LOCUS MN379648 6328 bp DNA circular PHG 04-APR-2020
DEFINITION Chicken microvirus mg8_48, complete genome.
ACCESSION MN379648
VERSION MN379648.1
KEYWORDS .
SOURCE Chicken microvirus mg8_48
ORGANISM Chicken microvirus mg8_48
Viruses; Monodnaviria; Sangervirae; Phixviricota;
Malgrandaviricetes; Petitvirales; Microviridae; Microvirus.
REFERENCE 1 (bases 1 to 6328)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 6328)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (26-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..6328
/organism="Chicken microvirus mg8_48"
/mol_type="genomic DNA"
/isolate="mg8_48"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720935"
/country="USA"
/collection_date="2017"
CDS 1..1845
/note="similar to PHA00363"
/codon_start=1
/transl_table=11
/product="major capsid protein"
/protein_id="QIR82387.1"
/translation="MANIMSMKSVKNRPTRSGYDLSRRTCFTAKVGELLPVWWNYVLP
FDSYEIDLSSFARTLPVNTASFGRVVEYYDFFFVPLDQLWNRASTTMTQMLNNVQHAS
SLQELVTLDGSHPYLTSIKAFNDVMDVLDGQSGTTPKNMFGFKRSNLATKLMSYLGYG
QPNFEHYYQGSSGKPATFGNRLFYEPNTQASLPNVCVYPLLAYQKIYADFFRYTQWER
ANPSTFNVDWMTGAGDTELKSSQFTDFTGYTMFDLRYCNYQKDLFHGVLPNAQYGDTS
QLSIEGNTANNTYSYNLKQSINAVGPEGTAVTDYLNASNNQLILTVSRNSPTKLPYID
LKSLNVHQIGQFSILALRQAEALQKWKEISQAAEEDYKQQIQAHWGQPVSDFLSGMCT
YLGGHSSTLSINEVVNTNLVQGGTDQPAELAGKGINSVNGKISFNSNGQYGVIMCIYH
ALPLLDYITSGTDMKLLHVESSSFPIPEMDSIGMELLPKAAFLNNGYVSSVTPPNSSL
GYVPRYIDWKTDYDRCVGDFANTYQSWILPYSDTNSQSYVSGPREDTNPNVTGFNASF
AFFKVNPSIVDPMFAASMTDEFDTDPLRCQVFVKAYCSRLLDPNGLPY"
CDS 1857..2330
/note="similar to PHA00099"
/codon_start=1
/transl_table=11
/product="internal scaffolding protein"
/protein_id="QIR82386.1"
/translation="MATIRKPNKQLTPTKVRSVDIKTAVYRSVLPYEDLYIRDNGNGS
VTILSDVDLLFNQQRLDKMNRTALLDQLQGNQFKQDPVLSELRSKVPDEYILKFVKSR
YIQSPSELRNWAAYLERTYSTELADAQAAAAAADAVSAAAAAAADDGSSSAKSVE"
CDS 2439..3407
/note="similar to PHA00327"
/codon_start=1
/transl_table=11
/product="DNA pilot protein"
/protein_id="QIR82385.1"
/translation="MGKSDVDKTNAANLQIARETNQSNYNIAQMSNEYNSAQLDKQIA
EQWRMWQAENAYNTPAAQAERMREAGLNPVLGDIGTGSASSMSSPSPQPAVTPTMVGA
TMQPDNTFERVIGSLGAIQNSLNSYVDNVYKQTQIVGATQNNEYARQSQQYMLDMLKN
SKVISDITAGNEKRRQYLELGMSTEAYNAAIEQSAQMAIKTIRDNTELNFLEPNLQVD
LGRKFSQWALDKKMGILTDKQIQKECQEIYRMGRENRIGDALESAAIQQGKDQGVIIS
NQAAASQYAPEKAYSTSGPDNMWQGIYRAYTEFEQLINAVGGYFGK"
CDS 4730..6304
/note="similar to PHA00330"
/codon_start=1
/transl_table=11
/product="replication initiator protein"
/protein_id="QIR82388.1"
/translation="MKKSWYPLYKCLYPRSIINPYTHERILVGCDKCAACMQRRSARS
QLQIRLEARDSYKVIFGTLTFANSYVPRAVLIPNGNIHLDGCEYNLVVKDTGEILGTE
RLNPKDVEDLKEKLYLFGDIPYLYKRDAQLFIKRLRKYLSKHYGEEKIRYYICGEYAP
EHFRPHFHFLVFLQSGQFLENSGKVLSDYPQWTWEHTTDCSPDTPVSKIEDAIRQSWS
FGSVQTDIAKGDTASYVSGYVAGSVPLPKIFKMRSVRPFSLHSQFLGVRFLKSQRTQI
YQTSPREFVRRSFVDNGVASEYVLWRSAYAVFYPKCKGYSDKSSRVRLTAYRIYAAAM
EEYGTEIPLIEVSSQIAEWIYESQMYDGVFPRFGLSPSLAVLIRFFLSSLPRHNRVSD
SYNKRRILDSWICSIYSQLLLSKHFLNFVCNGDYTIKVSKYYLQKIEEFYDYIEQMRL
ADFYKAQQDYYGTDFVTDETLPDIEFFYDNGDFDFEKLQQSEIYQRYVTHVNRIQHDC
MKHRIQNERNMKFADK"
ORIGIN
1 atggcaaata ttatgtctat gaagtctgtc aagaacagac caacccgttc cggttatgac
61 cttagccgcc gaacttgctt cacggcaaaa gtaggtgaac ttctccccgt atggtggaac
121 tatgttttac cgtttgatag ttatgagatt gatttgtctt ctttcgctcg tactctgccg
181 gtcaatacgg cttcatttgg tcgtgtcgtt gagtattatg acttcttctt tgtacctctt
241 gaccaacttt ggaatcgtgc ctctactacc atgacacaga tgttgaataa tgttcagcat
301 gcaagtagct tgcaagaact cgttacgctc gatggctcgc atccttattt gacttctatt
361 aaggcgttta atgatgtaat ggatgtgttg gacggacaaa gcggtactac accgaaaaat
421 atgtttggat tcaagcgttc taatcttgct acaaaattga tgtcgtatct aggttatggt
481 caaccgaact ttgaacatta ttatcaaggt tcctccggta aacctgctac gtttggtaat
541 cgtttatttt atgagcctaa tacacaggcg tctcttccga atgtatgtgt ttatcctctt
601 ctcgcatatc agaaaattta cgccgacttc ttccgttata ctcagtggga acgtgcaaat
661 ccctctacat ttaatgtaga ttggatgact ggtgccggtg atactgaatt gaagtcttca
721 caatttactg acttcactgg ctatactatg tttgatttga gatattgtaa ctatcagaaa
781 gacctctttc acggtgttct cccgaatgct caatacggtg atacttctca attgagtatt
841 gaaggtaata ctgccaataa tacttattct tataacttaa agcaatctat taatgcggtt
901 ggtcccgagg gtactgctgt gactgattac ttgaacgcta gcaataatca gttgattctt
961 acggtttccc gcaattctcc aactaaattg ccttatattg atttaaagag ccttaatgtt
1021 catcagatag gtcagttttc tatccttgcc ttacgtcaag ctgaagcttt gcaaaagtgg
1081 aaagagatta gtcaagctgc tgaagaagac tataagcagc aaatccaagc ccattggggt
1141 cagcctgttt ctgacttcct gtccggtatg tgtacgtatc ttggcggaca ttcctctacg
1201 ctttctatta acgaagttgt gaatactaat cttgttcaag gtggtactga ccaacctgcc
1261 gaacttgccg gaaaaggtat taattctgta aatggcaaga tatcatttaa tagtaatggt
1321 cagtatggcg ttatcatgtg tatttatcat gctcttccgc ttcttgatta tattaccagt
1381 ggtactgata tgaagctgct tcacgttgag tcgtcttcgt tccccattcc cgaaatggat
1441 tctatcggta tggaactgct cccgaaagct gcgtttctta ataacggtta tgtgtcttcc
1501 gttactccgc ctaattcttc attaggttat gttcctcggt acattgattg gaagacggac
1561 tatgatagat gcgttggtga ttttgcgaac acttatcagt catggatact tccgtatagt
1621 gatacgaatt cacagagtta tgtatcgggt ccccgtgagg ataccaaccc gaatgttacc
1681 ggctttaatg cttcttttgc tttcttcaaa gtaaatccta gtattgtaga cccgatgttc
1741 gctgcctcta tgactgatga gtttgacaca gacccgttgc gttgtcaagt gtttgtaaaa
1801 gcatattgct cgagattgtt agacccgaat ggattacctt attaaaacta gtaattatgg
1861 ctactataag aaaaccgaat aaacagctta ctccgacaaa agttcggtcg gttgatatta
1921 agactgctgt ctatcgttct gttcttcctt atgaagactt gtatattcgt gataatggaa
1981 acggttctgt taccattttg tctgatgttg acttgttgtt taatcagcaa cggcttgata
2041 aaatgaatcg tacagccttg cttgaccaat tgcaaggtaa tcagtttaaa caagacccgg
2101 ttttgtctga acttcgttca aaggtgccgg atgagtatat tctgaaattt gtcaagtccc
2161 gttatattca gtcgcctagt gagttgcgta attgggctgc atatcttgag cgtacttatt
2221 ctactgaatt agctgatgcc caagccgctg ccgctgctgc tgatgctgtt tccgctgctg
2281 ctgctgctgc tgctgatgac ggctcttctt ctgctaaatc tgtggaataa ttatgtaaca
2341 tgttaaatgt aacatgttaa atgtaacata gtttagttaa atgtaacata agtcagtctc
2401 aaccaattat ttgagactga tttattaaat tgtttagtat gggaaaatct gatgttgaca
2461 aaacgaacgc cgctaactta cagatagcac gtgaaacgaa tcaaagtaat tataatattg
2521 cgcaaatgtc gaatgagtac aattctgcgc aattagataa acagattgcg gaacaatggc
2581 gtatgtggca agctgagaat gcgtataata cgccggctgc ccaagctgaa cgcatgcgtg
2641 aggctggatt gaatcccgtc ctcggtgata ttggtaccgg ttctgcttct tctatgtctt
2701 caccttcacc tcaacctgct gtcactccta ctatggtagg tgctacaatg cagccggata
2761 atacgtttga gcgtgtaatc ggttcgctcg gtgctattca aaattcgttg aactcgtacg
2821 ttgataatgt gtataaacag acacaaattg tcggtgctac gcaaaacaat gaatacgcac
2881 gtcaatctca gcagtatatg cttgacatgt tgaaaaattc aaaggttatc agcgacatta
2941 ctgccggtaa tgagaaaaga agacaatatt tggaacttgg catgagtact gaagcctaca
3001 atgcggctat tgaacaatct gcccaaatgg ctatcaagac aattcgagat aataccgaat
3061 tgaacttcct tgagccgaac ttgcaagttg acctaggtag aaaattcagc caatgggcac
3121 tcgataagaa aatgggtatt cttactgata aacagattca gaaagaatgc caagaaattt
3181 atcgaatggg acgtgaaaac cggattggtg acgctttgga atctgctgct atccaacaag
3241 gtaaagacca aggtgttatt atttctaatc aagctgctgc gtctcaatat gcgccggaaa
3301 aagcctattc tacttcgggt cccgataata tgtggcaagg tatttaccga gcttatacag
3361 aatttgagca attaatcaat gccgtcggcg gttactttgg aaaatgacgt actacgttga
3421 tggattggat attccgttcg attcctttga ggatattgaa cgcttcttgt tgtctttgaa
3481 acagcctagc ttgctatatc ttctagctct tgacagatac gtttattatg gtgacttgga
3541 tagtaatatg tttatgtgtt gcggttatct tcggattgga catacggaca actctaagaa
3601 aaggcattat tatatacaca tgtttcgtgt tagcgattct gacgtttatc gctctcgttg
3661 cattgtgccg tttgctcgtt gtttcatgaa cgtgtctaac cggacaacca agagcccttt
3721 aaaataaata aaacaaataa aaattccgct cttttttccg atagtatcct gtctcctata
3781 agaagtaagt gccttgccgg cttaacctgt cgccctgtgc gtgcaaagtt attttgaggt
3841 aaacagatta taattaaaaa ctgttaaaat ttaatcgctt gcgattctat tttaatagtt
3901 tttgattatt ctgtttgcat caaaataaaa aactttgcac tgggcgacag attaagccgg
3961 caaggtgctt atttcgttag gtgacggtac gttcggaaaa ggctcctgct ggtggattca
4021 tgaatacttt attttaataa ctattgttgt ccggttattt gtgatatcta tatttcccat
4081 gcgcacccta ctagggtgga gcgcaaggaa accgatgcct agtattattt tgacggagtc
4141 gtttctcact tttcgcgaag tgtaatcggt taatgtcttc cgattaccta tatttctcga
4201 cctatatagg aaaagtgaca ccactctgta atgtaaaagt atcttaatta tatttcatgt
4261 ctattggaat ttgtgattgt aatatttata tttgctcccg ttaatcaaat catttgttct
4321 aattatgcaa aagaagtata aagtaatttc tgattttggt tcagacgttg tatttgtcga
4381 attgtttgaa accttggaag ctgctacaca gactttcagt aagtctatca aagatgacgc
4441 gtactatgtg tatttgttgg aaatcctcat gagttactct tcgggtgatt cttgtgaaaa
4501 ggttttatca ttctttaaac attaatatta tggattctaa atttatgact cgtgaaaaat
4561 ggattgaaat tgctcgtatc gttgctaatg ctattgtggc gattattgcg gcgttgaccg
4621 ttactaattg tactgctact atgtctatta gtaagtataa cactagttcc ccgcaacgaa
4681 ttgaacagac tacaaatgtc gattctacaa gatttaatgt gaatttgaaa tgaaaaaaag
4741 ttggtatcct ttatataagt gcttgtatcc tcgtagtata ataaatcctt atacgcatga
4801 acggatattg gtcggttgtg ataagtgtgc cgcttgtatg caacgtcgtt ctgctcgttc
4861 tcagctgcaa atcagattgg aagctagaga ttcgtataaa gtgatattcg gtaccttgac
4921 atttgccaat tcatacgttc ctcgtgctgt ccttattccg aacggtaata ttcatttgga
4981 tggttgtgaa tacaatttgg ttgtaaaaga taccggtgaa atccttggta ctgaacgcct
5041 aaatcccaaa gacgttgagg acttgaaaga aaaactatat ctgtttggtg atattccgta
5101 cttgtataaa agagatgccc aattatttat taaacgttta cgtaaatacc tttctaagca
5161 ttatggagaa gaaaagatta gatactatat ttgtggcgaa tatgctcccg aacacttccg
5221 tccacatttc catttcctcg tcttcctaca atccggccag ttccttgaaa attccggaaa
5281 agtcttatcg gactatccgc aatggacttg ggaacacacg acggattgtt cacccgatac
5341 gccggtctcc aagattgagg acgctatacg tcagagttgg tcgtttggtt ctgtgcaaac
5401 cgatatcgcc aaaggagaca ctgcttccta cgtttcgggc tacgttgctg gctctgtgcc
5461 tctacccaaa atatttaaaa tgcgctccgt ccgtccgttc tcgcttcatt ctcaattcct
5521 cggtgtccgc tttcttaaaa gtcaacgaac gcaaatatac caaacttccc ctcgtgaatt
5581 tgtgcgtagg agctttgtcg acaatggtgt tgcttcagag tatgttttat ggcggtcggc
5641 ttacgctgtc ttttacccca aatgtaaagg atattctgat aagtcttcac gtgtgcgtct
5701 tacagcttat cgaatctatg ccgccgcaat ggaagagtat ggtacggaaa tcccgctcat
5761 cgaagtctcg tcgcaaatag ctgaatggat atatgaatca caaatgtatg acggtgtgtt
5821 tcctcgtttt ggcttgtcac cctccttagc ggtattgata cggtttttct tgtcctctct
5881 gcctcgtcac aatcgtgtgt ccgattctta caataaacgg cgtatattgg attcatggat
5941 atgttctata tatagtcagt tgttgctctc gaagcacttt ctgaattttg tctgcaatgg
6001 tgactatact attaaggttt caaaatatta tcttcagaag atagaagagt tctatgatta
6061 tatagagcaa atgcgtctag ctgacttcta taaggctcag caagattatt acggtactga
6121 cttcgtcaca gacgaaacgt tgccggatat tgagttcttc tacgacaatg gagattttga
6181 ttttgaaaaa ttgcaacaaa gtgaaatata tcaacgttac gttactcatg taaatcgcat
6241 acaacacgat tgtatgaaac atcgaataca gaatgaacgc aatatgaaat ttgcggataa
6301 atagtattaa tcttttaatt ttgtgctt
//
