LOCUS AJ496286 2750 bp DNA circular VRL 17-MAY-2004
DEFINITION Cotton leaf curl Kokhran virus-[Faisalabad1] complete genome,
isolate Faisalabad x2f.
ACCESSION AJ496286
VERSION AJ496286.1
KEYWORDS AC1 gene; AC2 gene; AC3 gene; AC4 gene; AV1 gene; AV2 gene; coat
protein; complete genome; procoat protein; Rep protein; replication
enhancer protein; transcriptional activator protein;
transcriptional regulator protein.
SOURCE Cotton leaf curl Kokhran virus-[Faisalabad1]
ORGANISM Cotton leaf curl Kokhran virus-[Faisalabad1]
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus;
Cotton leaf curl Kokhran virus.
REFERENCE 1
AUTHORS Mansoor,S., Briddon,R.W., Bull,S.E., Bedford,I.D., Bashir,A.,
Hussain,M., Saeed,M., Zafar,Y., Malik,K.A., Fauquet,C. and
Markham,P.G.
TITLE Cotton leaf curl disease is associated with multiple monopartite
begomoviruses supported by single DNA beta
JOURNAL Arch. Virol. 148 (10), 1969-1986 (2003)
PUBMED 14551819
REFERENCE 2 (bases 1 to 2750)
AUTHORS Fauquet,C.M.
TITLE Direct Submission
JOURNAL Submitted (19-JUL-2002) Fauquet C.M., Iltab, Danforth Plant Science
Center, 975 North Warson Road, St Louis, Missouri, MO 63132, USA
FEATURES Location/Qualifiers
source 1..2750
/organism="Cotton leaf curl Kokhran virus-[Faisalabad1]"
/mol_type="genomic DNA"
/isolate="Faisalabad x2f"
/host="Gossypium hirsutum"
/db_xref="taxon:222466"
/country="Pakistan:Faisalabad"
gene 132..488
/gene="AV2"
CDS 132..488
/gene="AV2"
/codon_start=1
/product="procoat protein"
/protein_id="CAD42820.1"
/db_xref="GOA:Q8JLL2"
/db_xref="InterPro:IPR002511"
/db_xref="InterPro:IPR005159"
/db_xref="UniProtKB/TrEMBL:Q8JLL2"
/translation="MWDPLLNEFPDTVHGFRCMLAVKYLQLVQKTYSPDTLGYDLIRD
LILVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQAH
EQKAQDVQDVQKSRCS"
gene 292..1062
/gene="AV1"
CDS 292..1062
/gene="AV1"
/codon_start=1
/product="coat protein"
/protein_id="CAD42821.1"
/db_xref="GOA:Q777H9"
/db_xref="InterPro:IPR000263"
/db_xref="InterPro:IPR000650"
/db_xref="UniProtKB/TrEMBL:Q777H9"
/translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAW
ANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLT
HRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFD
NEPSTATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGK
YENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
gene complement(1059..1463)
/gene="AC3"
CDS complement(1059..1463)
/gene="AC3"
/codon_start=1
/product="replication enhancer protein"
/protein_id="CAD42822.1"
/db_xref="InterPro:IPR000657"
/db_xref="UniProtKB/TrEMBL:Q8JLL1"
/translation="MDSRTGELITAAQAENGVFIWEIQNPLYFKITEHHNRAFLMNRD
IITVQIQFNHNLRKALGIHKCFIAFRIWMTSQPPTGRFLRVFRTQVLKYLNNLGIVSI
NNVVRAVDHVLWNVLQHVVFVDQSSSIKFNIY"
gene complement(1204..1608)
/gene="AC2"
CDS complement(1204..1608)
/gene="AC2"
/codon_start=1
/product="transcriptional activator protein"
/protein_id="CAD42823.1"
/db_xref="GOA:Q8JLL0"
/db_xref="InterPro:IPR000942"
/db_xref="UniProtKB/TrEMBL:Q8JLL0"
/translation="MQSSSPSRAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIAL
ACHNHGFTHRGTHHCSSSREWRVYLGDSKSPVFQDNRAPQSSIPNEQRHHHRPDTVQS
QPEESVGDTQMFHSFPNLDDLTASDWSFLKGL"
gene complement(1511..2593)
/gene="AC1"
CDS complement(1511..2593)
/gene="AC1"
/codon_start=1
/product="Rep protein"
/protein_id="CAD42824.1"
/db_xref="GOA:Q777H8"
/db_xref="InterPro:IPR001191"
/db_xref="InterPro:IPR001301"
/db_xref="InterPro:IPR022690"
/db_xref="InterPro:IPR022692"
/db_xref="UniProtKB/TrEMBL:Q777H8"
/translation="MPPKRNGIYSKNYFITYPKCSLTKEEALSQLLNIQTPTSKKYIR
ICRELHEDGTPHLHVLIQFEGKFKCQNMRFFDLVSPSRSAHFHPNIQGAKSSSDVKSY
IEKDGDILDWGQFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQ
FHNLNANLDRIFQEPPAPYVSPFSSSSFDQVPEELEVWAAENVVSAAARANRPISVVI
EGDSRTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWFNVIDDVDPHYLKHFKEFMGA
QKDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFIT
LESPLYSGSNQSAAQASQEGDQTSES"
gene complement(2137..2439)
/gene="AC4"
CDS complement(2137..2439)
/gene="AC4"
/codon_start=1
/product="transcriptional regulator protein"
/protein_id="CAD42825.1"
/db_xref="InterPro:IPR002488"
/db_xref="UniProtKB/TrEMBL:Q777H7"
/translation="MGLLTCMFSSSSKGNSSARICDSSTWSPQAGQHISIRTYRELNP
APTSNPTSRRTGTFSTGGNFRSTEGQQEEGNRQPMTLTPQHLTREVSRRLLESLRN"
ORIGIN
1 accggatggc cgcgcgattt ttttgtgggc cctaccatta actcttgtcg gccaatcata
61 tgacgcgctc aaagcttaaa taattctccc gcttattata agtacttcgt tgctaagtat
121 gcgtttgaaa aatgtgggat ccactgttaa atgagttccc cgacaccgtt cacggtttta
181 ggtgtatgtt agcagttaaa tatttgcagt tagtacagaa aacttactct cctgatacat
241 tgggttacga tttgataagg gatttaatcc tggtaataag ggctaggaat tatgtcgaag
301 cgaccagcag atataatcat ttccacgccc gcttcgaagg tacgccgccg tctcaacttc
361 gacagcccat atgtgagccg tgctgctgcc cccattgtcc gcgtcaccaa agcaaaagca
421 tgggcgaaca ggcccatgaa cagaaagccc aggatgtaca ggatgtacag aagtccagat
481 gttcctagag gatgtgaagg tccatgtaag gttcagtcgt ttgagtccag acatgatatt
541 cagcatatag gtaaagtaat gtgtgttagt gatgttactc gtggtactgg gctgacccat
601 agagttggta agagattttg tgttaagtct gtttatgtgt tgggtaagat ctggatggat
661 gagaacatta agacgaagaa tcacacgaat agtgtgatgt ttttcttggt tagagatcgt
721 agacctgttg ataaacctca agattttgga gaggtattta atatgtttga taatgagccc
781 agtacggcga ctgtgaagaa tgttcatcgt gataggtatc aagttctgcg caaatggtat
841 gcaactgtca ccggtggaca atacgcttca aaggaacaag ctctcgtgaa gaaatttatt
901 agagttaata attatgttgt gtataaccag caggaagctg gcaagtatga gaatcattct
961 gagaatgctt taatgttgta tatggcgtgt actcacgcct ctaacccagt gtatgctacc
1021 ttgaagatac ggatctactt ctatgattcc gtgacaaatt aatagatatt gaattttatt
1081 gaagatgatt ggtctacaaa tacaacatgt tgtaatacat tccataatac atgatcaact
1141 gctctaacta cattattaat actgacaatt cctaagttat ttaaatattt aagcacttga
1201 gtcctaaaga cccttaagaa acgaccagtc ggaggctgtg aggtcatcca gattcggaaa
1261 gctatgaaac atttgtgtat ccccaacgct ttcctcaggt tgtgattgaa ctgtatctgg
1321 acggtgatga tgtctctgtt cattaggaat gctcgattgt ggtgctctgt tatcttgaaa
1381 tacaggggat tttgaatctc ccagataaac acgccattct ctgcttgagc tgcagtgatg
1441 agttcccctg tgcgtgaatc catggttgtg gcaggctaat gctatgaagt acgaacaccc
1501 acaagggaga tcaactctcc gacgtctggt ccccttcttg gctagcctgt gctgcacttt
1561 gattggaacc tgagtagagt gggctctcga gggtgatgaa gattgcattc tttaaagccc
1621 aatttttgag tgcagaattc ttctcttcat ccaaaaactc tttatagctt gaattgggtc
1681 ctggattgca gaggaagata gtgggaattc cgcctttaat ttgaactggc ttcccgtatt
1741 ttgtatttga ttgccagtcc ttttgggccc ccatgaactc cttaaagtgc tttaggtaat
1801 gcgggtcgac gtcatcaatg acgttaaacc aggcgtcatt actgtatacc cttgggctca
1861 gatctagatg tccacacaga taattatgtg gacctaatga tctggcccac atcgtcttcc
1921 ccgtcctact gtcaccctca atcactacac ttattggtct attggcccgc gcagcggcac
1981 tgacgacgtt ctcggcagcc cacacttcaa gttcttctgg aacttgatcg aaagaagaag
2041 aggaaaaagg agaaacataa ggagctggtg gctcctgaaa gattctgtct agatttgcat
2101 ttaaattatg aaattgcagt acaaaatcct taggagctag ttccttaatg actctaagag
2161 cctccgactt acttcccgcg ttaagtgctg cggcgtaagc gtcattggct gtctgttgcc
2221 ctcctcttgc tgaccttccg tcgatctgaa attgccccca gtcgagaatg tccccgtcct
2281 tctcgatgta ggatttgacg tcggagctgg atttagctcc ctgtatgttc ggatggaaat
2341 gtgctgacct gcttggggag accaagtcga agaatcgcat attctggcac ttgaatttcc
2401 cttcgaactg gatgagaaca tgcaagtgag gagtcccatc ttcgtgaagc tctctgcaga
2461 ttctaatata tttttttgaa gttggggttt gtatatttaa taattgggaa agtgcttcct
2521 ctttggtgag agaacatttg ggataagtta tgaaatagtt tttggaataa ataccgttcc
2581 gctttggagg catgttgact aaaattgaat caccgattga ccgttcttgc aaactctccc
2641 cggtatatcg gtgatcaata tatagtgatc accaaatggc ataatggtaa taaaaaaact
2701 ttaatttgaa attcaaacca aaaggctaaa gcggccatcc gtttaatatt
//
