LOCUS MN379649 4992 bp DNA circular PHG 04-APR-2020
DEFINITION Chicken microvirus mg8_95, complete genome.
ACCESSION MN379649
VERSION MN379649.1
KEYWORDS .
SOURCE Chicken microvirus mg8_95
ORGANISM Chicken microvirus mg8_95
Viruses; Monodnaviria; Sangervirae; Phixviricota;
Malgrandaviricetes; Petitvirales; Microviridae; Microvirus.
REFERENCE 1 (bases 1 to 4992)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4992)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (26-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4992
/organism="Chicken microvirus mg8_95"
/mol_type="genomic DNA"
/isolate="mg8_95"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720936"
/country="USA"
/collection_date="2017"
CDS join(4145..4992,1..4)
/note="similar to PHA00330"
/codon_start=1
/transl_table=11
/product="replication initiator protein"
/protein_id="QIR82393.1"
/translation="MGFNVTDGLPFPCGQCLACRINKRRVWTLRLMLENYFHEKASFV
TLTYSDENLPYTFEGTPCLCKRDVQLWLKRLRKHFSDRQIRYYLAGEYGTRTRRPHYH
VLVFGLSPAELDCLYLQYSGKSGEGRHSLLSDSWGFGLVHVGDVQRESIQYVAGYVTK
KFTKRGDGNVPEFALMSRRPGIGAAAVAEIASVLQHYNLEKETRRELRVDGKTWPLGR
FLQGKLAESLGVDFGTGEYVKRLAEQWVQANRRGADFLEYLVQSDAGRYAKLEARDKI
FNQRNTL"
CDS 1..1566
/note="similar to PHA00363"
/codon_start=1
/transl_table=11
/product="major capsid protein"
/protein_id="QIR82392.1"
/translation="MKKRAKFNLSNFHNCTLKMGQLYPVHLQEVLPGDSIQQSTSVFL
RFAPMVAPVMHPVYMFAHTFFCSSRVLGNLVNWDFESFITGGDDGNDVQTIPQLVLNA
TNSPVGSLADAFGLPMQSLASGNTFSVNMLPFLMYYLIWNEYYRDQDLQTEVSFEDWI
SGYTPSSLSLLAPCWSKDYFTTARPWPQKGPEVTIPVNLTSGGSPLISAQTTISGNGT
PQVKFVGGNGLAQTLAKQSDSTNVFYNDESTGSPSGMGRMQWIDPKLSAQTDITWNGG
PDTTGNITVNDLREGFAIQRFEEHRALWGSRYEDLLRYLGVRPLDARLQLPEYLGGFS
SPVQFSEVLQTSAGETGGVGDLYGHGISAARGRRIRRFIPEHGYIMTLLCVRPISVYA
QGIERLWKKSTKYDFWTKELEHIGQQEVLNSEVFADGSTEDGNTFGFQNRYDEYRRGV
SVVTGEFRTNQDFWTLARIFANRPALNSDFVECTPSDRIFQVGEQNSDQLYAMVKNNV
IAKRLVSKNGNPI"
CDS 1446..1937
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82390.1"
/translation="MYSFRPYFSGWRTEFGPALCDGQKQRHRQTFGVQKRQSHLRGVK
MAKLNSRGHEVVSSVPFEPGVRLGRPPRETLDQQIRRMVMLQQMEKEDAIKDEADLME
DLNDFSDPSVSDDLLGPSRYEVPEDVPDAFSAESYRAQQKEKKDSPKPVDSSSESAAL
AGE"
CDS 2097..2558
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82391.1"
/translation="MARRRQKRDHSSYTPSPSGGLLRSQMRAPLLERSRLLARRSVRE
MDAVRRLQVEDLRREKRHIESNFATQTYRREDGSKAPVVGREVHTHRMRKQRMPPRLR
FDFQDPERTLVCQRRKIRRAVVFAMRKAGKRGRGNRKARWTAKSYISCGKR"
CDS 2566..3423
/note="similar to PHA00327"
/codon_start=1
/transl_table=11
/product="DNA pilot protein"
/protein_id="QIR82389.1"
/translation="MSFFDKAGGSIVGGAIGAIGSLIGGGISAHNANSLAGMNYKAQK
EFAQNGIRWRVEDAKRAGIHPLYALGASTSSYSPVQGYSGDYGMSDAFSQMGQGVARA
AQAKMTKEERDREDARQEMQDVFNLARFNMEQRRQEAEIQLIDSEIARNKAASEVALR
STGVPPAMPSGPMLIPGQGDAPPSGTKEAPYWDRSIPTYGFLHDARGVKTEVLPSDPL
SQRTEDKAFIEWAPWIKSTMADIGAKYFGQEVDGYWWHGDDKGYLPYPPKKKSIDAVR
WARSREGYY"
ORIGIN
1 atgaaaaagc gtgcaaagtt caacctttcg aacttccata actgcactct gaagatgggg
61 cagctttacc ctgtccacct tcaggaagtg ctccccggtg actccattca gcagtccacc
121 tcggtttttc tgcgttttgc cccgatggtt gctccggtga tgcatcctgt ctacatgttc
181 gctcatacct tcttttgctc ttcccgtgtt cttggtaatc tggtgaattg ggatttcgag
241 agctttatta ctggtggtga tgatggcaat gacgttcaga ctattcccca gctcgttttg
301 aacgctacca attcgcctgt cggctctctt gcggatgctt ttgggcttcc tatgcagtcc
361 ttggcctctg gtaatacttt ttcggtcaac atgcttccgt ttctcatgta ctatctgatt
421 tggaatgagt attaccgtga ccaggacctc cagacggaag tttctttcga ggattggatt
481 tctggatata ctcctagttc cctttctctt ctggctccct gctggtcgaa agactacttc
541 acgactgccc gcccgtggcc tcagaaaggc cctgaagtga ctattcctgt aaacctcact
601 tctggtggca gtcccctcat ttctgcacaa actaccatct ccggaaatgg gacgcctcag
661 gttaagtttg ttggtggaaa tggtcttgct cagacgctgg caaaacagtc tgacagtaca
721 aatgtttttt acaacgacga atcgaccggc tctccttctg gtatgggccg tatgcagtgg
781 atcgatccta agctttcagc ccagaccgat atcacttgga acggtggtcc cgatactact
841 ggcaatatca ctgtcaatga cttgcgtgaa ggtttcgcta ttcagcgctt cgaagagcat
901 cgcgccctct ggggttcccg gtatgaggac cttcttcggt atctcggtgt gcgtcctctg
961 gatgcccgtc ttcagcttcc ggaatatctg ggcggcttct cttcccctgt gcagttcagt
1021 gaagttcttc agacctccgc cggcgaaact ggtggcgttg gtgacctcta tggacatggt
1081 atttctgctg ctcgtggccg gcgtattcgc cggtttattc ctgagcatgg ttatatcatg
1141 acgctgcttt gcgttcgccc catctccgtt tacgctcagg gcattgaacg cctttggaaa
1201 aagtccacca aatatgattt ctggacaaag gagctggaac atatcggcca acaggaagtt
1261 cttaattcgg aggtttttgc tgatggttcc accgaagatg gtaacacgtt cggcttccag
1321 aaccgttacg atgagtatcg gcgaggcgtt tccgtggtta ccggtgaatt caggacgaat
1381 caggacttct ggacgctcgc gcgcattttt gcgaaccgcc ccgcgctcaa ttcggatttc
1441 gttgaatgta ctccttccga ccgtattttt caggttggcg aacagaattc ggaccagctt
1501 tatgcgatgg tcaaaaacaa cgtcatcgcc aaacgtttgg tgtccaaaaa cggcaatccc
1561 atctaagagg tgtaaaaatg gcaaaactta actctcgcgg tcatgaggtt gtttcctccg
1621 ttccttttga gcccggcgtt cgtctcggtc gtcctcctcg tgagactctg gaccagcaga
1681 ttagacgcat ggtcatgctt cagcagatgg agaaggaaga tgctatcaag gatgaggctg
1741 accttatgga ggacctcaat gacttttctg atccttccgt ttcggacgac cttttaggtc
1801 cttctcggta tgaagttccg gaagacgtcc cggatgcttt tagcgctgag tcttaccgcg
1861 ctcagcagaa ggaaaaaaag gactcgccga agccggtaga ttcgtctagc gaatctgccg
1921 cgctggcagg cgagtaaccc cccccctcac ttagcacagt acccttcttg ttctgtactg
1981 tgctaagtga cacttcaatc aaaagttgtt cctggaacaa tcaaaagttg ttcctggaac
2041 aatccctgga acaatcaaaa gttgtccctg gaacaatcaa aagttgagag ctccggatgg
2101 ccagacgcag acagaagcgg gaccactctt cttacactcc ctccccctct ggtggcctcc
2161 tcaggtcaca gatgcgcgct cctcttttgg agcgctcgcg cctcttggcg cggcgttctg
2221 tgagagagat ggatgccgtc cggagactcc aagtggagga cctgcgccgt gaaaagaggc
2281 atatcgagtc gaactttgcg actcaaacat atagacgtga ggatggaagt aaagcccctg
2341 ttgtcgggcg agaagtacat acacatcgca tgcgtaagca aaggatgccc cctcgcttgc
2401 gctttgattt tcaagacccc gaaagaactc tggtctgtca acgaagaaaa attcgccgcg
2461 ctgttgtctt tgccatgcga aaggctggca aaagaggtcg cggaaatcgc aaagcaagat
2521 ggacagcaaa aagttacatc tcttgcggaa aaaggtaggt aagtgatgag tttttttgac
2581 aaggcaggtg gttccattgt tggtggtgca attggtgcta tcggttctct tattggtggt
2641 ggtatttcgg ctcataatgc gaattcttta gctggcatga attataaggc acagaaggaa
2701 ttcgctcaga acgggatacg ctggagggta gaagatgcaa agcgagccgg gattcatcct
2761 ctgtacgctc tcggagctag cacgtcttct tatagtcctg tgcagggcta ttctggagac
2821 tatggcatga gtgatgcctt ctctcagatg ggacagggcg tagctcgcgc tgctcaggca
2881 aagatgacca aggaagagcg tgatagggaa gacgcccggc aggaaatgca ggacgttttt
2941 aatcttgccc gtttcaatat ggaacagcgc cgacaggaag cggagattca gcttatcgat
3001 tctgagatag ctcggaataa agccgcctcg gaagttgccc ttcgttctac tggcgttcct
3061 cccgctatgc cctccggccc tatgttgatt cctggtcagg gtgatgctcc tccttctggc
3121 acaaaagagg ccccctattg ggataggagt atccccacct atggtttttt gcatgacgcc
3181 agaggtgtaa aaactgaagt tcttccttct gacccccttt ctcagaggac ggaagataaa
3241 gccttcattg aatgggcacc ttggataaag tcgactatgg ctgatattgg tgccaagtac
3301 ttcggtcagg aggttgacgg ttactggtgg catggagatg acaagggata tcttccttat
3361 cctcctaaga aaaagagcat cgacgctgtc cgttgggcac gttcccgtga gggatattat
3421 tgagtttttt accccggttt ttccggggtt ttttttgctt aaaaagtagt tgacaaaagg
3481 tgacaaaaaa gtgtattttg aggtatcaaa aatggaggca aaaatggcta tttttatgaa
3541 ccccatgact ggttctgttg ctcctcttga agaatggaag caggattttg cggacatgtc
3601 ccccctcgag cgtgagacgc tttggggcgg ccctgatttt gaggatgctg gacttattca
3661 ggtcgagtgg aattgtgaaa ctgaacagta tgaggagatt gtgtagaaaa ggattaggaa
3721 aaaggaagtt tttatggctc tgtatggtta tggtggcgat tgggattcta agtctgttga
3781 agatttggaa gctggtcttg gtcttcttgt tttccttcgt ttcgtttgtt atcggaattt
3841 gcagcatttg aagtcttctg gtgcttctat ttctgagatt cgggagacgt ctaaccgttt
3901 ggccgcctac gaaaaaggca tttctgagct taaggaatat ttgaaatctc gttcttctgt
3961 acctgaaaac taattggagg tgttgtatgg cttttcgtcg tcgtcgtcgt cgtcgtcgtg
4021 gtcgtagaat gaatgttttc cgccgccgca ttggcactcg tatgtgaggc agttgatttg
4081 gttgctgtgt cgtaaccctt acattagaga ccgtaccgga aaaattttgg tccgtggcaa
4141 agacatgggc tttaatgtta cggacggtct tccttttcca tgtggacagt gtttggcgtg
4201 tcgtattaat aaacggcgcg tttggactct ccgtctcatg ttggagaact actttcatga
4261 aaaagcttct ttcgtcactc ttacctacag tgatgaaaat ctgccgtata cttttgaagg
4321 tactccgtgt ctttgcaaaa gagatgtcca gctctggctc aaaaggctcc ggaagcactt
4381 ctcagacaga caaatccggt actacttagc aggcgagtat ggaacaagaa ctcgtcgccc
4441 acactatcat gttcttgtgt ttggccttag ccctgctgaa cttgactgcc tgtatttaca
4501 atactctgga aagtccggtg agggacgtca ttctctgctt tctgatagct ggggttttgg
4561 tcttgtccat gttggtgatg tccagcgaga gagcattcaa tatgttgctg gatatgtaac
4621 gaaaaaattt acaaagagag gagatggtaa tgtccccgaa ttcgctctca tgtcccggcg
4681 tcccggcatc ggagctgcgg cggttgctga gattgcttcc gtattacagc actataacct
4741 tgaaaaagaa acccggcgag aacttcgtgt tgacggtaaa acgtggccgc tcggccgatt
4801 cttacaaggt aaacttgccg aatctctcgg cgttgacttt ggaactggag aatatgtcaa
4861 acgtcttgcg gaacaatggg ttcaggccaa cagacgagga gccgatttcc ttgagtacct
4921 tgttcagtcg gacgctggac gttacgccaa actagaagcc cgcgataaaa tcttcaatca
4981 gaggaatacc tt
//
