LOCUS AB027021 7871 bp DNA circular VRL 26-JUL-2016
DEFINITION Human papillomavirus type 82 DNA, complete genome.
ACCESSION AB027021
VERSION AB027021.1
KEYWORDS .
SOURCE human papillomavirus 82
ORGANISM human papillomavirus 82
Viruses; Monodnaviria; Shotokuvirae; Cossaviricota;
Papovaviricetes; Zurhausenvirales; Papillomaviridae;
Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 5.
REFERENCE 1
AUTHORS Kino,N., Sata,T., Sato,Y., Sugase,M. and Matsukura,T.
TITLE Molecular cloning and nucleotide sequence analysis of a novel human
papillomavirus (Type 82) associated with vaginal intraepithelial
neoplasia
JOURNAL Clin. Diagn. Lab. Immunol. 7 (1), 91-95 (2000)
PUBMED 10618284
REFERENCE 2 (bases 1 to 7871)
AUTHORS Sata,T. and Matsukura,T.
TITLE Direct Submission
JOURNAL Submitted (08-MAY-1999) Tetsutaro Sata, National Institute of
Infectious Diseases, Department of Pathology; 1-23-1 Toyama,
Shinjuku-ku, Tokyo 162-8640, Japan (E-mail:tsata@nih.go.jp,
URL:www.nih.go.jp, Tel:81-3-5285-1111(ex.2627), Fax:81-3-5285-1189)
FEATURES Location/Qualifiers
source 1..7871
/organism="human papillomavirus 82"
/mol_type="genomic DNA"
/sub_species="type 82"
/db_xref="taxon:129724"
gene 102..557
/gene="E6"
CDS 102..557
/gene="E6"
/codon_start=1
/protein_id="BAA90735.1"
/translation="MFEDIRERPRTLHELCEACNTSMHNIQVLCVYCKKELCRADVYN
VAFTELRIVYRDNTPYAACKKCLMFYSRIREYRRYSRSVYGATLEAITNKSLYELLIR
CHRCQRPLGPEEKQKVVDDKKRFHEIAGRWTGQCANCRKPPRQRSETQV"
gene 565..867
/gene="E7"
CDS 565..867
/gene="E7"
/codon_start=1
/protein_id="BAA90736.1"
/translation="MRGNVPQLKDIVLELTPQPEIDLQCYEQFDSSDEEDEVDNMRDQ
PARQAGQDTCYRIKVHCCRCSSVVQLAVESSGDSLRIFQQMLLGDLSLVCPWCATN"
gene 876..2804
/gene="E1"
CDS 876..2804
/gene="E1"
/codon_start=1
/protein_id="BAA90737.1"
/translation="MDSEGTEDEGAGCTGWFYVEAVVDKKTGDNISDDEEEDTNDTGS
DIIDFIDTSNSICSQAERETAQALLQVQETQAHKEAVQHLKRKFLGSPRSSPLKDITN
QNTQSNSQQQPKQANLQHGKRRLLDSYPDSGYGNTQVETVEGPLQVDGQNDGSQHSMC
SGGGSSDRSTEIDLETNENATNVGLNSICAVLKCSNAKAMFMAKFKELYGVSYNELVR
VFKSDKTCCTDWVCALFGVSPMVAENLKTLIQPFCMYYHIQCLSCDWGTIVLLLARFT
CAKNRLTIAKCLGTLVNIPQSQMFIEPPKLRSTAVALYFYRTGISNISSTYGETPEWI
TRQTQLQHSFDDSTFELSQMVQWAFDHDVVDDSEIAFYYAQLADTDSNAAAFLKSNCQ
AKYVKDCGTMTRHYKRAQRKSLTMSAWIRYRCDKVQDGGNWREIAKFLRYQGINFMYF
IQTFKLFLKGTPKHNCIVIQGPPNTGKSQFAMSLIRFLQGCVISYVNSGSHFWLQPLE
DAKVALLDDATYGCWTYIDQYLRNFLNGNPCSIDRKHRSLLQIVCPPLLITSNINPKE
DPNLMYLHSRVTVFQFLNAFPFDPHGNPVYALNDVNWKNFFSTTWSRLDLEEEEDKEN
GDPMSSFKCVPGENTRLL"
gene 2746..3825
/gene="E2"
CDS 2746..3825
/gene="E2"
/codon_start=1
/protein_id="BAA90738.1"
/translation="METLCHRLNVCQEKILDCYELDSDKLVDQINYWTLVRYECAMFY
TARERNMQTLNHQVVPASAVSKQKACQAIEMHMALESLNKSEYNMEPWTMRDTCYELW
GEAPKHCFKKGGKTVTVMFDGNKDNTMDYTCWTYVYIYKEDRWVKTQGNVDYTGIYYK
PDVNKEYYVTFKDEAKKYGAQQWEVYMCGNVITCPEYVSSTYSTPSPSTTTVEQLSNT
PTTNTYSASAGTTEAQTPQQRKRQRLAEPDSSTVTPLSVDTCDHQIHCGTAGPNTGGH
LSATKTAFIVHLKGATNCLKCLRYRFAKHRNLFKEVSSTWHWTSNTKAGIVTITFDSA
HQRQKFIDTVKVPSSVTVSLGIMTV"
gene 3335..3601
/gene="E4"
CDS 3335..3601
/gene="E4"
/codon_start=1
/protein_id="BAA90739.1"
/translation="MYLVPTAPRHPLLQLLNSYRTPPRPIPIPPPRAPQKPRHHNNEN
DSDLLSPTPPQSPRCPWTPATTKYTVELQAQTPEGTSVQLKLRL"
gene <3885..4139
/gene="E5"
CDS <3885..4139
/gene="E5"
/note="start codon is not identified"
/codon_start=1
/protein_id="BAA90740.1"
/translation="LLATIAVFLVCLFVLCVCVCLVLCCLLPLLQSQYVFAAALLLII
CFWFVVATSPLTTFTVYLICFYIPCFLLHLYTFSILQLTQ"
gene 4168..5547
/gene="L2"
CDS 4168..5547
/gene="L2"
/codon_start=1
/protein_id="BAA90741.1"
/translation="MVAARARRRKRASVTQLYSTCKAAGTCPPDVIPKVKGTTLADKI
LQWSGLGIFLGGLGIGTGSGTGGRTGYIPLGGGGRPGVVDIAPARPPIIIEPVAPTEP
SIVNLVEDSSIINSGSTIPTFTGTDGFEITSSSTTTPAVLDITPSAGTVHVTSTNIEN
PLYIEPPFIEAPQSGEVSGHIFTSTPTSGTHGYEEIPMEVFASNVTTGKEPISSTPTP
GVRRIAAPRLYSRAFSQVKVTNPDFISKPSTFVTFDNPAFEPADTSLSFEEPTDVAPD
PDFLDIIKLHRPALTSRRGTVRFSRLGQKATIRTRSGKQIGARGHYYHDISSIAPAEE
LEMQPLLSPSTNNYSYDIYADLNEAETGFMQPTQTTPMLRSPFSPLSTQLPSLSSSVS
SSYANVTIPFSTTYNVPIHTGPDVVLPTSPTVWPFIPHTSIDTQHAIVIQGGDYYFVA
VYIFVTQTP"
gene 5571..7082
/gene="L1"
CDS 5571..7082
/gene="L1"
/codon_start=1
/protein_id="BAA90742.1"
/translation="MALWRTNDSKVYLPPAPVSRIVNTEEYITRTGIYYYAGSSRLIT
LGHPYFSIPKTNTRAEIPKVSAFQYRVFRVQLPDPNKFGLPDPNLFNPDTDRLVWGCV
GVEVGRGQPLGVGLSGHPLFNKYDDTENSRFANGNDQQDVRDNISVDNKQTQLCIIGC
APPIGEHWATGTTCKNVPVPQGDCPPLELVSTVIEDGDMVDTGFGAMDFANLQATKSD
VPLDIAQSVCKYPDYLKMSADTYGNSMFFHLRREQIFARHYYNKAGVVGDAIPDKAYI
KGTGAGRDPISSYIYSATPSGSMITSDSQIFNKPYWLHRAQGHNNGICWNNQLFITCV
DTTKSTNLTISTAVTPSVAQTFTPANFKQYIRHGEEYELQFIFQLCKITLTTEIMAYL
HTMDSTILEQWNFGLTLPPSASLEDAYRFVKNAATSCHKDSPPQAKEDPLAKYKFWNV
DLKERFSLDLDQFALGRKFLLQIGAQRKPRPGLKRPAPSSSASSSAKRKRVKK"
ORIGIN
1 atactttaca attatcttgt aaaaagtagg gtgtaaccga aaagggttat gaccgaaaac
61 ggtgcatata aaagcaagca cgaaaaatac ataagaacac catgtttgaa gacataagag
121 aaagaccacg aacgctgcac gaattatgtg aagcctgcaa tacgtctatg cacaatattc
181 aggtattgtg tgtatattgt aaaaaggagt tgtgtagagc agatgtgtat aatgtagcat
241 ttacagaact taggattgta tatagggaca atacgccata tgcagcatgc aaaaaatgcc
301 taatgtttta ttctagaatt agagaataca gaaggtatag taggtctgtg tatggtgcta
361 cattagaggc cattactaac aaaagtttat atgaattatt aataaggtgt catagatgtc
421 agagaccact tgggcctgaa gaaaagcaaa aggtggtgga cgacaaaaaa aggtttcatg
481 aaatagcggg acgctggacg ggacagtgtg caaattgcag aaaaccacca agacaacgta
541 gtgaaaccca ggtgtaataa cgccatgcgt ggtaatgtac cacaattaaa ggacatagtg
601 ttggagttaa caccacaacc tgaaattgac ttgcaatgct acgagcaatt tgacagctca
661 gacgaggagg atgaagtaga taatatgcgt gaccagccag ccagacaagc tggacaggat
721 acgtgttaca gaattaaagt gcactgttgc aggtgttcga gtgttgtaca gctcgcagtg
781 gaaagcagtg gagacagcct tcgcatattt cagcaaatgt tactgggcga cctaagcctg
841 gtgtgcccgt ggtgtgcgac caactaacat cggcaatgga cagtgaaggt acagaggatg
901 agggggcggg gtgtaccggg tggttttatg tggaggcagt agttgacaaa aaaacgggag
961 ataatatatc agacgatgag gaggaagata caaatgatac agggtctgat ataatagatt
1021 ttatagatac aagtaatagt atttgtagtc aggcggaacg ggagacagca caggcgttgt
1081 tgcaggtcca agaaacacag gcacacaaag aggctgtgca gcatctaaaa cgaaagtttc
1141 taggcagtcc gcggagcagc ccattaaaag acattacaaa tcaaaacaca caaagcaata
1201 gtcagcaaca accaaaacag gcaaaccttc aacacggtaa aaggagatta ctggacagtt
1261 atccggacag tggatatggc aatacacaag tggagactgt ggaaggaccc ttacaggtag
1321 atgggcaaaa tgacgggtca caacatagta tgtgtagtgg cggggggagc agcgacagaa
1381 gtacagagat agacctggaa acaaacgaaa atgctaccaa tgtaggacta aacagtatat
1441 gtgcagtgtt aaaatgtagc aatgcaaaag caatgtttat ggcaaaattt aaagaactgt
1501 atggtgttag ttataatgag ttggtaaggg tatttaaaag tgataaaaca tgctgcacgg
1561 actgggtatg tgccttattt ggggtatcgc caatggtggc agaaaattta aaaaccctaa
1621 ttcagccatt ttgtatgtac taccatatac aatgcctatc atgtgattgg ggtactattg
1681 tgctactgtt agctagattt acatgtgcca aaaacagact taccattgcc aaatgtttag
1741 gtacattagt aaatattcca caatcacaaa tgtttataga accacctaag ctacgtagta
1801 cagccgttgc attgtacttt tatagaacag gaatatcaaa cattagtagc acatatggcg
1861 aaacaccaga atggattaca agacaaacac aactacagca cagttttgat gatagcacgt
1921 ttgaactatc gcaaatggta caatgggcat ttgaccatga tgtagtagac gatagtgaaa
1981 tagcatttta ctatgcacaa ttggctgata cagatagcaa tgcagcagcg tttctaaaaa
2041 gtaattgcca agcaaagtat gtaaaagact gtgggactat gacacggcac tacaaacgag
2101 cacaaagaaa atcactaaca atgtcagcat ggattaggta tagatgtgac aaagtgcaag
2161 acgggggtaa ctggagggaa atagctaaat ttttgcgata ccagggtatt aactttatgt
2221 attttataca aacatttaaa ttgtttttaa aaggaacacc aaaacacaac tgcatagtaa
2281 tacagggccc accaaacaca gggaaatcac aatttgcaat gagtttaatt agatttttgc
2341 aagggtgcgt tatttcatat gtaaattcag gtagtcattt ttggttacag ccactagagg
2401 atgccaaggt agcattatta gatgatgcca catatggctg ttggacatat atagaccagt
2461 acctaagaaa tttcctaaat ggtaatccat gtagtattga taggaaacac agaagcctgc
2521 tgcaaattgt atgcccacca ttgcttatta cctcaaatat caatccaaaa gaagatccaa
2581 atttaatgta tttacatagt agagtgacag tatttcaatt tttaaatgca tttccatttg
2641 acccccatgg gaatcctgta tatgcactaa atgatgtaaa ctggaaaaat tttttttcca
2701 ccacctggtc cagattagat ttggaggagg aagaggacaa agaaaatgga gaccctatgt
2761 catcgtttaa atgtgtgcca ggagaaaata ctagactgtt atgaactgga cagtgataaa
2821 ttagtagatc aaattaatta ttggacgttg gtacgatatg aatgtgctat gttttatact
2881 gcacgagaaa gaaacatgca aacccttaac catcaagtag taccagcatc ggcagtatca
2941 aaacaaaagg cctgccaagc cattgaaatg catatggcat tagaatcgct aaacaaatct
3001 gaatataata tggaaccatg gacaatgcgg gacacatgct atgaactatg gggcgaggcc
3061 cctaaacatt gtttcaaaaa agggggaaaa actgtaacag tgatgtttga tgggaataag
3121 gacaatacaa tggactatac atgttggaca tatgtgtata tatataaaga ggatagatgg
3181 gtaaaaacac agggaaacgt ggactataca ggtatttatt acaaaccaga tgtaaacaaa
3241 gaatattatg taacatttaa agatgaagca aaaaaatatg gggcacaaca atgggaggta
3301 tatatgtgtg gcaatgtaat aacatgtcct gaatatgtat ctagtaccta cagcaccccg
3361 tcaccctcta ctacaactgt tgaacagcta tcgaacaccc ccacgaccaa tacctattcc
3421 gcctccgcgg gcaccacaga agcccagaca ccacaacaac gaaaacgaca gcgacttgct
3481 gagcccgact cctccacagt caccccgctg tccgtggaca cctgcgacca ccaaatacac
3541 tgtggaactg caggcccaaa caccggaggg cacctcagtg caactaaaac tgcgtttata
3601 gttcatttaa aaggtgcaac aaattgttta aaatgtttaa gatacagatt tgcaaaacat
3661 agaaatttgt ttaaagaagt gtcatctacc tggcattgga ccagtaatac aaaagcaggc
3721 attgttacaa ttacatttga cagtgcacac caacgtcaaa agtttattga tactgttaaa
3781 gtaccatcaa gtgtgacagt gtcattgggt attatgacag tgtaaatata tgtattgtac
3841 atatataggt ttacaagcca atatgtgctg ctaagtgtat atagttactc gcaaccattg
3901 cggtgttttt ggtgtgttta tttgtgcttt gcgtgtgtgt gtgtcttgtg ttgtgttgtt
3961 tgttgccgct attgcaatcc caatatgtgt ttgcagcagc cttattacta attatatgtt
4021 tttggtttgt ggttgccaca tcacctttaa ctacatttac tgtatacttg atttgttttt
4081 atattccatg ctttttatta catttatata ccttttctat tttgcaactt acacaataaa
4141 actttgtatg tttttgtatt atatacaatg gtggctgcac gtgcacggcg gcgtaagcga
4201 gcatctgtaa cacaattata ttccacatgc aaagctgctg gtacatgtcc tcctgatgtt
4261 attcctaagg taaagggcac tacattagct gataaaatat tacaatggag tggtttgggt
4321 atatttttgg ggggtttggg tattggcacc gggtctggca ctgggggcag aactgggtac
4381 attcctttag gtggtggtgg acggcctggt gttgtagata ttgctccggc caggcctcca
4441 attattattg aacctgtagc ccctactgaa ccttctattg ttaaccttgt tgaggattct
4501 agtattatta attcaggctc tactatacct acctttactg gtactgatgg ctttgaaatt
4561 acttcctctt ctacaacaac tcctgcggtt ttagacatta caccttccgc tggtacagta
4621 catgttacaa gcactaacat tgaaaatccc ttatatattg aacctccatt tattgaggca
4681 ccacaatcag gtgaggtatc tggacatata tttaccagta cccctacgtc tggcacccat
4741 ggatatgagg aaatacctat ggaggtattt gcctccaatg ttactactgg taaggaaccc
4801 attagcagta cacccacccc tggggtgcgc cgcattgctg cacctcgttt atatagcagg
4861 gcattttcac aggttaaggt tactaatcca gactttatta gtaagccctc tacatttgtt
4921 acttttgata atcctgcttt tgaacctgct gatacatcat tgtcctttga ggaacctact
4981 gatgttgcac cagatcctga ttttttagat attattaaac tgcaccgccc tgcgctgaca
5041 tctcgcagag gtacagtgcg gtttagtaga ttgggtcaaa aggccaccat acgcacacgt
5101 agtggcaaac aaataggtgc tcgtggacat tattatcatg atataagtag tattgcacct
5161 gctgaggaac ttgaaatgca gcctttactt tccccttcta ctaataatta tagttatgac
5221 atttatgctg atttaaatga agctgaaaca ggttttatgc agcctacaca aaccacacct
5281 atgcttcgct ctccattttc tcctttgtct acacaactac cttcattgtc ttcctctgtt
5341 tcttcatctt atgctaatgt tactatccct ttttctacca catataatgt tcctattcat
5401 acgggtcctg atgttgtgtt acctacttca cccactgtgt ggccctttat tccacacaca
5461 tctattgaca cacaacatgc tattgttata caaggtgggg attactactt tgtggccgta
5521 tacatatttg ttacgcaaac gccgtaaacg tataccctat ttttttgcag atggctttgt
5581 ggcgtactaa tgacagcaaa gtgtatttac cacctgcacc agtgtcacgc attgtcaaca
5641 cagaagaata tataacccgc accggcatat attattatgc aggcagttcc agacttatta
5701 ccttaggaca tccatatttt tcaataccca aaaccaatac acgtgctgaa atacctaagg
5761 tatctgcctt tcagtatagg gtgtttaggg tacagttacc tgaccccaac aaatttggtc
5821 ttcctgatcc taatttgttt aatccagaca cagatcgttt ggtgtgggga tgtgttggtg
5881 ttgaagtagg taggggtcag ccgttaggtg ttggccttag tggtcatcct ttatttaata
5941 agtatgatga tactgaaaac tctaggtttg ccaatggcaa cgaccaacag gatgttaggg
6001 acaacatatc tgtggacaac aaacaaactc agttatgcat tataggctgc gctcctccta
6061 ttggggaaca ctgggccaca ggtaccacat gtaaaaacgt acctgtacct cagggtgact
6121 gtccaccttt ggaacttgtg tctactgtca ttgaggatgg cgatatggtg gacactggtt
6181 ttggggccat ggattttgct aatttacaag ctactaaatc agatgttcca ttggatattg
6241 ctcagtctgt gtgtaaatac cctgattact taaaaatgtc agcagataca tatggcaatt
6301 ctatgttttt tcatttacgc agggagcaaa tatttgctag gcattactat aataaggctg
6361 gtgtggttgg tgatgccatt ccagacaagg cttatattaa gggtactggt gctggccgcg
6421 accctattag tagttatatt tattcagcta ctcccagtgg ttctatgata acctctgatt
6481 ctcagatttt taataagcct tattggttgc atcgcgccca gggccacaat aatggcattt
6541 gctggaataa tcagcttttt attacttgtg ttgacactac taaaagtacc aatttaacca
6601 ttagcactgc tgttactcca tctgttgcac aaacatttac tccagcaaac tttaagcagt
6661 acattaggca tggggaagaa tatgaattgc aatttatatt tcaattgtgt aaaatcactt
6721 taactactga aattatggct tacctgcaca ccatggattc tacaatttta gaacagtgga
6781 attttggatt aacattgccc ccctccgcta gtttggagga tgcctatcga tttgtaaaaa
6841 atgcagcaac atcctgtcac aaggacagtc ctccacaggc taaagaagac cctttggcaa
6901 aatataaatt ttggaatgta gaccttaagg aacgcttttc tttggatttg gatcagtttg
6961 cattgggtcg caagttttta ttacaaatcg gtgcccaacg caaacccaga ccaggcctta
7021 aaaggcctgc cccatcctct tccgcttcct cgtctgccaa acgtaaaagg gttaaaaaat
7081 aggttcgccc tgcctatgta tgtgtttgtg tgtgtgtgtg tgtgtgtgtg tgtgcgtgtt
7141 gtgtgtattt gtgtgtgtat gtttatgtat atttttctgt atgttttgct gtatggtttc
7201 tgtgtggttt actaataaag tatgtatgtg tgtgtgtttt tgcaatgtgt tgtgtttttg
7261 catgactgca tatgtatgac ataaaaaagt gtttgtaata attacattat ccctgtaggt
7321 taagggtggt gtttaggtgg cgtccctatt gccctaccca tatttgtggc ttgcagcaca
7381 cttgtatata tatgttcttg ctgtattgca tgtaccacag gattccattt tgttttttcc
7441 tgcagccatt ttgtggcgac cgatttcggt tgcttaaaaa tgactacatt tgccaacttt
7501 tgaaccacac tacctatgtt ttttggcata acccttaatt cttttggcat ggtatgtaca
7561 tcccgcccgc ccacgccttg ttcctggcgc gccttcctgg cgcatgtcat acacaccaca
7621 ttactcattt gtacttaaac aattgttggc acaatatttt tccgccctgt aataatttat
7681 atgcttatag gcatgtattt tttggcttat tttgccttta ttaattgcat acttggcagg
7741 tcatgaacta aatgtctctg ccaagtttct atcctaccta taaaatgtat tactcatctg
7801 caggtgtgct acacaactgt gttacccaac cgatttgtgt tttgcctatg cttgcaacat
7861 tttttcttat a
//
