LOCUS AY302544 7433 bp RNA linear VRL 29-DEC-2003
DEFINITION Human echovirus 19 strain Burke complete genome.
ACCESSION AY302544
VERSION AY302544.1
KEYWORDS .
SOURCE Echovirus E19
ORGANISM Echovirus E19
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Picornaviridae; Ensavirinae; Enterovirus;
Enterovirus B.
REFERENCE 1 (bases 1 to 7433)
AUTHORS Oberste,M.S., Maher,K. and Pallansch,M.A.
TITLE Evidence for frequent recombination within species human
enterovirus B based on complete genomic sequences of all
thirty-seven serotypes
JOURNAL J. Virol. 78 (2), 855-867 (2004)
PUBMED 14694117
REFERENCE 2 (bases 1 to 7433)
AUTHORS Oberste,M.S., Maher,K. and Pallansch,M.A.
TITLE Direct Submission
JOURNAL Submitted (19-MAY-2003) Respiratory and Enteric Virus Branch,
Centers for Disease Control and Prevention, 1600 Clifton Rd NE,
Mailstop G-17, Atlanta, GA 30333, USA
FEATURES Location/Qualifiers
source 1..7433
/organism="Echovirus E19"
/mol_type="genomic RNA"
/strain="Burke"
/db_xref="taxon:47507"
5'UTR 1..742
CDS 743..7333
/codon_start=1
/product="polyprotein"
/protein_id="AAQ73081.1"
/translation="MGAQVSTQKTGAHETGLNASGNSIIHYTNINYYKDAASNSANRQ
DFTQDPGKFTEPVKDIMIKSMPALNSPSAEECGYSDRVRSMTLGNSTITTQECANVVV
AYGRWPEYLKDKEATAEDQPTQPDVATCRFYTLESVSWETSSDGWWWKFPDALKEMGL
FGQNMFYHYLGRAGYTIHVQCNASKFHQGCLLVVCVPEAEMGCATTDRVVNEASLSGG
EHAKTFSNTKANGTNTVQTIVTNAGMGVGVGNLTIYPHQWINLRTNNSATIVMPYINS
VPMDNMFRHHNFTLMIIPFVPLEYASTASTYVPITVTVAPMCAEYNGLRLATPLQGLP
VMNTPGSNQFLTSDDFQSPSAMPQFDVTPEMDIPGEVHNLMEIAEVDSVVPVNNVPGK
LDSMDIFRIPVKSGNHQSEQVFGFQMQPGLDNVLKHTLLGEILNYYAHWSGSVKLTFT
FCGSAMATGKFLLAYSPPGANAPKSRKDAMLGTHIIWDVGLQSSCVLCIPWISQTHYR
LVQQDEYTSAGFITCWYQTGIVVPAGTPTSCSILCFASACNDFSVRLLRDTPFISQKA
LLQGDIVEAVEGAISRVADTVSSGPSNSQAVPALTAVETGHTSQVNPSDTMQTRHVTN
YHSRSESSIENFLSRSACVYMGEYSTQASDETKKYMSWTISPRRMVQMRRKFELFTYL
RFDVEITFVITSRQVKVGTQLGQDAPPLTHQVMYIPPGGPVPDSVGDYAWQTSTNPSI
FWTEGNASPRMSIPFISIGNAYSNFYDGWSHFHQNGVYGYNTLNHMGQLYVRHVNGPS
PLPVTSTVRVYFKPKHVKAWVPRAPRLCQYVNASTVNFEPTDITESRTDINHVPDTVK
PDLQTYGAFGQQSGAVYVGNYRVVNRHLASHADWQNCVWEDYNRDLLVSTTTAHGCDT
IARCQCTTGVYFCRSRNKHYPVSFEGPGLVEVQESDYYPKKYQSHVLLAAGFTEPGDC
GGILRCEHGVVGIVTMGGEGVVGFADVRDLLWLEDDAMEQGVKDYVEQLGNAFGTGFT
NQICEQVSILKESLVGQDSILEKSLKALVKIISALVIVVRNHDDLITVTATLALIGCT
SSPWRWLKQKVSQYYGIPMAERQNNGWLKKFTEMTNACKGMEWIAVKIQKFIEWLKAK
ILPEVREKHEFLNRLKQLPLLESQIATIEQSAPSQSDQEHLFSNIQYFAHYCRKYAPL
YAAEAKRVFSLEKKMSNYIQFKSKCRIEPVCLLLHGSPGAGKSVATNLIGRSLAEKLN
SSVYSLPPDPDHFDGYKQQAVVIMDDLCQNPDGKDVSLFCQMVSSVDFVPPMAALEEK
GILFTSPFVLASTNAGSINAPTVSDSRALARRFHFDMNIEVISMYSQNGKINMPMSVK
TCDEECCPVNFKKCCPLVCGKAIQFIDRRTQVRYSLDMLVTEMFREYNHRHSVGATLE
ALFQGPPVYREIKISVAPETPPPPAIADLLKSVDSEAVREYCKDKGWLVPEVSSTLQI
EKHVSRAFICLQAITTFVSVAGIIYIIYKLFAGFQGAYTGMPNQKPKVPTLRQAKVQG
PAFEFAVAMMKRNSSTVKTEYGEFTMLGIYDRWAVLPRHAKPGPTILMNDQEVGVLDA
KELVDKDGTNLELTLLKLNRNEKFRDIRGFLAKEEVEVNEAVLAINTSKFPNMYIPVG
QVTDYGFLNLGGTPTKRMLMYNFPTRAGQCGGVLMSTGKVLGIHVGGNGHQGFSAALL
KHYFNDEQGEIEFIENSKDAGFPIINAPSKTKLEPSVFHQVFEGNKEPAVLRNGDPRL
KANFEEAIFSKYIGNVNTHVDEYMLEAVDHYAGQLATLDISTEPMKLEDAVYGTEGLE
ALDLTTSAGYPYVALGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKDELRSAE
KVAKGKSRLIEASSLNDSVAMRQTFGNLYKTFHLNPGIVTGSAVGCDPDLFWSKIPVM
LDGHLIAFDYSGYDASLSPVWFACLKMLLEKLGYTHKETNYIDYLCNSHHLYRDKYYF
VRGGMPSGCSGTSIFNSMINNIIIRTLMLKVYKGIDLDQFRMIAYGDDVIASYPWPID
ASLLAAAGKDYGLIMTPADKGECFNEVTWTNVTFLKRYFRADEQYPFLVHPVMPMKDI
HESIRWTKDPKNTQDHVRSLCLLAWHNGEREYEEFIRKIRSVPVGRCLTLPAFSTLRR
KWLDSF"
mat_peptide 743..949
/product="VP4"
mat_peptide 950..1735
/product="VP2"
mat_peptide 1736..2449
/product="VP3"
mat_peptide 2450..3328
/product="VP1"
mat_peptide 3329..3778
/product="2A"
mat_peptide 3779..4075
/product="2B"
mat_peptide 4076..5062
/product="2C"
mat_peptide 5063..5329
/product="3A"
mat_peptide 5330..5395
/product="VPg"
mat_peptide 5396..5944
/product="3C"
mat_peptide 5945..7330
/product="3D"
3'UTR 7334..7433
ORIGIN
1 ttaaaacagc ctgtgggttg tacccaccca cagggcccaa tgggcgctag cactccggta
61 ttacggtacc cttgtgcgcc tgttttattt ccccttcccc aactgaaact tagaagaaat
121 acacaatgat cgacagtaag cgtggcgcac cagccatgtt ttgatcaagc acttctgttt
181 ccccggacca agtatcaata gactgctcac gcggttgaag gagaaagcgt tcgttaaccg
241 gctaactact tcgagaaacc cagtaacacc atgaaagttg cagagtgttt cgctcagcac
301 tcccccagtg tggatcaggt cgatgagtca ctgcgttccc cacgggtgac cgtggcagtg
361 gctgcgttgg cggcctgcct gtggggcaac ccacaggacg ctctaatacg gacatggtgt
421 gaagagtcta ttgagctagt tagtagtcct ccggcccctg aatgcggcta atcctaactg
481 tggagcacat gcccctaacc caaggggtgg tgtgtcgtaa tgggtaactc cgcagcggaa
541 ccgactactt tgggtgaccg tgtttccttt tatttttaca ttggctgcat atggtgacga
601 ttgagagatt gttgccatat agctattgga ttggccatcc agtgtctaac agagctattg
661 tatatctttt tgttggattt gtaccacttg acttgaaaga ggtcaggaca ctacaataca
721 ttatactgct gaatactgca aaatgggagc gcaagtatct acccaaaaaa ccggggcaca
781 tgagactggc ttgaatgcta gtggaaactc catcatccat tacacaaata taaactacta
841 caaggatgca gcttcaaact ctgcaaatcg acaagacttt actcaagacc ccggcaagtt
901 cacagaacca gtaaaggaca taatgattaa atccatgcca gcactaaact cgccatccgc
961 tgaagagtgc gggtacagcg atagggtgcg ttcgatgaca ctaggtaact ccaccatcac
1021 aacgcaagag tgtgcaaacg tggttgtggc gtatggtaga tggccggagt atcttaagga
1081 taaagaagcc acggcagagg atcaacccac acagccagac gttgcaacgt gcagatttta
1141 caccttagag tcagtgtctt gggagacttc atcagacgga tggtggtgga agtttccaga
1201 tgctttaaaa gagatggggt tgtttggcca aaacatgttt taccactacc tgggcagggc
1261 aggatacacc atacatgtac agtgtaacgc atccaaattt caccaaggtt gcttgctggt
1321 ggtttgtgta ccagaggcgg aaatgggctg cgctaccacg gacagggtgg ttaatgaggc
1381 aagtctcagc ggtggtgaac acgctaagac gttttccaac acgaaggcca atgggaccaa
1441 tactgtgcag accatagtca ccaatgctgg catgggtgtc ggggttggca acttaactat
1501 ataccctcat cagtggatca acctacgcac taacaacagt gctacaatag tcatgccgta
1561 tataaacagt gtaccgatgg acaacatgtt taggcatcac aatttcacct taatgatcat
1621 cccattcgta ccattagagt acgcctcgac ggcctccaca tacgtgccga taactgtcac
1681 tgtggcacca atgtgcgctg agtacaatgg tctgagattg gctacaccac tgcagggttt
1741 acctgtgatg aacaccccag gaagtaacca attcctcacg tctgacgact tccagtcgcc
1801 gtccgctatg ccccagttcg acgtgacacc cgagatggac ataccaggtg aagtacacaa
1861 tttgatggaa attgctgagg ttgactctgt ggtaccagta aacaacgtcc caggcaaact
1921 agacagcatg gacatattca ggatcccagt caaaagtggc aaccatcaga gtgaacaggt
1981 ttttggtttc caaatgcaac caggcttgga taatgtgcta aaacacacgc tgttggggga
2041 gattttgaat tactacgcac actggtctgg tagtgtcaag ttgaccttca ccttttgtgg
2101 ctcagcaatg gcaactggaa agttcctgtt agcgtattcg cccccgggtg ccaatgcccc
2161 aaagagtagg aaagacgcta tgttgggcac gcacattata tgggatgtgg ggttacagtc
2221 cagctgcgta ctgtgcatac catggattag ccagacacac tacaggctcg tgcaacaaga
2281 tgagtatact agcgcagggt tcattacatg ctggtaccaa acagggatcg ttgtgccagc
2341 cgggactccc accagttgct cgatactatg ctttgcttct gcgtgtaacg acttttcagt
2401 acgattgcta cgcgacaccc cgtttataag tcaaaaagcc ctcctccagg gagacatcgt
2461 ggaggctgtg gagggagcca tctcgcgagt ggcagatact gttagtagtg ggcccagtaa
2521 ctctcaagca gtaccagccc tcacagcagt cgaaacgggt cacacttctc aagtcaatcc
2581 tagtgacacc atgcagacca gacacgtgac aaattaccac tcgcggtcag aatccagcat
2641 agaaaatttc cttagccgct ctgcttgtgt gtatatgggc gaatacagca cacaagcatc
2701 agatgagacc aaaaagtaca tgtcatggac cataagccca aggaggatgg ttcaaatgcg
2761 caggaagttt gagctcttca cttacctgcg ttttgatgtg gagattactt ttgtaatcac
2821 cagcagacaa gtcaaggtag ggacacaatt aggccaagat gcccccccgc taactcacca
2881 agtcatgtat atacccccag gaggcccagt acctgattca gttggtgatt acgcatggca
2941 gacttccact aaccctagta tcttttggac cgaaggtaat gcatcaccca ggatgtcaat
3001 acccttcatt agcataggta acgcctatag caacttttat gacgggtggt cgcattttca
3061 ccagaatggc gtctatggat acaacacgct gaaccatatg gggcaactgt acgtgcggca
3121 tgttaacggc ccttcaccat taccagtgac aagcacagtc agggtctact ttaaacccaa
3181 acacgtgaag gcttgggtac cgagggcacc caggctatgt caatatgtaa atgcatccac
3241 tgtgaacttc gagccaacag acatcactga gtcacgcact gacatcaacc atgttccaga
3301 caccgtgaag ccagatctcc aaacatacgg agcctttgga cagcaatctg gggcggtgta
3361 cgtgggcaac tatagagtgg ttaatagaca cttggcatcc cacgctgatt ggcaaaactg
3421 tgtgtgggaa gactacaaca gggaccttct tgtgagcacc accaccgctc acggttgtga
3481 taccatagct aggtgtcagt gcacgacggg ggtttacttc tgccgatcga ggaacaagca
3541 ctatccggtt agttttgaag gtcctggatt agtggaggtt caggagagcg attattaccc
3601 aaagaagtac caatcgcatg tgcttttggc agccgggttc actgagcctg gcgactgtgg
3661 cggcatcttg aggtgtgagc atggcgtagt tggcatcgtc accatgggcg gtgaaggagt
3721 ggttggcttt gctgacgtcc gcgacttgct ttggttggaa gacgatgcga tggaacaggg
3781 agtcaaagat tatgtggaac aacttggaaa cgctttcgga actggcttta ctaaccagat
3841 ttgtgaacaa gttagcatac tgaaagagtc cctagtgggt caagattcca tattggaaaa
3901 atctttgaag gccctagtaa agataatatc agccttagta attgtggtga gaaatcatga
3961 cgatctgatt accgtaactg ccacgttagc cctcatcggc tgtacatcat ccccgtggcg
4021 ttggcttaag cagaaggtat cacaatatta cgggattccc atggctgagc gccagaacaa
4081 cgggtggctc aagaaattca cggagatgac caatgcgtgc aaaggcatgg aatggattgc
4141 tgtcaagatt cagaagttca ttgaatggct caaagctaaa attttaccag aagtcaggga
4201 aaaacacgag ttcctgaaca gactcaagca gctcccttta ctagaaagtc agattgctac
4261 aattgagcag agtgcaccgt ctcaaagtga tcaggagcat ttgttttcta atatccaata
4321 cttcgctcac tattgtagga agtatgcccc cctgtatgca gcggaagcga agagggtgtt
4381 ctccctcgag aagaaaatga gcaattacat acagttcaag tccaaatgcc gtattgaacc
4441 tgtatgttta ctcctacacg ggagccctgg tgccggcaag tcggtggcaa caaaccttat
4501 tggaaggtca cttgccgaga agctaaacag ctcagtttac tcactaccac cggacccaga
4561 tcactttgac ggctacaaac aacaggccgt ggtgatcatg gacgatctat gccagaaccc
4621 tgacggaaag gatgtttcct tattctgtca aatggtctcc agtgtagact ttgtaccgcc
4681 tatggctgct ttggaagaaa aaggcatctt gttcacctca ccgtttgttt tggcatcaac
4741 caatgcaggg tccatcaatg ctccaactgt atcagacagt agagccttag caaggaggtt
4801 ccactttgac atgaatattg aagtcatttc catgtacagt caaaacggca aaataaacat
4861 gccaatgtca gtgaagacgt gtgatgaaga gtgttgccct gtcaacttca agaaatgttg
4921 cccgttagtg tgtggaaagg ccatccaatt tatagacaga agaactcaag tcagatattc
4981 cctcgacatg ctggtaactg agatgttcag ggaatacaac cataggcaca gtgtaggggc
5041 cacccttgag gcactgtttc agggtccacc agtatacagg gagattaaga tcagcgtggc
5101 accagagacg ccaccaccac cagccattgc ggacttactt aaatctgtgg atagtgaagc
5161 tgtgagagaa tattgcaaag ataagggatg gttggttcct gaggtcagct ccaccctcca
5221 aatagagaaa catgttagcc gggctttcat ctgtctgcag gcaataacca cattcgtgtc
5281 agtagctgga attatctaca taatatacaa gctctttgca ggtttccaag gcgcgtacac
5341 aggaatgccc aaccagaaac ccaaggtacc cactctaagg caagcaaaag tgcagggtcc
5401 tgcatttgaa ttcgccgttg cgatgatgaa gaggaactct agcacagtga agaccgagta
5461 tggtgagttc accatgttgg gcatctatga taggtgggcc gtcttgccgc gtcatgccaa
5521 acctggacca accatcttga tgaatgacca ggaggtgggt gtgttggatg ctaaagagtt
5581 ggtggataag gatggtacga atctagaact gacactactc aagctgaaca ggaacgagaa
5641 attcagagac attagggggt tcttagccaa ggaggaggtg gaggttaatg aggctgtgct
5701 agcaatcaac accagcaagt ttcccaacat gtacatccca gtaggacaag tcacagatta
5761 tggtttcctg aatctaggcg gcacacccac aaagagaatg cttatgtaca acttccccac
5821 aagggccggt cagtgtggcg gggtgctcat gtccaccggt aaagtcctag ggatccacgt
5881 tggggggaat ggtcatcaag gcttttcagc tgcactcctt aaacactatt tcaatgatga
5941 acaaggtgaa atcgagttca tcgagaactc taaagatgca gggtttccaa tcatcaacgc
6001 acctagcaag accaaattgg agccgagtgt ctttcaccaa gtctttgaag gcaataaaga
6061 gccagcagtt ctcaggaatg gtgatccacg tctcaaagct aatttcgagg aggccatctt
6121 ttctaaatac atcggaaatg tcaacacaca tgtggatgaa tacatgctgg aagccgtcga
6181 ccattacgct ggacaattgg ccaccctaga catcagcact gaaccaatga aattggagga
6241 tgctgtgtac gggactgaag gccttgaagc tcttgattta acaacaagcg caggataccc
6301 ctatgttgca ctgggcatca agaagagaga catcctctca aagaagacca aggacctaac
6361 taagctaaaa gagtgcatgg ataagtatgg tctgaaccta ccaatggtga cttatgtgaa
6421 agatgagctc aggtctgcag agaaggtagc aaaaggaaag tccaggctga ttgaagcatc
6481 cagtttgaat gattcagtgg caatgagaca gacatttggt aacctgtaca aaaccttcca
6541 cctgaaccca gggattgtga ctggtagtgc agttgggtgt gacccagacc tcttttggag
6601 caaaatacca gtgatgttgg atggacatct catagcattt gattactctg ggtatgatgc
6661 tagtttaagt cctgtctggt ttgcttgctt gaaaatgcta cttgagaagc ttggatacac
6721 acacaaagag acaaattaca ttgactactt gtgcaactcc caccacctgt acagagataa
6781 gtattacttt gtgaggggtg gcatgccctc agggtgttct ggcaccagta tctttaactc
6841 aatgatcaac aacatcataa tcaggacact aatgctgaag gtgtacaagg gaatcgactt
6901 ggaccagttc aggatgatcg catatggtga tgatgtaatt gcgtcatacc catggcccat
6961 agatgcatcc ttactcgccg cggctggtaa ggattacggg ttgatcatga caccagcaga
7021 taagggagag tgctttaatg aagtcacctg gaccaacgtc actttcctaa agaggtattt
7081 tagagcagat gaacagtacc ccttcttggt gcaccctgtt atgcccatga aagacataca
7141 tgagtcaatt agatggacca aagacccaaa gaacacccaa gatcatgtgc gctcactgtg
7201 tctattggcc tggcacaacg gagagcgtga atatgaggag ttcatccgca aaattagaag
7261 cgtaccagtc ggacgttgct tgaccctccc tgcgttttca accctacgca ggaaatggtt
7321 ggactctttc taaattggag acaatttgaa ataatttgaa ttggcttaac cctactgtac
7381 taaccgaact agataatggt gcagtagggg taaattttcc gcattcggtg cgg
//
