LOCUS MN379651 4743 bp DNA circular PHG 04-APR-2020
DEFINITION Chicken microvirus mg8_109, complete genome.
ACCESSION MN379651
VERSION MN379651.1
KEYWORDS .
SOURCE Chicken microvirus mg8_109
ORGANISM Chicken microvirus mg8_109
Viruses; Monodnaviria; Sangervirae; Phixviricota;
Malgrandaviricetes; Petitvirales; Microviridae; Microvirus.
REFERENCE 1 (bases 1 to 4743)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4743)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (26-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4743
/organism="Chicken microvirus mg8_109"
/mol_type="genomic DNA"
/isolate="mg8_109"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720932"
/country="USA"
/collection_date="2017"
CDS 1..1548
/note="similar to PHA00363"
/codon_start=1
/transl_table=11
/product="major capsid protein"
/protein_id="QIR82401.1"
/translation="MKSVMSHQFSRIPSVNIQRSTFDRSHGYKTTFNAGYLIPFFCDE
VLPGDTFNLDTTLFARLSTPIVPFMDNLFLETFFFYVPTRLVWDNFQKFMGEQINPGD
STDYLVPTIKLSGAPARVGGILDYFGIPPGVDNLEINALPFRAYAQIWNDWFRDENLQ
DSLEYSHGDTDTGVSIPILRRGKRHDYFTSCLPWPQKGESVDVPLSADIVADGPFYLE
SSSTKFSGFWGDDGAHWRSSIGNTQIGDGSNPLRYHGGLKINTSTNSPITINDLRTAF
QVQKLLERDARGGTRYTEILRSHFGVVSPDARLQRSEFLGGGSARININPVQQTSASD
STSPQGNLAAYGVVASRNHSFTKSFVEHGYIIGLVNVRADLTYQQGLNRMWSRKTRYD
FYWPVLAHLGEQAVLNKEIYAQGTDVDDDVFGYQERYAEYRYKPSLITGLLRSTAPQT
LDVWHLSQKFESLPKLNDEFIVDNPPIERVLAVQNEPQFILDAYFNLKCTRPMPLYGV
PGLVDHF"
CDS 1558..2289
/note="similar to PHA00327"
/codon_start=1
/transl_table=11
/product="DNA pilot protein"
/protein_id="QIR82399.1"
/translation="MGFLSKVVGSIAGSAGSILGNVVGGVLGMAGQHSANSANAQASA
DQRKWLEYMSNNAHQREVADLRAAGLNPILSATGGSGASTPQGQIISSQNEMASLQEG
IQSALNTAYSYADLDNKMHQTDINASAVNSQNALNKAHANNLDAVTALNTVQVQTEAE
RQALLRAQSAQAFALTNLYNEQAKGVEEDNYKKVVTRIPYKIANDLYDNVRVHSAKEA
RKTDDVMDYVRKHGHLPDMTNSARY"
CDS 2556..3551
/note="similar to PHA00330"
/codon_start=1
/transl_table=11
/product="replication initiator protein"
/protein_id="QIR82403.1"
/translation="MPCYHPITMYRVKSGRNPETGAWSLTTKLQDAYRDMPVKIPCGQ
CIGCRLNYAKFWAVRCMHELYTSSNGYFLTLTFDDDHLAPDLSLHKEDFTLFIKRLRK
RYGNGIRYYHCGEYGDLSARPHHHAIIYNVPITDLCLLSYSHGQPYYTSDTISRLWPY
GYHVIGNVTFESCAYVARYCTKKITGDRAAAHYNGRLPEYVTMSRRPGIGYDFYQKYK
KDMYAIDKVILGGGKSCNIPRYYDKLCEQDHTLNIEQIRDQRLKNFEKRYDLRGFVAS
DIAKYKLCVDNVDKQLQDIGAVLRRIPSVLESRQRLDVVEECRKEAFKRYQRNKV"
CDS 3557..4042
/note="Simialr to PHA00198"
/codon_start=1
/transl_table=11
/product="nonstructural protein"
/protein_id="QIR82402.1"
/translation="MSDFKSKLGVNYRIDEIAQDEPLSSQFSCFLRKGVYGLWDKTAC
IFSSHFICNNDIAAQRSFVDCMGQDTGVIAGYFRDFALYKLAEIDERGNLKSFDDEQM
LLDGTVAWEMYQDKEQFRQQSQDKFAKKLKVLHDDDIRKSKLNAAKANPNAANASGAA
S"
CDS 4131..4673
/note="similar to PHA00099"
/codon_start=1
/transl_table=11
/product="internal scaffolding protein"
/protein_id="QIR82400.1"
/translation="MDSIFDDMSTDATIYSRYNRPVVSGVKFDKPSITQQHFKEQCDI
NRILDAYRVKARAMGVSVVELMPKLGSEQFADVSNVDDYLTAQNRIAQVNQMFEALPA
EVRRSYDDDPANFVAALADSQNYRKFADLGIMDINEVIEYEDVIAKQSGVVAGDNQHA
KSDTVVSATEQKGPVNQAAQ"
ORIGIN
1 atgaaatctg taatgagtca tcagtttagc cgtataccgt ctgttaatat acagcgatct
61 acttttgacc gtagtcatgg ctataagaca acatttaatg ctggttattt aataccgttt
121 ttttgtgatg aggttttgcc tggtgatact tttaatctcg acactactct tttcgctcgt
181 cttagtaccc ctattgttcc tttcatggac aacctttttt tagagacgtt ttttttctat
241 gtcccgactc gtttggtctg ggataatttt caaaaattca tgggtgagca gataaatccc
301 ggcgatagta ctgattattt ggtacctaca atcaaattat ctggtgctcc tgcccgtgta
361 ggcggtatat tggattattt tggcattcca cccggagttg ataatcttga gattaacgct
421 ctgcctttta gagcctatgc ccaaatctgg aacgattggt ttcgcgacga aaatttacag
481 gatagtttag agtattctca tggtgatact gatactggtg tatcaattcc tattttgcgc
541 cgtggtaaac gtcatgatta ttttacgtct tgtttgccgt ggcctcaaaa aggcgagtct
601 gtagatgtcc ctttgtccgc tgatattgtt gctgacggtc ctttttattt agagtcatca
661 tctactaaat ttagtggttt ttggggtgat gatggagctc attggcgatc atctattggt
721 aatactcaaa ttggtgatgg tagtaatccg ttacggtatc atggtggttt aaaaattaat
781 acatctacta atagccctat tactattaat gatttgcgta ctgcttttca ggtacaaaaa
841 ttgctcgagc gagatgcccg cggtggtact agatatacag agattttgcg atcacatttt
901 ggagttgtat ctcccgatgc gcgtttacaa cgtagtgagt tccttggagg cggttctgcg
961 cgtattaata taaatcctgt acagcagact tctgcttcag attctacctc tcctcaaggt
1021 aacttggcag cttatggtgt tgtagcatct cgtaatcata gttttacaaa gtcgtttgta
1081 gagcatggtt atattattgg tttggttaat gttcgtgcag atttgactta tcagcaagga
1141 cttaatcgta tgtggtcacg taagactaga tatgattttt actggcctgt actcgctcat
1201 cttggtgagc aagccgtact taataaagag atatatgcgc aaggtactga tgttgacgat
1261 gacgtttttg gatatcaaga gcgttatgct gagtatcgtt ataagccgtc tttgatcact
1321 ggtcttttgc gtagtactgc tccacagact ttagatgttt ggcatttgag ccaaaaattt
1381 gagtctttgc ctaagcttaa cgatgagttt atcgtggata atcctccaat tgagcgtgta
1441 ctcgcagtgc aaaatgagcc tcaatttatc ttggatgctt attttaatct taagtgtact
1501 cgtcctatgc ctttgtacgg tgtacctgga cttgttgacc atttctaagg tgattatatg
1561 ggtttcttaa gtaaagttgt tggtagtatt gcaggtagtg caggcagtat attaggtaat
1621 gttgttggcg gtgttttagg catggctgga cagcatagtg ctaatagtgc taatgcccaa
1681 gcatctgccg accaacgtaa gtggttagag tacatgagca ataatgcaca tcaaagagag
1741 gttgcagatt taagagctgc aggtcttaac cctattttaa gcgccactgg aggctctggt
1801 gcctctacac cgcaaggtca gattattagc agccaaaatg agatggcttc gctgcaagag
1861 ggcatacaga gtgcccttaa tacagcctat agttatgctg atttggataa taagatgcac
1921 caaactgata ttaatgctag tgctgttaat agtcaaaacg ccttaaataa ggcgcatgca
1981 aataatttgg atgctgttac ggcacttaat actgtacagg tacagactga ggcagagcga
2041 caagctcttt tacgtgctca atctgctcaa gcttttgcgc tcactaattt gtataacgag
2101 caagccaaag gagtcgagga ggataattac aaaaaggtcg ttactcgtat accttataag
2161 attgctaatg atttgtatga taatgtcagg gtgcactctg ccaaagaggc tcgtaagact
2221 gatgatgtta tggattatgt gcgcaaacat ggtcatttgc ccgatatgac taactctgcg
2281 aggtattagt aatgattaag taatttgtta tgtctttgat ttttttgttt ttttttattt
2341 ttttgaggtg atgttatgag acgtagaact ttaagacgta ttgttaaacg tattgtaaga
2401 aggagaagac gcagatgact agacgcagac gtataagtag gcgtgcatcc aagaagctat
2461 ttaagcgcac gtcaggtttt aagaaaatca atgttgtaac ccctatgaga ggcggtttca
2521 gaatttaaag gagagcgccg aaaggcgctt tttttatgcc ttgttatcat cctattacta
2581 tgtatcgtgt taagtctggt cgtaatcccg agactggcgc atggtcatta acaactaagt
2641 tgcaagatgc ttatagagat atgcctgtca agataccctg tggtcagtgt attggatgcc
2701 gacttaatta cgccaaattt tgggctgtgc gatgtatgca tgagctatat acatcgtcta
2761 atggttattt tttaactttg acttttgacg atgatcattt ggctcctgat ttgtctttgc
2821 acaaagagga ttttacgtta tttatcaaac gtttgcgcaa gaggtatggt aatggtatac
2881 gatattacca ctgcggtgag tacggagact tatctgctcg tccccatcat cacgctatca
2941 tctataatgt gcctattact gatttgtgtt tacttagtta ctctcacgga caaccctatt
3001 atactagtga tactatctct cgcctatggc cttacggcta tcatgttatt ggtaatgtta
3061 catttgagag ttgtgcatat gtagctcgtt actgtacaaa aaagattact ggtgatagag
3121 ctgcagctca ttataatggt cggttacctg agtatgttac tatgtctcgt cgtcctggca
3181 ttggctacga tttttaccaa aagtataaaa aagatatgta tgctatcgac aaagtaattt
3241 taggtggagg caaatcttgc aacatacctc ggtactatga caaattatgt gagcaagatc
3301 acactcttaa tattgagcaa atacgtgacc aacgtctcaa aaatttcgaa aaaaggtatg
3361 atttgagagg atttgtcgca tcagatattg caaagtataa attatgcgtg gacaatgttg
3421 ataaacagtt gcaagatatt ggcgctgttt tgcgacgtat cccctcggtg ttagagagcc
3481 gacaacggtt agatgtcgtc gaggagtgtc gcaaagaggc ttttaagcgt tatcaacgta
3541 ataaggtgta ataattatgt ctgattttaa atcaaaactc ggtgtaaatt atcgtatcga
3601 tgagattgct caagatgagc ctttgtcatc tcaatttagt tgctttttgc gcaaaggtgt
3661 atatggtctt tgggacaaga ctgcatgtat ttttagctcg cattttatct gtaataatga
3721 tattgcagct cagcgtagct ttgtagattg catgggtcaa gatactggtg ttattgctgg
3781 ttattttagg gattttgcac tttataagct tgccgagatt gacgagcgtg gcaaccttaa
3841 atcttttgac gatgagcaaa tgttattaga cggtactgtt gcttgggaga tgtatcaaga
3901 caaagagcaa tttaggcagc aatcacagga caaatttgct aaaaagctta aggtattgca
3961 tgacgatgac atacgtaagt ctaagcttaa tgctgccaaa gctaatccta atgctgcaaa
4021 tgcgtctggc gcagccagtt agcggagagg cgtagccttg gagcgtagtc ttttgacaag
4081 agcccgatag ggcaatgccc tatcccctgt aaagccaaaa aggtattgtt atggatagta
4141 tttttgatga tatgagcact gatgcaacga tatatagtcg ttataataga cctgttgtgt
4201 ctggtgttaa gtttgataag ccatcgatta ctcagcagca ttttaaagag caatgcgata
4261 ttaatcgtat tttggatgct tatagagtaa aagctcgtgc tatgggtgta tctgtagttg
4321 agttaatgcc taagcttggt agtgagcagt ttgctgatgt atctaatgtt gatgattatt
4381 taactgcaca gaatcgtatt gcgcaggtta atcagatgtt cgaggcatta cctgctgagg
4441 tacgtcgtag ttatgatgat gatcctgcaa attttgttgc tgcattagcc gatagccaaa
4501 actatcgcaa atttgctgat ttagggatta tggatataaa tgaggttata gagtatgagg
4561 atgttatcgc taaacagagt ggagtggttg cgggtgataa tcagcacgct aaaagcgata
4621 ctgtcgtatc tgctaccgag caaaaaggac cggtaaatca ggcggcacag tgatctactt
4681 gatgtaactg tgccgactga caccaaattt tcgaatttaa agatttttgg agaaaattta
4741 taa
//
