LOCUS AY302552 7427 bp RNA linear VRL 29-DEC-2003
DEFINITION Human echovirus 29 strain JV-10 complete genome.
ACCESSION AY302552
VERSION AY302552.1
KEYWORDS .
SOURCE Echovirus E29
ORGANISM Echovirus E29
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Picornaviridae; Ensavirinae; Enterovirus;
Enterovirus B.
REFERENCE 1 (bases 1 to 7427)
AUTHORS Oberste,M.S., Maher,K. and Pallansch,M.A.
TITLE Evidence for frequent recombination within species human
enterovirus B based on complete genomic sequences of all
thirty-seven serotypes
JOURNAL J. Virol. 78 (2), 855-867 (2004)
PUBMED 14694117
REFERENCE 2 (bases 1 to 7427)
AUTHORS Oberste,M.S., Maher,K. and Pallansch,M.A.
TITLE Direct Submission
JOURNAL Submitted (19-MAY-2003) Respiratory and Enteric Virus Branch,
Centers for Disease Control and Prevention, 1600 Clifton Rd NE,
Mailstop G-17, Atlanta, GA 30333, USA
FEATURES Location/Qualifiers
source 1..7427
/organism="Echovirus E29"
/mol_type="genomic RNA"
/strain="JV-10"
/db_xref="taxon:47512"
5'UTR 1..742
CDS 743..7327
/codon_start=1
/product="polyprotein"
/protein_id="AAQ73089.1"
/translation="MGAQVSTQKTGAHETGLNASGNSIIHYTNINYYKDAASNSANRQ
DFSQDPSKFTEPVKDVMIKTLPALNSPTVEECGYSDRVRSITLGNSTITTQECANVVV
GYGVWPEYLSDREATAEDQPTQPDVATCRFYTLESVAWSQNSAGWWWKFPDALKDMGL
FGQNMAYHYLGRSGYTIHVQCNASKFHQGCLLVVCVPEAEMGAANINTTINHTKLSNG
EVASEFKPNAXNDTNGVQAAVYNAGMGVAVGNLTIFPHQWINLRTNNSATIVMPYINS
VPMDNMYRHYNFTLMIIPFAKLDYATGSSTYVPITVTVAPMCAEYNGLRLAGHQGLPV
MCTPGSNQFLTSDDFQSPSAMPQFDVTPEMLIPGEVKNMMEIAEVDSLVPVNNLAAHI
NSVEAYAIPVQSVTQTGQQVFGFNLQPGADSVFKRTLLGEVLNYYANWSGSIKLTFMY
CGSAMATGKFLIAYSPPGAGVPTTRKEAMLGTHIIWDIGLQSSCVLCVPWISQTHYRY
VIHEPYTDAGFVTCWYQTSIVVPADVQNKSTILCFVSACNDFSVRLLRDTPFITQAAF
FQNEPSSAIERAIVRVADTMASGPANSEQIPALTAAETGHTSQVVPSDTMQTRHVCNY
HTRSESSIENFLCRAACVYIVSYKTQGDEQTDKYASWEINTRQVAQLRRKLEFFTYIR
FDMEVTFVITGSQDTSTQTNTDTPVLTHQIMYVPPGGPVPTSATDYSWQTSTNPSVFW
TEGNAPPRMSIPFMSIGNAYANFYDGWSHFSQSGVYGYTTLNNMGTLYFRHVNNSTIG
PYTSAVRIYFKPKHVKAWVPRPPRLCDYKHKKNVDFTPTGVTTTRDKITLDKGTHVPS
VWNTGAFGQQSGAIYVGNYRVVNRHLATHADWQHCVWEDYNRDLLVSTTTAHGCDVIA
RCQCTTGVYFCQSRNKHYPVSFEGPGLVEVQESEYYPKRYQSHVLLAAGFSEPGDCGG
ILRCEHGVIGIVTMGGEGIVGFADVRDLLWLEDDAMEQGVKDYVEQLGNAFGSGFTNQ
ICEQVNLLKESLVGQDSILEKSLKALVKIISALVIVVRNHDDLITVTATLALIGCTSS
PWRWLKQKVSQYYGIPMAERQNNGWLKKFTEMTNACKGMEWIAIKIQKFIEWLKVKIL
PEVKERHEFLNRLKQLPLLESQIATIEQSAPSQSDQEQLFSNVQYFAHYCRKYAPLYA
AEAKRVFSLEKKMSNYIQFKSKCRIEPVCLLLHGSPGAGKSVATNLIGRSLAEKLNSS
VYSLPPDPDHFDGYKQQAVVIMDDLCQNPDGKDVSLFCQMVSSVDFVPPMAALEEKGI
LFTSPFVLASTNAGSINAPTVSDSRALARRFHFDMNIEVISMYSQNGKINMPMSVKTC
DDECCPANFKKCCPLVCGKAIQFIDRRTQVRYSLDMLVTEMFREYNHRHSVGATLEAL
FQGPPVYREIKISVAPETPPPPAITDLLKSVDSEAVREYCKERGWLVPEVSSTLQIEK
HISRAFICLQALTTFVSVAGIIYIIYKLFAGFQGAYTGMPNQKPKVPTLRQAKVQGPA
FEFAVAMMKRNSSTVKTEYGEFTMLGIYDRWAVLPRHAKPGPTILMNDQEVGVLDAKE
LVDKDGTNLELTLLKLNRNEKFRDIRGFLAKEEVEVNEAVLAINTSKFPNMYIPVGQV
TDYGFLNLGGTPTKRMLMYNFPTRAGQCGGVLMSTGKVLGIHVGGNGHQGFSAALLKH
YFNDEQGEIEFIENSKEAGFPVINTPSKTKLEPSVFHQVFEGNKEPAVLRNGDPRLKA
NFEEAIFSKYIGNVNTHVDEYMLEAVDHYAGQLATLDISTEPMKLEDAVYGTEGLEAL
DLTTSAGYPYVALGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKDELRSAEKV
AKGKSRLIEASSLNDSVAMRQTFGNLYKTFHLNPGVVTGSAVGCDPDLFWSKIPVMLD
GHLIAFDYSGYDASLSPVWFACLKMLLEKLGYTHKETNYIDYLCNSHHLYRDKHYFVR
GGMPSGCSGTSIFNTMINNIIIRTLMLKVYKGIDLDQFRMIAYGDDVIASYPWPIDAS
LLAEAGKDYGLIMTPADKGECFNEVTWTNVTFLKRYFRADEQYPFLVHPVMPMKDIHE
SIRWTKDPKNTQDHVRSLCLLAWHNGEHEYEEFIRRIRSVPVGRCLTLPAFSTLRRKW
LDSF"
mat_peptide 743..952
/product="VP4"
mat_peptide 953..1732
/product="VP2"
mat_peptide 1733..2446
/product="VP3"
mat_peptide 2447..3322
/product="VP1"
mat_peptide 3323..3772
/product="2A"
mat_peptide 3773..4069
/product="2B"
mat_peptide 4070..5056
/product="2C"
mat_peptide 5057..5323
/product="3A"
mat_peptide 5324..5389
/product="VPg"
mat_peptide 5390..5938
/product="3C"
mat_peptide 5939..7324
/product="3D"
3'UTR 7328..7427
ORIGIN
1 ttaaaacagc ctgtgggttg atcccaccca cagggcccac tgggcgctag cactctggta
61 tcacggtacc tttgtgcgcc tgttttatac ttcctccccc aactgcaact tagaagtaac
121 acaaaccgat caacagtcag cgtggcacac cagccacgtt ttgatcaaac acttctgtta
181 ccccggactg agtatcaata gactgctcac gcggttgaag gagaaaacgt tcgttatccg
241 gccaactact tcgagaaacc tagtaacgcc atggaagttg tggagtgttt cgctcagcac
301 taccccagtg tagatcaggt tgatgagtca ccgcattccc cacgggtgac cgtggcggtg
361 gctgcgttgg cggcctgccc atggggaaac ccatgggacg ctcttataca gacatggtgc
421 gaagagtcta ttgagctagt tggtagtcct ccggcccctg aatgcggcta atcccaactg
481 cggagcatac actctcaagc cagagggtag tgtgtcgtaa tgggcaactc tgcagcggaa
541 ccgactactt tgggtgtccg tgtttcattt tattcctata ctggctgctt atggtgacaa
601 ttgagagatt gttaccatat agctattgga ttggccatcc ggtgactaac agagctatta
661 tatatctttt tgttgggttt ataccactta gcttgaaaga ggttaaaact ctacattaca
721 ttttaatact gaacaccgca aaatgggagc gcaagtatca actcaaaaga caggagctca
781 tgagactggc ttaaacgcca gtggaaattc catcattcac tacacaaaca tcaactacta
841 taaggatgct gcatcaaatt ctgcaaacag acaagatttt tctcaagacc ccagcaagtt
901 cactgaacca gtgaaggatg ttatgataaa gaccctacca gcactgaatt cgcccactgt
961 ggaggagtgc ggatatagcg acagggtaag gtctatcact cttggcaata gcaccataac
1021 cacccaggag tgcgccaacg tggttgttgg gtatggggtt tggcccgagt acttgtcaga
1081 tagggaagca acagcggaag accagccaac tcaaccggat gtagcgacgt gtaggttcta
1141 cactttagaa tcagtggcat ggtctcaaaa ttcagctggg tggtggtgga aatttcctga
1201 cgcactaaaa gacatgggtt tatttggtca aaacatggca taccactact tgggtagaag
1261 tgggtatacc atccatgtgc agtgcaatgc ctctaaattc caccaggggt gcttgctagt
1321 ggtgtgcgtg ccagaagcgg aaatgggggc agccaacatc aacaccacga tcaaccacac
1381 taaattgagt aatggtgaag tggcaagcga gttcaaacct aatgccawta atgataccaa
1441 cggggtacaa gcagcagtat acaacgcagg catgggtgtg gcagttggca acctcactat
1501 atttccacac caatggatca acttgcgtac aaacaatagt gctactattg ttatgccata
1561 catcaatagt gtaccaatgg acaatatgta caggcactac aactttacgc tcatgataat
1621 tccattcgca aaacttgatt acgctactgg gtcatcgacc tatgtgccta tcacagtcac
1681 tgtagcgcca atgtgtgcgg agtacaatgg gcttaggcta gccggacacc aaggcctacc
1741 tgtaatgtgc actcctggta gcaaccaatt tctaacttcg gatgacttcc aatccccatc
1801 agccatgccc cagtttgacg tgacaccaga gatgttgatt ccaggggagg tgaaaaacat
1861 gatggagata gcagaggtgg actctttagt ccctgtcaac aacctggccg cacacatcaa
1921 cagtgtggag gcctacgcta tccctgtgca atcagtcacc caaactggtc aacaagtatt
1981 tgggtttaac ctgcaacctg gagcagactc tgtgtttaag aggaccctat tgggcgaggt
2041 cctgaactac tatgcaaatt ggtctggcag catcaagttg acctttatgt attgtggttc
2101 tgctatggct acaggtaaat tcctcatagc ttattcacca cctggtgcag gagtccccac
2161 caccagaaag gaagccatgc tagggacaca catcatttgg gatattgggt tacaatccag
2221 ttgtgtgcta tgtgtgccat ggatcagcca aacacactac aggtatgtga tccatgagcc
2281 gtacacagat gctgggttcg tcacgtgctg gtaccagacc agcattgtgg tgccagctga
2341 cgtgcagaat aagagtacta tcctctgttt tgtgtctgct tgcaatgact tctctgtcag
2401 actgctgcgt gacacaccat tcatcaccca ggcagctttc ttccagaatg aacctagtag
2461 tgccattgag agagcaattg tgcgcgtagc agatactatg gccagtgggc ctgcaaactc
2521 agagcaaatc cctgccctaa ccgctgctga gactggtcac acctcgcaag tggttcccag
2581 cgacactatg caaacccgcc atgtatgtaa ctaccacacc agatctgaat catcgatcga
2641 gaacttccta tgcagggctg catgtgtcta catagtgagt tacaaaacac agggcgacga
2701 acaaaccgac aaatacgcta gttgggagat caacacgcgg caggtggcac agttaaggag
2761 aaaattggaa ttctttactt acataagatt tgacatggag gtaacatttg tgatcactgg
2821 ttcacaagac accagcacac agactaacac ggatacgcca gtgctaaccc atcaaattat
2881 gtatgtgcct cccggtggtc cagtaccgac atcagccaca gattacagct ggcagacatc
2941 tacaaatccc agtgtgttct ggacagaagg gaatgcgcct ccccgtatgt ccataccctt
3001 catgagcata ggcaatgcgt atgctaattt ctatgatggg tggtcgcact ttagccagtc
3061 aggggtgtat ggttacacca cactcaataa tatgggtacc ctgtatttca ggcacgtgaa
3121 caactcgacc atcgggcctt acaccagtgc agttaggata tatttcaagc caaagcacgt
3181 caaagcgtgg gtgccacgac cgccacggtt gtgcgattac aaacacaaaa agaacgtaga
3241 ctttactccc acaggtgtga ccacaactag agacaagata accttggaca aggggactca
3301 cgtgccgagc gtatggaaca caggggcttt tggccaacag tcaggcgcaa tttacgtagg
3361 gaactacagg gtggtgaaca ggcacctagc tactcacgca gactggcaac actgcgtgtg
3421 ggaggattat aacagggact tattggtcag caccaccaca gcacacggat gcgacgtcat
3481 tgccagatgc cagtgcacaa caggggtata cttctgtcaa tctaggaata agcactaccc
3541 agtgagtttt gaagggccag ggctcgtgga agtgcaagag agtgagtact accccaaaag
3601 atatcaatct catgtcctcc tcgcagctgg attttcagaa ccaggggact gtggcggaat
3661 actcaggtgt gagcatggtg tcatcggcat tgtcaccatg ggtggagaag gtattgttgg
3721 atttgccgat gtgcgtgacc tgctatggtt agaggatgat gcaatggaac agggggtcaa
3781 ggactatgtc gaacaactcg gcaatgcctt tggttcgggc ttcaccaatc aaatatgtga
3841 acaggttaac ctcttgaaag agtcgctggt gggtcaagac tctatcctag agaagtctct
3901 aaaggctcta gtcaaaataa tatcagcctt agtaattgtg gtgagaaacc acgatgacct
3961 aatcacggta actgccacac tagccctcat tggatgtacc tcgtccccgt ggcggtggct
4021 caaacagaag gtgtcacaat actatgggat tcccatggct gaacgccaga ataatggatg
4081 gctcaagaag tttactgaga tgacaaatgc ctgcaaaggc atggagtgga tagccattaa
4141 aatccagaaa ttcatagagt ggctcaaggt taagatcctg ccagaggtta aggaaagaca
4201 tgaattcctg aacagactta aacagctccc tctattagag agtcagatcg ccacaatcga
4261 gcagagcgca ccatcccaga gtgaccagga acaattattt tcaaatgtcc agtactttgc
4321 ccactattgc aggaagtatg cccccctcta tgcagcggag gcaaagagag tgttctccct
4381 tgagaagaag atgagcaatt acatacagtt caagtccaaa tgccgtattg agcctgtatg
4441 tttgctccta cacgggagcc ctggtgccgg taagtcagta gcaacaaact taattggaag
4501 gtcactcgct gagaagttga acagctcagt gtattcgctg ccaccagacc cagatcactt
4561 cgacggatac aagcaacaag ctgtggtgat catggacgat ttatgccaga accctgatgg
4621 aaaagacgtc tccttgttct gccaaatggt ttccagcgta gattttgtgc cacccatggc
4681 tgctttagaa gagaaaggca ttttatttac ctctccgttc gtcttggcat cgaccaatgc
4741 agggtccatc aacgccccaa cagtgtcaga cagcagggcc ttggcaagga gattccactt
4801 tgacatgaac atcgaagtta tttccatgta cagtcaaaat ggtaagataa acatgcccat
4861 gtcagttaag acttgtgatg atgagtgctg tccggcaaat ttcaaaaagt gttgccctct
4921 cgtgtgtgga aaggccatac aattcattga cagaaggacg caggttaggt attcgctaga
4981 catgctagtt accgagatgt tcagggaata taaccacagg catagtgtgg gggcgacgct
5041 tgaagcgctg ttccaaggac cacctgtgta tagagagatt aaaattagtg tcgcaccaga
5101 gacgccacca ccgcccgcca ttacggacct actcaagtca gtagatagcg aagctgtgag
5161 ggagtactgt aaagagagag gatggttggt tcctgaggtt agctccactc tccaaattga
5221 gaaacacatc agccgggcct tcatctgttt gcaggcactg accacatttg tgtctgtagc
5281 tggtatcatt tacataatat acaagctctt tgcgggtttt caaggtgcat atacgggaat
5341 gcccaaccag aagcccaagg tacccaccct aaggcaagca aaagtacagg gccctgcgtt
5401 tgaattcgct gttgcgatga tgaagaggaa ttcaagcaca gtgaagactg agtatggcga
5461 attcaccatg ttgggcattt acgataggtg ggccgtcttg ccacgtcatg ctaaacctgg
5521 accaaccatt ctgatgaatg accaggaagt gggtgtgttg gacgccaaag agttggtaga
5581 taaggatggc acaaatctag aactaacact actcaaactg aacaggaacg agaagtttag
5641 ggacatcagg gggtttttgg ccaaggagga ggtggaagtc aatgaggctg tgcttgcaat
5701 taacaccagc aagttcccta acatgtatat cccagtggga caagtcacag attatggttt
5761 cctgaatcta ggcggcacac ctacaaagag aatgcttatg tacaacttcc ccacaagggc
5821 tggccagtgc ggtggggtgc tcatgtccac cggtaaagtc ctggggatcc acgttggggg
5881 aaatggtcac caaggttttt cagctgcact ccttaagcac tactttaatg atgaacaagg
5941 ggaaatcgag ttcatcgaga actcaaagga agcaggattc ccagtcatca acacacctag
6001 taagaccaaa ctagagccga gcgtcttcca ccaggttttt gagggcaaca aagagccagc
6061 ggtcctcagg aatggtgacc cgcgcctcaa agccaacttt gaggaggcca tattttccaa
6121 atacatcgga aatgtcaaca cacacgtgga tgagtacatg ctggaagctg tcgaccatta
6181 cgctgggcaa ttagctaccc tagacatcag cactgaacca atgaagttgg aagatgccgt
6241 gtacggaact gaaggtcttg aagcccttga cttaacaacc agtgcaggct acccctatgt
6301 cgcactgggc atcaagaaga gagacatcct atcaaagaaa accaaggact tgactaagct
6361 aaaagaatgc atggataagt atggtctgaa cttaccaatg gtgacttatg tgaaagatga
6421 gctcagatcc gcagagaaag tagcaaaggg aaaatctagg ctgattgaag catctagtct
6481 gaatgattca gtggcaatga gacaaacatt tggcaacctg tacaaaactt ttcacctgaa
6541 cccaggggtt gtgactggta gtgcagttgg gtgtgaccca gacctctttt ggagcaaaat
6601 accagtgatg ctggatggac atctcatagc atttgattac tctgggtatg atgctagctt
6661 aagtcctgtc tggtttgctt gtttaaaaat gctacttgaa aagcttggat atacacacaa
6721 agagacaaac tatattgatt acttatgcaa ctcccaccac ctgtacagag ataagcatta
6781 ctttgtgagg ggtggcatgc cttcagggtg ttctggcacc agtatcttta acacaatgat
6841 caacaacatc ataatcagga cactaatgct gaaagtgtac aagggaattg acttggacca
6901 gttcaggatg atcgcatatg gagatgatgt aattgcatca tatccatggc ccatagatgc
6961 atccttactc gctgaggctg gtaaggatta cgggctgata atgacgccag cagataaggg
7021 agagtgcttt aatgaagtca cttggaccaa cgtcactttc ctaaagaggt attttagagc
7081 agatgaacaa tacccctttt tagtgcaccc tgttatgccc atgaaagaca tacatgagtc
7141 aatcaggtgg accaaagatc caaagaatac ccaagatcat gtgcgctcac tgtgtctatt
7201 ggcatggcac aacggagagc acgaatatga ggagttcatt cgtagaatta gaagcgtccc
7261 agtcgggcgt tgcttgaccc tccctgcgtt ttcaacccta cgcaggaaat ggttggactc
7321 tttctaaatt ggagacaatt taaaacaatt tgaattggct tgaccctact gtactaaccg
7381 aactagataa cggtgcagta ggggtaaatt ctccgcattc ggtgcgg
//
