LOCUS AF293960 7948 bp DNA linear VRL 18-FEB-2001
DEFINITION Human papillomavirus type 84, complete genome.
ACCESSION AF293960
VERSION AF293960.1
KEYWORDS .
SOURCE human papillomavirus 84
ORGANISM human papillomavirus 84
Viruses; Monodnaviria; Shotokuvirae; Cossaviricota;
Papovaviricetes; Zurhausenvirales; Papillomaviridae;
Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 3.
REFERENCE 1 (bases 1 to 7948)
AUTHORS Terai,M. and Burk,R.D.
TITLE Complete nucleotide sequence and analysis of a novel human
papillomavirus (HPV 84) genome cloned by an overlapping PCR method
JOURNAL Virology 279 (1), 109-115 (2001)
PUBMED 11145894
REFERENCE 2 (bases 1 to 7948)
AUTHORS Burk,R.D. and Terai,M.
TITLE Direct Submission
JOURNAL Submitted (07-AUG-2000) Microbiology & Immunology, Albert Einstein
College of Medicine, 1300 Morris Park Avenue, Bronx, NY 10461, USA
FEATURES Location/Qualifiers
source 1..7948
/organism="human papillomavirus 84"
/mol_type="genomic DNA"
/db_xref="taxon:150546"
gene 1..447
/gene="E6"
CDS 1..447
/gene="E6"
/codon_start=1
/product="putative transforming protein E6"
/protein_id="AAK09271.1"
/translation="MPNGRYHPTNIFVLCQEYEVEFDDLRLICIFCKEELTEGEVLAF
AVKELLIVWRYNFPHGVCMKCLCREAKVRELRHWDYSSFGPTVEEETGLPLAQINIRC
HACCKPLCYQEKEYMVELQLLFHKIAGQWTGKCCNCRVTCAARRQR"
gene 423..713
/gene="E7"
CDS 423..713
/gene="E7"
/codon_start=1
/product="putative transforming protein E7"
/protein_id="AAK09272.1"
/translation="MRGQTPTLKDIILTDIPDVVSLYCDEQLLDSSEEEDNGDCLRDQ
PAKPAQLAYRVVTECGLCSRPVRLAVLCGVEDLRKLQQLIVEAVAIVCPGCA"
gene 715..2667
/gene="E1"
CDS 715..2667
/gene="E1"
/codon_start=1
/product="putative replication protein E1"
/protein_id="AAK09273.1"
/translation="MAESPEGTDGGTGGGAGGWFVVEAMVHQANTDVSSDEDETRIDT
GEDLVDFIDDTRHPGDGQEVPLDLYVQQTIQDDAATVQALKRKFMGSPATSSCASWVD
NELSPRLNAICLQKRHDKARRRLFDQDSGYGNTQVDIGTSESQVPGGTTNSGGGDVTQ
DVVEEERRGGDGETQPHANTQHTQQTEGTPDALDLLQVSNLRVKLLGKFKELFGLSFM
DLVRQFKSNKSTCGDWVVGAFGVYHAVAEAAKTLLQPVCEYAHIQTLTSEWGMVMLLL
LRFKCNKSRETVAHCIGGILNVPEKRMLIEPPKQRSGPCALYWYRTAMGNACEVLGET
PDWIVRQTVIGHAMGETQFSLSKLVQWAYDNDITDESELAYEYAQLGTEEPNAAAFLA
SNCQARYIKDAMIMCRHYRRAEQTRMSMSQWITYRGRKVADTGDWRHIVKLLRYQGIE
FISFMTALKQFLKGTPKKGCLVFYGPSDTGKSLFCMSLINYLGGTVISFVNSTSHFWL
SPLADAKIGLLDDATYQCWIYMDTYLRSVLDGNVISVDRKHKNLVQLKCPPLLITTNI
NPETDDTFKYLRSRMVIFPFLNKCPLDANGDPVYQLNNENWKSFFRRSWARLDLTQEE
EEEEESQNGNPSRPFRCVPGEANRPL"
gene 2609..3742
/gene="E2"
CDS 2609..3742
/gene="E2"
/codon_start=1
/product="putative regulatory protein E2"
/protein_id="AAK09274.1"
/translation="METLADRLDACQEKLIDLYEKDSNKLEDQLMHWYYTRLEQAMLF
KAREAGLRHIGHQVVPTLSVTKEKARQAIMVHLSLQSLNNSAFKHEPWTLQDTSLNMW
TVAPKGCWKKHGQPIRVKYDGEDDKEMEYVNWGFIYVHCASEDTWYKVPGQISNRGLY
YELQGCKHYYVEFAKEAKQYGVKNIWEVYMGGKIIYHACDSVSSTQDAVPEVPTAETA
AQLHHTTTAPTPTTQRCTKTAPQVQAPPAKRQRLGGDTVQQPDSTQGHRPVDSCSTRT
NNNCDSPKRPREHSNCDSAPVLHLKGQSNSLKCFRYRLHQSVPDLFERASSTWKWTCG
GEGDKTSYVTLWYKSTDQRKQLLARVHIPKGIVATLGSMSMVM"
gene 3198..3509
/gene="E4"
CDS 3198..3509
/gene="E4"
/codon_start=1
/product="putative E4 protein"
/protein_id="AAK09275.1"
/translation="MHATLYPAPRTPCQKYPLLKLLHSCTTPPPRPPPPPSAAPRLPP
RCRRRLLSDSDSEGTQFSSPTLHKDTGRLTVAAQGQTITVTAQNGHGNTVTVTVHLSY
T"
gene 4263..5687
/gene="L2"
CDS 4263..5687
/gene="L2"
/codon_start=1
/product="putative minor capsid protein L2"
/protein_id="AAK09276.1"
/translation="MPKVLKRRKRASATDLYRTCKATGTRPADVIPKVEGDTWADRFL
KWASLGVFFGGLGIGTSSGTGGRTGYIPLGTRPPTVVDVGPTARPPVVIEPVGAADPS
IVTLVEDSSVINAGAPFPNFTGTGGFEVTTSSITTPAVLDITPSGSSVQVSSTSYVNP
LFTEPSIIEPPQAGDITGHVLSSTATSGSHTYEEIPMQTFAVQGGTGLEPISSTPTPG
VRRLAGPRLNLYSRATQQVPVADTAFLSRPESFVTFDNPVFDPEETIIFEHPSLHAPP
DPDFLDIVTLHRPALTARRSGVRFSRIGQRASMRTRSGKHIGARVHFYHDLSPIPHLE
DIELQPLVSSSAVPTDSLYDIYADDAHLSSVLRPPSVSALRPASPFASADLSATSITA
STYDNVTVPLFSGTDVPVYTGPDIDHSAAPSAPPFVPVIPSTTPYAIYILGSDYYLLP
NYIFFPKKRKRVPYSFSDGFVAAW"
gene 5665..7176
/gene="L1"
CDS 5665..7176
/gene="L1"
/codon_start=1
/product="putative major capsid protein L1"
/protein_id="AAK09277.1"
/translation="MALWRPGDGKVYLPPTPVSKVISTDRYVSRTNLFYYGGSSRLLT
VGHPYYSVPVSTPGQNNKKATIPKVSGYQYRVFRVHLPDPNKFGLPDAQLYNPDTERL
VWACRGVEVGRGQPLGVGTSGHPLYNRLDDTENTPFLAAGDTDSRDNVSVDYKQTQLL
IIGCKPSIGEHWGKGTVCTNVQYRAGDCPPLQFTNSTIEDGDMVEAGYGAIDFATLQE
SKSEVPLDLCTTTCKYPDYLQMAAEPYGDCMFFCLRREQMFARHFFNRQGTMGEEVPQ
SFYLKGTSSRATLSSSVYAPTPSGSMVSSDSQLFNKPYWLQKAQGHNNGICWFNQLFV
TVVDTTRSTNFTISAATNTESEYKPTNFKEYLRHVEEYDLQFIFQLCKVRLTPEVMSY
LHTMNDSLLDEWNFGVVPPPSTSLDDTYRYLQSRAITCQKGAAAAKPKDDPYAGMSFW
DVDLKDKFSTDLDQYPLGRKFLLQSAPRSTLVSRKRTASASTPPASKRRKAKK"
ORIGIN
1 atgcccaacg gacgctacca ccccaccaat atttttgtgc tgtgccagga atacgaggtg
61 gagttcgacg acctacgatt aatttgcatc ttttgcaagg aagaattaac ggaaggcgaa
121 gtgctggcct ttgcagtaaa ggaattacta attgtttgga ggtataattt ccctcatggg
181 gtgtgcatga aatgcttatg cagggaagcc aaagtacgtg agctacgcca ctgggattac
241 tccagctttg gaccaacagt ggaagaagaa acaggattac cacttgcaca aataaatata
301 aggtgccacg cgtgctgcaa gccattgtgc tatcaggaaa aggagtatat ggtggaattg
361 cagttgctat tccacaaaat agctggacag tggacaggga agtgctgcaa ctgtagggta
421 acatgcgcgg ccagacgcca acgttaaagg atattatttt aacagatata ccagatgtag
481 ttagtttata ctgtgacgag caattgttag acagctcaga ggaggaggat aatggggatt
541 gcttgcgtga ccaacctgca aaaccagcac agctggccta tagggtggta acagagtgtg
601 ggttgtgtag ccgtccagtt aggctggcgg tgctttgtgg agtggaagac ctcagaaagc
661 tgcagcagct tatagtggaa gcagtggcca tagtgtgtcc cggctgtgca taatatggca
721 gagtcacctg aaggtaccga tggggggact ggcggggggg ctgggggatg gtttgtggtg
781 gaagccatgg tacaccaggc aaacaccgat gtgtctagcg atgaggacga aacacgtata
841 gatacaggag aagatttggt agactttata gatgatacca gacatccagg ggatggacag
901 gaagtgccgt tagatttgta tgttcaacaa acaatacagg atgacgctgc aacggtgcaa
961 gccctaaaac gaaagtttat gggaagccca gcaaccagtt cctgcgcatc ctgggtggat
1021 aatgaactaa gtccacggtt gaatgcaata tgtttgcaga aaaggcacga caaggccagg
1081 agaaggttgt ttgaccagga cagtgggtat ggcaatacgc aggtggatat cggaacatcc
1141 gagagtcagg taccaggggg aaccactaac agcggggggg gagacgtaac acaggacgtt
1201 gtagaggagg aacgcagggg gggggatggg gaaacacagc cacatgcaaa cacgcagcac
1261 acacagcaga cggaaggcac accagacgca ttagacctgc tgcaggttag taacctaagg
1321 gtaaaactat taggaaaatt taaggaacta tttgggctgt cctttatgga tctggtaaga
1381 caatttaaaa gtaataagtc aacatgtgga gactgggtgg tgggggcatt cggggtgtac
1441 catgcagtgg cagaagcagc aaaaacactg ctacagcctg tgtgtgagta tgcacatatc
1501 caaacattaa ctagtgaatg gggaatggta atgctgctgc tactgcgctt taagtgtaac
1561 aaaagcaggg aaacagtagc gcactgtata ggtggcattt taaatgtacc cgaaaaacgt
1621 atgctaatag agcccccaaa gcaacgcagc gggccatgtg cactatattg gtatagaaca
1681 gcaatgggca atgcatgtga agtgttaggg gaaacaccag actggatagt acgacaaact
1741 gtaattgggc atgcaatggg ggaaacgcag tttagtttat caaaactagt gcagtgggca
1801 tatgacaatg acattacaga tgaaagtgaa ctggcctatg aatatgcaca attgggaaca
1861 gaggagccaa atgcagccgc cttcttagca agcaattgtc aggcacgata tataaaggat
1921 gcaatgataa tgtgcagaca ttatagacgt gcagaacaga cacgtatgag tatgtcacaa
1981 tggataacat atagggggcg caaggtagct gatacaggcg attggaggca tatagtaaaa
2041 ctattaagat atcaaggaat agaatttatt agctttatga cagcattaaa gcaattccta
2101 aagggcacac caaaaaaagg ctgtttggta ttttatggac ccagcgatac aggcaaatcg
2161 ctgttttgca tgagtttaat aaactattta ggtggaacag ttatatcctt tgtaaattct
2221 actagtcatt tttggctgtc gccactggca gatgctaaaa taggattgct agacgacgcc
2281 acatatcaat gctggatata tatggataca tatttaagaa gtgtgctaga tggcaatgta
2341 ataagcgtag acagaaaaca taaaaaccta gtacagttaa aatgtcctcc gttactaata
2401 acaacaaaca taaatccaga aactgatgac acatttaaat acttacgcag ccgaatggtt
2461 atttttccct ttttaaacaa gtgcccactg gatgccaatg gagacccagt gtatcaatta
2521 aataatgaaa attggaaatc cttttttcga aggtcgtggg cacgcttaga cttaacccag
2581 gaggaggagg aggaggagga gtcccaaaat ggaaacccta gccgaccgtt tagatgcgtg
2641 ccaggagaag ctaatagacc tttatgaaaa agatagcaac aagcttgagg accagttaat
2701 gcattggtac tacacgcgcc tggaacaagc tatgctgttt aaggcaagag aagcaggact
2761 aagacacata ggccaccagg tggtgcccac acttagtgtg acaaaagaaa aagctcggca
2821 ggccataatg gtgcatttat ctttgcaaag cctaaataat agtgcattta agcacgagcc
2881 atggacattg caggacacat cattgaacat gtggacagta gccccaaaag ggtgttggaa
2941 gaaacatgga cagcccatca gagtaaaata tgatggagaa gatgataaag aaatggaata
3001 tgtaaactgg gggtttatat atgtacattg tgccagtgag gacacctggt ataaggtacc
3061 tggacagatt agcaacagag ggctgtatta tgaactgcaa ggctgcaaac attactatgt
3121 ggaatttgca aaggaggcaa aacagtatgg ggtaaaaaac atatgggagg tgtatatggg
3181 aggcaaaata atttaccatg catgcgactc tgtatccagc acccaggacg ccgtgccaga
3241 agtacccact gctgaaactg ctgcacagct gcaccacacc accaccgcgc ccacccccac
3301 cacccagcgc tgcaccaaga ctgcccccca ggtgcaggcg ccgcctgcta agcgacagcg
3361 actcggaggg gacacagttc agcagcccga ctctacacaa ggacaccggc cggttgacag
3421 ttgcagcaca aggacaaaca ataactgtga cagcccaaaa cggccacggg aacacagtaa
3481 ctgtgacagt gcacctgtcc tacacctaaa aggtcaatcc aatagcctta agtgctttcg
3541 atataggtta caccagtcgg tgcctgacct gtttgaaagg gcatcgtcca cgtggaagtg
3601 gacctgcggg ggggagggcg acaaaacatc atatgtaaca ctatggtata aaagtacgga
3661 ccaacgcaaa cagctcttgg cacgtgtaca tataccaaaa ggcattgtag ccacacttgg
3721 tagtatgtct atggttatgt aaacagtacc cattgtatat gtatagtgta aatgctgtat
3781 tactgagcca tttgtaacaa ttgtgtatgt cctacatacc tggcaaatag ggcacaaccc
3841 tggaacctat tgtgtgggca gtgcatgtat ggtgtaatgt gttgctgctg ctagttcttt
3901 tctggctttc ccacctatct gcttttgttg catttgttgt gtttgtgtgt gttttatatt
3961 ttgggttgtt gctgttatat ttgcaggtgc tgtggtacat tgaattgtta taaccacaca
4021 accagccaac gactgctgct acatatccct gtacagtccc ggtcctacct attatgtatc
4081 ccatgcaatt acggggtccc cagggtgggt atgacatagt ggtgtttgag cgtggtgatg
4141 taggtctttt tactattatt ttgcttttaa ttgttattat tttactttgg ctgtgccacc
4201 gtgttatgca gttttaaagt gcttttgtat ttttgtacat actataataa acacttggta
4261 ccatgcccaa ggttcttaaa cgtcgcaagc gtgcttctgc cacggacctt tatcgcacct
4321 gcaaggccac tggaacacgt cctgctgatg ttattcctaa ggtggaaggg gatacatggg
4381 cggatcgctt tttaaaatgg gccagcctgg gtgtgttttt tggtggtctg ggtattggca
4441 catcctctgg cacgggtggc cgtacgggct atatacccct tggtacccgg cctcctactg
4501 tggttgatgt aggccctacg gcccgtccgc ccgttgtcat tgaacccgtt ggcgctgcag
4561 acccttcaat tgttaccttg gtggaggatt ccagtgttat taatgccggg gccccttttc
4621 ctaactttac gggtactggt gggtttgagg tcaccacatc ctctattacc acacctgcgg
4681 ttttagacat caccccctcg gggtcgtctg tgcaggtcag tagtaccagt tatgttaacc
4741 cgctgtttac tgagccttct attattgagc ctccccaggc aggggacatt actggtcatg
4801 tgttgtctag tacagccacg tccgggtcac atacctacga agaaatcccc atgcaaacct
4861 ttgccgtgca ggggggtacg ggcctagaac ccataagtag tacacccaca cctggggtgc
4921 ggcgccttgc agggcctcgc ttaaatttat acagtcgtgc cactcaacag gttcctgtgg
4981 ctgacactgc attcttatca cgtcctgaat catttgttac ctttgacaac cctgtgtttg
5041 accccgagga aacaattata tttgaacatc ctagtttaca tgcgccaccc gatcctgact
5101 ttctggatat tgtcacttta cataggccgg cgttaactgc acgtaggtca ggtgtacggt
5161 tcagtcgcat aggccaaagg gcgtctatgc gcacacgcag tggtaaacat attggggccc
5221 gtgttcattt ttatcatgac cttagcccta taccacatct tgaggatatt gagctgcagc
5281 ccctggtatc atcctctgct gtgcctacgg attcattata tgatatatat gcagatgatg
5341 cccatttgtc ctctgtattg cgtccccctt ccgtttctgc cctacgtcca gcttccccct
5401 ttgcctctgc agacctttct gccacctcca taaccgcctc cacatatgat aatgtcactg
5461 tcccgttgtt ttctggcacc gatgtgcccg tctatacagg ccctgatatt gaccattctg
5521 ctgctccctc cgcacctccc tttgttcctg ttattcctag cacaacccca tatgctattt
5581 atatcctggg gtcagattat tatttgcttc ctaattatat attttttcct aaaaagcgta
5641 aacgtgtgcc ctattctttt tcagatggct ttgtggcggc ctggtgacgg caaggtatat
5701 ctgcccccca ctcccgtgtc taaggttatc agcacggatc gttatgtctc tcgcaccaac
5761 ttattttatt atggtggtag ttctcgcctg cttactgtgg gacatccata ttattctgtt
5821 cctgtgtcta cccctgggca aaacaacaaa aaggccacta tccccaaggt ttctgggtat
5881 caatacaggg tgtttagggt ccatttacct gaccccaata agtttggtct tccggatgca
5941 caattatata atcctgacac cgagcgcctt gtgtgggctt gtaggggtgt tgaggtaggc
6001 cgcgggcagc ctttaggcgt tggcactagt ggccaccctt tatacaatag gcttgatgac
6061 actgaaaaca ccccttttct tgctgctggg gacactgaca gtagggataa tgtttctgtg
6121 gattataaac aaacacagct gttaattata ggctgtaagc cgtctattgg ggaacattgg
6181 ggtaagggta ctgtatgtac taatgtgcaa tatcgtgcgg gtgattgccc ccctttgcag
6241 ttcactaatt ctaccattga ggatggtgat atggttgagg ctggctatgg tgctattgat
6301 tttgccacac tgcaggaaag taagtcagag gtgcctttgg atctctgcac cactacctgt
6361 aaatatcctg attatttaca aatggctgca gagccgtatg gcgattgtat gtttttttgt
6421 cttcggcggg agcaaatgtt tgctaggcat ttttttaaca ggcagggtac tatgggtgag
6481 gaggtgcctc agtcttttta ccttaagggg acctcctccc gggcaaccct tagcagttct
6541 gtgtatgccc ctacacccag tggctctatg gtgtcctcgg attcccaatt gtttaataag
6601 ccatactggt tgcaaaaggc ccagggtcat aacaatggta tatgctggtt taatcaattg
6661 tttgtcacgg tggtagatac cacccgcagc accaatttta ctattagtgc tgctaccaac
6721 accgaatcag aatataaacc taccaatttt aaggaatacc taagacatgt ggaggaatat
6781 gatttgcagt ttatattcca gttgtgtaag gtccgtctga ctccagaggt catgtcctat
6841 ttacatacta tgaatgactc cttattagat gagtggaatt ttggtgttgt gccccctccc
6901 tccacaagtt tagatgatac ctataggtac ttgcagtctc gcgccattac ttgccaaaag
6961 ggggccgccg ccgccaagcc taaggacgat ccttatgctg gcatgtcctt ttgggatgta
7021 gatttaaagg acaagttttc tactgatttg gatcagtatc ccttgggtcg caagttttta
7081 ttgcagtctg ccccacgttc caccctggtg tcccgtaaac gtacagcgtc tgcctctacc
7141 ccccctgcct ccaaacggcg taaggccaaa aagtaatatg tgtctgtttg tttggtgtct
7201 gtgtctgttt gtttggtgtc tgtacaatct ctgtgtgtgc cattttgtat gtgttttgta
7261 ctgttctgta tgtgccctgt tatgtataat gtgtatgtat ttatggaatg cgtgcccctg
7321 tatgttgtgt atgttgtgta catgtatttg tggaatgtgt gtcatgttat ggatcaataa
7381 attgtgtgtc attgtgggtt tcatgtccgg ctgcaccctg tgagtaagtg tgcaccatgt
7441 acacgcctgg gtaggtctac tgtttccttt aagggtataa agcctccatt ttgtatgcaa
7501 ccgttttcgg tctcccgcct tttcggtctg tggtatggca ctgtcccagg tacagctaat
7561 cctttggcag cccaacatcc tgcgtaggca gctgcagacg tccgcaccca ggtgtgtctg
7621 tcagctattt caatatgcta ataaatgtat tgtctacagt ttataggttt acttactcat
7681 ctgcaaaaaa tatgctttta ggcagttttt tggcctacaa ctttccctta agtgcatagt
7741 tggcaggccg tgcacactgt gctgccaggt ttctgtcttg taaaatacca caatacttat
7801 gtaacacacc cgtttcggtt gctatgttat tcatactatt ttcttatact ttacaacaat
7861 gatacagtaa aaaaataggg agggaccgaa ttcggtccca ccgaaaggga tacatatata
7921 aagggcagca aacggtaccc ggacagcc
//
