LOCUS MN379650 4853 bp DNA circular PHG 04-APR-2020
DEFINITION Chicken microvirus mg8_102, complete genome.
ACCESSION MN379650
VERSION MN379650.1
KEYWORDS .
SOURCE Chicken microvirus mg8_102
ORGANISM Chicken microvirus mg8_102
Viruses; Monodnaviria; Sangervirae; Phixviricota;
Malgrandaviricetes; Petitvirales; Microviridae; Microvirus.
REFERENCE 1 (bases 1 to 4853)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4853)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (26-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4853
/organism="Chicken microvirus mg8_102"
/mol_type="genomic DNA"
/isolate="mg8_102"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720931"
/country="USA"
/collection_date="2017"
CDS 1..1890
/note="similar to PHA00363"
/codon_start=1
/transl_table=11
/product="major capsid protein"
/protein_id="QIR82397.1"
/translation="MKRSKFNLTHLHSTTGEAGFLIPFFLQSTLPGDRYRLSLTSFVR
AQPMLAPLMHQVKFYTQYWFVPYRILWDNWEEFITGGQDLTSAPNFPVVTSPAGGWQA
GSLADYFGFPIKQAGIEVSAMPFRAMAEIWNTRYRDEDIQPEVAISYADGKDTTTSTT
LLSPSWKRDYFTTARPFTQRGTDITVPITSSDNTTQYYHKHQYTARFVFGLFDNLDIS
QSSIKIEKLYGTAHIYNETFTGTNIRNIPQNIWNDIRTAFLSDSSESYRTQLSTEAFD
ALKSAPLNENRRIFFTTGTLNFLDAPNSIRVTLSSFPVLVRYSFNEDTTVPQPGADTG
LLFDGARVFDNDGPGTAGGFAMYLIDSSLSNVAPYDMKLTIYATLSQSGQVSIRDLRA
SSALQRYAERSLQWGNRYEEFIQREFGIKPRDSRIQRPEYLGGGSGNLQISEVLQTAE
GADTGVGTMRGHAVAGVGQRPIKFTCPEHGLIIGLISIRPVPVYTQGIEREFLKRSRL
DFFTPELANIGMQEVLQQELYATAGNKDVIFGYSDRYQEYRYRKPMVTGQFRTDFAFW
NMARQFSQPPALNPDFLDMSKSRASFKRPFAVQSDATHSFLMMLRNNVRAWRPIPKRA
KNILR"
CDS 1902..2360
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82395.1"
/translation="MPCFSEKVLANKVKAGWTETLDTTPLFVPTGMQRPETSKQTMAR
LMLESGVISRDDYDKMLGVEFDTSDDGVLSFDFDDDFDVDFDAERFTQTSLAEYEEAL
DFKNTQSKEDVAQESEAIAQEAIASGARKEDLQNGTENDHKSPDTANASE"
CDS 2308..2691
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82396.1"
/translation="MARKTTTNRLIRQTQANSLRHSGHPLTYVRYLTGSRLSAFSGNF
RNDKTARVSSQSGARFWNKSSTPLEYLGVRSVERVQASLKRDVDRQTRICNHRKERRE
VLFAKGKVGGRHKPPTYTINSLVRC"
CDS 2692..3519
/note="similar to PHA00327"
/codon_start=1
/transl_table=11
/product="DNA pilot protein"
/protein_id="QIR82394.1"
/translation="MADPVSTVGVLGAGAISAGSGLLGSVINSVLGNKASKADWQRNY
NAQKEFAQNSIQWRVQDAQKAGINPLYAMGNSPGYTPSSSFNNESIGVGIAQAGNAMA
EAMGQLQMMQLLSNIENTKADTAKKEAEASVTLGQSPKVVPPVTKTTSPKKAEVTMAP
NIQYLNNFARYGDGFIGYPSEDLLDASSEASIFNPLSLPVAIDAFDAQYRSMPEHFQR
SIEYAIPGADKWISNVSAERSWSSYGRPVYKVHWKKGTPQKIRDMYNSLLNRARSAR"
CDS 3796..4674
/note="similar to PHA00330"
/codon_start=1
/transl_table=11
/product="replication initiator protein"
/protein_id="QIR82398.1"
/translation="MKCEHPYMKYEPSVDSIVPFPCGHCYACRSAQARVWVLRNFLES
QMHDNFAFVTLTYDNQHLPTGSNLESSAISSFMKRLRYYLPYKVRYYGCGEYGEKRGR
PHYHLLIFGLKENDYVYVNQAWNKGRVDVQTPRDPVKSIAYTATYVTKKIGKIDAWCK
SNRRQVAPFQRCSLSLGLDFALKHIPLFTTRLRVFGKVWYVGRYLRNKLAEKFSVLEE
IKQAGLQMLSVEMEDVLTRFFTETSGKFVNHLGREVAYKLYSRETALVAWKHCYNGDF
ELQKARSKLFSRDRFG"
ORIGIN
1 atgaaacgaa gtaaattcaa tcttacacat ttgcattcta cgactggcga agctggcttt
61 cttatcccct ttttcttgca atccacactc cccggcgacc gttatcgcct ctctctcact
121 tcttttgtcc gtgctcagcc tatgcttgcc ccgttaatgc accaagtgaa gttctacaca
181 cagtattggt ttgtcccgta tcgtattctt tgggataact gggaggaatt tatcactgga
241 ggtcaagatt tgacttctgc tccgaatttt cctgtcgtta cttctcctgc tggaggttgg
301 caagctggta gtcttgccga ttactttggc ttccctatta aacaggcagg tattgaagta
361 tctgctatgc cattccgtgc tatggctgag atttggaaca ctaggtatcg tgatgaggac
421 attcaacctg aagtagctat ttcttatgct gatggcaaag atacaactac ttctaccact
481 ttgctttcac catcttggaa gcgagactac tttacaaccg ctcgtccatt tacacagaga
541 ggaacggata ttactgtgcc tatcacaagt tcggataaca ccacacagta ttatcacaag
601 catcaatata ctgctcgctt cgttttcggc ttgtttgata atttagatat ctctcagtcc
661 tctattaaaa ttgagaaatt gtatggtact gcacatattt acaacgaaac atttactggc
721 actaacattc gcaatattcc tcagaatatc tggaatgata ttagaactgc ttttctctct
781 gattcttctg agtcatatcg cactcagcta agtactgaag cttttgatgc tttgaagtct
841 gctcctttaa atgaaaatcg tcgaattttt ttcacaactg gtactcttaa ttttctcgac
901 gcgccgaatt ccattcgtgt taccttgtcc agtttccctg ttttggttag gtattcattt
961 aacgaggaca ctacggtacc gcaacccggt gctgatactg gtttgttgtt tgatggcgct
1021 cgtgtgtttg acaacgacgg tcctggtact gctggtggtt ttgctatgta cctgattgat
1081 tcctctttgt ctaatgttgc cccttacgat atgaaactca ccatttatgc cactctttct
1141 cagtctggtc aagtttctat tcgagatttg cgcgctagtt ccgcattgca acgctacgct
1201 gaacgttcgc tccaatgggg taaccgctat gaggaattca ttcaacgtga atttggtatt
1261 aagcctcgcg attctcgtat tcaacgccct gagtatttag gcggtggttc tggaaacctt
1321 caaatttccg aagtgcttca aactgctgaa ggtgccgata ccggtgttgg aactatgaga
1381 ggacacgctg ttgctggtgt tggacaacgt ccgattaaat tcacttgtcc cgagcacggt
1441 ttgattatag gtttgatttc cattcgcccc gttcccgtct atactcaagg gattgaacgt
1501 gagtttctta agcgttctcg tttggacttt ttcacgcctg aattggctaa cattggtatg
1561 caggaagtct tgcaacaaga gctctatgct acggctggca ataaagatgt gatttttggt
1621 tactctgata gatatcagga atatcgctat cgtaagccta tggttactgg tcagttcaga
1681 accgattttg cattttggaa tatggcacga caatttagcc aacctcctgc gcttaatcca
1741 gattttctgg atatgtctaa gtctcgtgct tcttttaagc gtccttttgc tgttcagtct
1801 gacgctacac attctttttt aatgatgttg cgtaacaatg tgagagcttg gcgacctatt
1861 cctaagcgag ctaagaatat tttaaggtaa ggaggtatat tatgccgtgt ttttccgaaa
1921 aagtattagc aaataaagtt aaagctggtt ggactgaaac tttggatact actccacttt
1981 tcgttcctac tggtatgcaa agaccagaga cttctaagca aactatggcg cgtttgatgt
2041 tagagtctgg cgtgatttct cgtgatgatt acgataaaat gttaggagtg gagtttgata
2101 ctagcgatga tggcgtactt agctttgatt ttgacgatga ttttgatgtt gattttgacg
2161 cggaacgctt cactcaaaca tcgctcgcgg aatacgaaga agctctcgat tttaagaaca
2221 ctcagagcaa agaggatgtg gcgcaagaaa gcgaagcgat tgcgcaagag gcgatagcct
2281 ctggagctcg gaaggaggat ttgcaaaatg gcacggaaaa cgaccacaaa tcgcctgata
2341 cggcaaacgc aagcgaatag cttgcgccat agcggacatc ccttgactta tgtccgctat
2401 ctgacaggct cccgcctgtc agccttttct ggtaatttta gaaacgataa aacagcacgc
2461 gtaagctcgc aaagcggtgc tcgtttttgg aataaatcat ctactccatt agagtatttg
2521 ggcgttcgct ctgtcgaacg cgttcaagct tctctaaaac gtgatgtgga tagacaaact
2581 agaatttgta atcatcgtaa agaacgccgt gaagtgcttt ttgccaaagg caaagttggt
2641 ggtcgtcata aacctccgac ttatacgata aattctcttg tgaggtgtta aatggctgac
2701 cctgtatcga ctgttggtgt tttaggggct ggtgctatct ctgctggcag tggtctttta
2761 ggttctgtga ttaattctgt tctcggcaat aaagcctcta aggccgattg gcaaaggaat
2821 tacaatgcac aaaaagaatt cgcgcaaaac tcaattcaat ggagagtgca agacgctcaa
2881 aaagctggta tcaatcctct ttatgctatg ggtaactccc ccggttacac tcctagctct
2941 agcttcaata atgagtctat tggagttgga atagctcaag ccggtaatgc tatggctgag
3001 gcaatgggac aattgcaaat gatgcaactt ctttcaaata ttgaaaacac taaagccgac
3061 acggcaaaga aagaagctga agcttcggtc acattaggtc aatctcctaa ggtagttcct
3121 cccgtgacta aaacgacttc tcccaaaaaa gccgaagtta caatggctcc caatattcag
3181 tatttgaaca atttcgcccg ttacggtgat ggcttcattg gttaccctag cgaagatttg
3241 cttgacgctt cttctgaagc tagcattttt aatccgttgt cgttgcctgt tgctattgat
3301 gcatttgacg ctcaatatcg ctcaatgcct gagcattttc agcgctccat agagtatgct
3361 attcccggtg ctgacaaatg gatttctaat gtaagcgcgg agcgctcttg gtcgtcctat
3421 ggacgccctg tgtataaagt gcattggaaa aaaggcacac cgcaaaagat tcgcgatatg
3481 tataattctt tgctaaatcg cgctaggtct gcgcgttaat cttgtgaaag gaggttaata
3541 tgaaagaaaa agtcataatg tggcttggtt ggattgttgc tgcttgtgaa gcggtcgtta
3601 attttttagg aactgtttaa ggaggtttta tggcatttcg ttggtataaa cgtcgtttga
3661 aacgctgggg taaaaggtat aaaaaagcgt ttcgaaggaa atttaagcgt cgtcttaagc
3721 gtagattccg ccgtaaattc aggaggagac ttcgccggat tggttaccgg atgtagtaac
3781 tgttaggagg ttaaaatgaa gtgcgaacac ccatatatga agtatgagcc cagtgtagat
3841 tcgattgtgc cgtttccttg cggtcattgc tatgcttgtc gttctgcaca agcgcgtgtt
3901 tgggttttga ggaatttcct tgaatctcaa atgcacgaca atttcgcgtt tgtgacttta
3961 acctatgata atcagcattt gcccacaggt tctaatttgg aatctagtgc tatatcgtct
4021 tttatgaagc ggttaagata ctatctgcca tataaagtgc gatattatgg ctgtggcgag
4081 tatggtgaga agcgcggtcg tccgcattat catctactca tatttggttt aaaggagaat
4141 gactatgttt atgttaatca agcttggaat aaaggtcgtg tcgatgttca aacacctcgt
4201 gaccctgtta aaagtatcgc gtatactgct acgtatgtta cgaaaaaaat tgggaaaata
4261 gatgcttggt gtaaaagtaa taggcgacag gttgctccgt ttcagcgttg ctctctttct
4321 cttggtcttg attttgcatt aaagcatatt cctcttttta ccacgcgact tcgcgtcttt
4381 gggaaagttt ggtatgttgg acgttatctc cgaaacaaac ttgccgaaaa attctccgtt
4441 ctcgaggaga ttaaacaagc tgggttacaa atgctatctg ttgagatgga agatgtttta
4501 acgcgttttt tcactgagac tagcggtaaa tttgtaaatc atcttggacg cgaggtcgct
4561 tataaacttt attcgagaga gacggcgtta gtcgcttgga aacattgcta caatggcgac
4621 tttgaattgc agaaagcgcg ttctaagtta ttttcgcgcg atagatttgg ttaaaggata
4681 ttctatgaga aaattaccac ctgaagttga taaggcttta gataacatca ttcttgctct
4741 ttctacattt gtcgagagca cttatgagga ttctgaagtt gatgaagtcg atttggcact
4801 tgccaaaaaa gatttttttg ttgctatgat gtatttattt ggaggagata aca
//
