNSPLAQMKRLQAAGLNPDLMYAGGASGLVGSS
MPSYSAPSGSGATANAVSAFGSLPTVGEGMIQGIAAMKTLAETENIKQDTMKKQGEVT
SLDLDNFIKAATQGETIELTGLQVTLAKKAAALSDQQRTNMIQELKNLQSQNEYCNAQ
IQTAMAQARNLDSSTLVNRISAFLAGPRFENECRQLQQSLKESDARINLSNAQAKEIL
CLVMAKKLNLEEDTLLKRAGVRKTNFEAANAIRQGNLLNIQGKQMQFNYEQSTSYDDA
ERVTNMVGSVLGSVGQIAADILLFKGINSGRQVVRGFGR"
CDS 4029..4286
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82381.1"
/translation="MKAYHYEIDYVYIVDGETKETRTYKSVFFFLHQNCMDECVIALE
RYRRHYGIVGSRIVETEVPMSVLSDNDLVAKYYTDMSIKNV"
CDS 4289..4534
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82382.1"
/translation="MTTLYQYVIRYFNVRRKKSYITITSPYFAFNDICSESMHETIRV
VLSNANYKIDSYYVTTVLVDTIDGVNVLTQPETALPF"
CDS 4645..6168
/note="similar to PHA00330"
/codon_start=1
/transl_table=11
/product="replication initiator protein"
/protein_id="QIR82383.1"
/translation="MNKKTNIYCEHPVILLNPRFRWLCRKYGAICIRNIRVWVRLNGV
YPDSRFFLPKRNKIGLEEVNSCYFLNEKTGDTAPLYMVVPCGHCTLCRAKKSRELMFR
CVAETNRWGTVPYFITFTYNNENLPKDGVQKRDLQLFFKRLRSRLDYYGIEHNLRYFA
VAEYGSKTKRAHYHVILWNFPEKTFPSLMAIQHFIEKSWSKFVYVQDKDGKNHRVSLR
DDKGRVLRYPSGAIKYQTEQLGFIRVLPMKQGCPAYVTKYMRKSCVVPPAHNPVFSLA
SNRGGGIGSQFFKDNAELIRNNPAMQRLEIVDKVISGRTFTCPITQYVKNIVMPSASS
KIDKSDYDIVKKFYVNLDLFQHLEIRFRQFDMLNLDIWDYKSECIKHWYDPFTHWTSR
KEWREAVKLTSPYMFPIIKEYRIDILSLKKVLDTESHRRYLWDLMATTIDNLNNYSQR
ILQMSDLRSYFADRDKYSKVRSDFFSELYRNADGFDVKLAAERIINNEIKQSHKDVF"
ORIGIN
1 atggctaatg tttttgacaa aatcggcgat ataaaaaaca atattcgccg taacaacttc
61 gattggtcgc acgacaacaa tttcacgacc ggattaggtc gtattattcc gttgttctgt
121 acccaagttc ctgcgggttc ttcattgcgt atcaaaccga ctttcggatt gcaattcatg
181 ccaatgatgt tccctgtaca gactaaagta aaggcttacc tttctgctta tcgtatgcct
241 ctgcgtgcct tgtggaaaga ttataaagat tgggtgtcgt ctgctaatga ccaaagttct
301 tcccttgagc cgccttatat ggctttttct cctgatttcg gcaaaggtga aattcttggt
361 gtttcaggtc tttctgacta tcttggattg cctgttactg cttctttgga ttctgctacg
421 gtttccgatg gtaacttcgg caacattatt gaacctgctt catctttgta taggactatg
481 gctcaagctc ctgttttttt ggctaattct cctgttgtgg ctgctatcga taatgagccg
541 taccagaatt attctttagc cgcttcaaaa gctacaatca atgatgattt cttccgcacg
601 tgtagattgt ctactgctaa agtgagtatg cctactggag ctgagcaagc tgtaatgcgt
661 gtaactctta ctttctccgc cagtcaaaag tacggtatat tgattcttcg tgatattgag
721 tcttctcgta aatctcagga tggcgataac acttttggtg gtatctatgc tcgtaaacct
781 actaattctg tctctattgc ttcaaaagtt ggtttccgtg ctatattcga tacggataat
841 attacttggt atcaggattc tgctggtaat tattacttta cctttgttgc tgaaggtgtt
901 gtattaaatg attctacgac ttccgatgat actggaatgg attttttcct gttcatgccg
961 aatgttcgtt caatctttac tggtgttaat gaatctactg caggtatggt agttgaaaac
1021 atgatattag agacttccag tggttccacg ttgtctttgg atagttcaac tactccgtat
1081 tacatgcgtg gttctcagaa tgtaaactct ttgaagatat cggcttatcc ttatcgcacc
1141 tatgaggcta tatataacgc ctatatccgt aacaataaga ataacccgtt tttgattgat
1201 ggcaaacctg tgtataacac ttggattcct actgataaag gaggagcaga ccaaaccgac
1261 tatcagttac accacgctaa ttgggcttct gatatgttca ctactgctgt tccgtctcct
1321 cagcaaggtt ctgcaccgtt ggttggtatc actacttacg aatcaactcg cactttggag
1381 aatggacata ctgaaacggt tcttaatact gctttggtcg atgaggacgg taataagttc
1441 aaggttaatt ttgaatcgaa tggagaagaa ttaaagaatg tttcttatac tcagttgtct
1501 gctgatacgc ctgttaaacc attgtcgtct ctgtatgact tggttacttc gggtatcagt
1561 atcaatgact tccgtaatgt aaatgcttat cagcgttatc tggagttgaa catgttccgt
1621 ggttattcat ataaggatat tgtcgaaggt cgatttgatg tcaatatccg ttacgatgat
1681 ttgaacatgc ctgagtatct cggaggctgc actcgtgacg tgattattaa tcctattact
1741 cagaccgtcc aagttaattc ctcaggtaag tatgaagacg ccttaggttc tcaatcaggc
1801 ttaggtttac tccgtggtga ttgtgaaaac atatcatgtt attgcgatga ggaatctatt
1861 gttatggttt tgttgtcggt tgttcctatg cctgtataca cgcaagcatt accgaaacac
1921 ttcttgtatc gcgaacgtct ggatagcttc aatcctgagt tcgataatat aggattccag
1981 cctatacgca tgagtgagat tgctcctgtt caacagtggg tatctgaccc tagtaagatg
2041 aatgacgttt ttggttatca gcgtccttgg tatgaatatt gccagcagtt ggacacggct
2101 cacggtctgt ttaaaactca gcttcgtaat ttcctcatca accgtgtatt cggttctgtt
2161 cctgaattag gtgcggcgtt tactaccgtt gacgagaatg aagtaaatga tgtgttcgcg
2221 gttactgatg tttctgataa gattctcggt caggtacatt ttgacataac cgctaaatta
2281 cctatttcac gcgttgttgt acctaaatta gagtgatatg gagttagtat gtcgtcgacc
2341 ttttaagttg tctaaattgc agcgtccgaa acgggcgttg catgaagaac ctgttcaatc
2401 aggattagct attacgcctt cggatataga gcggttagct caacaaggtg ttgcggtaag
2461 tgtccctaat gccgataatt tcatctacaa taatgaatca ggctgggaaa ttgaccctgt
2521 ttacgctcgt gacgctgacc gtaattctat gtgggaagct tctcaacagg ctaaacatag
2581 gattatgaga gctaaaaagc gagatgagca acgttatact taatgtttaa tcgccctatc
2641 tacctaatga gtaggtaggg tacaattttt attattatgt ctatattggc tggtatatac
2701 ggaggagtta aagctgcagg aggcttgctc tcaggtttgt tttctggtat tggagcaaat
2761 aaacgtttgg aaaaagcaca ggaatttgaa cgtgaacaga acgaaattag tcgtaattgg
2821 caagagaaga tgtaccaaca acaggtgcaa aatcagcggc aagacgtggc acaattacag
2881 gcttataata gtccgttagc gcaaatgaaa cgtctgcaag ctgctggact taatcccgat
2941 ttgatgtatg ccggtggtgc ttccggctta gttggttctt ctatgccttc atactctgct
3001 ccctctggtt ctggagctac ggcgaatgct gtctctgctt tcggttctct ccctactgtt
3061 ggcgaaggaa tgatacaagg tattgcagct atgaaaactt tggcagagac agaaaatatt
3121 aagcaggaca ctatgaagaa gcaaggcgaa gttacttctt tggacttgga taatttcatc
3181 aaggctgcta ctcagggcga aactattgag ctcaccggtc tgcaggtcac tttggcgaag
3241 aaggctgctg ctctttccga ccaacagcga actaacatga ttcaggagtt gaaaaacctg
3301 caatcacaaa atgagtattg taatgctcag attcaaacgg ctatggctca agctcgcaat
3361 ctggattctt ccacgttggt aaatcgtatt agtgcttttt tggctggtcc tcgttttgaa
3421 aatgaatgtc gtcaacttca gcaatcgttg aaggaatctg atgcccgtat caatctttct
3481 aatgcacagg caaaggagat tctttgtttg gtcatggcga agaaacttaa tttggaagaa
3541 gatacgctat taaagcgtgc tggtgttcgt aagactaatt tcgaagctgc aaatgctata
3601 cgacaaggaa atttgttaaa tatccaaggt aaacaaatgc aattcaatta tgagcaatct
3661 acttcttatg atgatgccga aagagttact aatatggttg gtagcgttct cggttctgtt
3721 gggcaaattg ctgctgatat tttacttttt aagggtatta attcaggacg acaagttgtc
3781 agaggattcg gaagatgata ggggacgggg ggcgtaagtc ccccggctta tcccttactt
3841 gataatatta gcgcaactga caggtaccga agtttatctg aggattgcgc aaagattcct
3901 ttgagttgta cgtacaacat accgcttttg tacattattt aggcggtttt gtacagtggt
3961 cttaaaaact cttgacattc tcttaagaaa tttcttatct ttgtggcaaa ctttaaaacg
4021 ttaggtatat gaaagcttat cattatgaga ttgattatgt ttacattgta gatggtgaaa
4081 cgaaagagac acgaacgtat aagtctgtat tcttttttct tcatcaaaat tgcatggacg
4141 aatgtgtaat tgctcttgag cgttatcgcc gtcactacgg tattgttggt tctcgtatcg
4201 ttgaaacgga ggtccctatg tctgttctct ctgacaatga tttggttgct aagtattata
4261 ctgatatgtc aattaaaaat gtttgattat gacaactctt tatcaatatg ttattcgcta
4321 tttcaatgtt cggagaaaaa agagttatat tactatcacc tctccttact ttgcttttaa
4381 tgatatatgt tccgaaagta tgcacgaaac tatacgtgtc gttttgagca atgctaatta
4441 taagattgat tcttattatg tcactaccgt tctcgttgac actatcgatg gcgtgaatgt
4501 gcttactcaa cctgaaacag ctctcccctt ttaaattatg aaaaaccacg ttcccccctt
4561 gaggggggcg gaggggggta gagattttca ctctgtttgt gagccgcggt gcgtgcgaac
4621 acccgaaatt aatataacag ccgtatgaat aaaaaaacta acatatattg tgaacatccc
4681 gttattttgc tcaacccgcg tttccgttgg ttgtgtcgta aatatggtgc tatatgcatt
4741 cgcaacattc gtgtatgggt gcgccttaat ggtgtatatc ctgatagtcg ctttttcctc
4801 cccaagcgta ataaaatcgg attggaagaa gttaactcgt gctatttcct taatgaaaaa
4861 actggagaca ccgcaccgct ctatatggta gttccttgtg gacattgcac cctttgccgt
4921 gctaaaaaat ctcgtgaatt aatgttccgt tgtgttgctg aaacaaaccg atggggcact
4981 gttccttatt tcattacatt tacttataac aatgaaaatc ttccgaaaga tggtgtacaa
5041 aaaagagatt tacagttatt tttcaaacgc cttaggtcgc gtttggatta ctacggtatt
5101 gagcataatc tacgttattt cgccgttgcc gaatatggaa gtaagacgaa gcgcgcccac
5161 tatcacgtta tactctggaa ctttcccgaa aaaacatttc cttctcttat ggctattcaa
5221 cattttattg agaagtcatg gtcaaaattt gtgtacgttc aagacaagga cggaaaaaat
5281 caccgtgtat cgttacgaga tgataaagga cgtgttcttc gttatccgtc gggagctatt
5341 aaatatcaga ctgagcagtt aggctttatt cgcgtcctcc ctatgaaaca aggatgtccc
5401 gcgtatgtta ctaaatatat gcgtaaatct tgtgttgtgc ctcctgctca taatcctgta
5461 ttctctttgg cttccaaccg tggcggtggt ataggttctc agttctttaa agataatgca
5521 gagcttattc gcaataatcc cgctatgcag cgtttggaaa ttgttgacaa ggttatatca
5581 ggtcgtacct tcacatgtcc tattacgcaa tatgtgaaaa atatcgtcat gccgtctgca
5641 tcctcaaaaa ttgataaaag cgactatgac atagttaaaa aattctatgt caatttggac
5701 ctgttccaac atcttgaaat tcgtttccgt caattcgata tgctcaatct tgatatatgg
5761 gattataaat ctgagtgtat aaaacattgg tatgaccctt ttacacattg gacttctcgc
5821 aaggaatggc gtgaggctgt gaaacttacg tcaccttata tgtttcctat tatcaaagaa
5881 tatagaattg atatactatc cctcaaaaaa gttcttgata ccgaatcgca taggaggtat
5941 ctatgggatt taatggctac gactattgac aatttaaaca attattcaca gaggatattg
6001 caaatgtcag atttaaggtc ttactttgca gatagagaca agtactcgaa agttcggtct
6061 gatttctttt ctgagcttta tcgcaatgct gacggatttg atgtgaaatt agctgctgaa
6121 cgtattatta ataacgaaat aaaacaaagt cataaagatg tattctgatt tattaaaagc
6181 tattgtttct cttttcaaga gtggcaacag gattaaggct atcattgctt tcatccttct
6241 tgcggtccta ttcggtcttt tgacattcag ctgtaccaac tcgctgtatg ttcttaaggg
6301 tacgaatcac actattacta cggaaacaac tctttccgct gattctgcaa atgtttcaac
6361 tgatgttaaa ttacaaaaac ctattgagta
//
