LOCUS AY593805 8142 bp RNA linear VRL 28-APR-2005
DEFINITION Foot-and-mouth disease virus C1 isolate c1ober iso88, complete
genome.
ACCESSION AY593805
VERSION AY593805.1
KEYWORDS .
SOURCE Foot-and-mouth disease virus C1
ORGANISM Foot-and-mouth disease virus C1
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Picornaviridae; Caphthovirinae; Aphthovirus;
Foot-and-mouth disease virus.
REFERENCE 1 (bases 1 to 8142)
AUTHORS Carrillo,C., Tulman,E.R., Delhon,G., Lu,Z., Carreno,A.,
Vagnozzi,A., Kutish,G.F. and Rock,D.L.
TITLE Comparative genomics of foot-and-mouth disease virus
JOURNAL J. Virol. 79 (10), 6487-6504 (2005)
PUBMED 15858032
REFERENCE 2 (bases 1 to 8142)
AUTHORS Carrillo,C., Lu,Z., Carreno,A., Tulman,E., Vagnozzi,A., Delhon,G.,
Kutish,G.F. and Rock,D.L.
TITLE Direct Submission
JOURNAL Submitted (07-APR-2004) African Swine Fever Research, Plum Island
Animal Disease Center, U.S. Dept. Agriculture, Agricultural
Research Service, P.O. Box 848, Greenport, NY 11944-0848, USA
FEATURES Location/Qualifiers
source 1..8142
/organism="Foot-and-mouth disease virus C1"
/mol_type="genomic RNA"
/strain="C1 Oberbayern"
/serotype="C"
/isolate="c1ober iso88"
/db_xref="taxon:12121"
/country="Germany"
/note="Plum Island Animal Disease Center Virus Collection,
isolated 1960"
CDS 1051..8034
/codon_start=1
/product="polyprotein"
/protein_id="AAT01748.1"
/translation="MNTTDCFIAVVNAIREIRALFLPRTTGKMEFTLHDGEKKVFYSR
PNNHDNCWLNTILQLFRYVDEPFFDWVYNSPENLTLEAIKQLEELTGLELREGGPPAL
VIWNIKHLLHTGIGTASRPSEVCMVDGTDMCLADFHAGIFMKGQEHAVFACVTSNGWY
AIDDEDFYPWTPDPSDVLVFVPYDQEPLNEGWKANVQRKLKGAGQSSPATGSQNQSGN
TGSIINNYYMQQYQNSMDTQLGDNAISGGSNEGSTDTTSTHTTNTQNNDWFSKLASSA
FSGLFGALLADKKTEETTLLEDRILTTRNGHTTSTTQSSVGVTFGYATAEDSTSGPNT
SGLETRVHQAERFFKMALFDWVPSQNFGHMHKVVLPHEPKGVYGGLVKSYAYMRNGWD
VEVTAVGNQFNGGCLLVALVPEMGDISDREKYQLTLYPHQFINPRTNMTAHITVPYVG
VNRYDQYKQHRPWTLVVMVVAPLTTNTAGAQQIKVYANIAPTNVHVAGELPSKEGIFP
VACSDGYGNMVTTDPKTADPAYGKVYNPPRTALPGRFTNYLDVAEACPTFLMFENVPY
VSTRTDGQRLLAKFDVSLAAKHMSNTYLAGLAQYYTQYTGTINLHFMFTGPTDAKARY
MVAYVPPGMDAPDNPEEAAHCIHAEWDTGLNSKFTFSIPYISAADYAYTASHEAETTC
VQGWVCVYQITHGKADADALVVSASAGKDFELRLPVDARQQTTATGESADPVTTTVEN
YGGETQVQRRHHTDVAFVLDRFVKVTVSGNQHTLDVMQAHKDNIVGALLRAATYYFSD
LEIAVTHTGKLTWVPNGAPVSALDNTTNPTAYHKGPLTRLALPYTAPHRVLATAYTGT
TTYTASTRGDSAHLTATRARHLPTSFNFGAVKAETITELLVRMKRAELYCPRPILPIQ
PTGDRHKQPLVAPAKQLLNFDLLKLAGDVESNPGPFFFSDVRSNFSKLVETINQMQED
MSTKHGPDFNRLVSAFEELASGVKAIRTGLDEAKPWYKLIKLLSRLSCMAAVAARSKD
PVLVAIMLADTGLEILDSTFVVKKISDSLSSLFHVPAPAFSFGAPILLAGLVKVASSF
FRSTPEDLERAEKQLKARDINDIFAILKNGEWLVKLILAIRDWIKAWIASEEKFVTMT
DLVPGILEKQRDLNDPSKYKDAKEWLDNTRQACLKSGNVHIANLCKVVAPAPSKSRPE
PVVVCLRGKSGQGKSFLANVLAQAISTHLTGRTDSVWYCPPDPDHFDGYNQQTVVVMD
DLGQNPDGKDFKYFAQMVSTTGFIPPMASLEDKGKPFSSKVIIATTNLYSGFTPKTMV
CPDALNRRFHFDIDVSAKDGYKINNKLDIIKALEDTHTNPVAMFQYDCALLNGMAVEM
KRLQQDMFKPQPPLQNVYQLVQEVIERVELHEKVSSHPIFKQISIPSQKSVLYFLIEK
GQHEAAIEFFEGMVHDSIKEELRPLIQQTSFVKRAFKRLKENFEIVALCLTLLANIVI
MIRETHKRQKMVDDAVNEYIEKANITTDDKTLDEAEKNPLETSGASTVGFRERTLPGQ
KARDDVNSEPAQPTEEQPQAEGPYAGPLERQRPLKVRAKLPQQEGPYAGPMERQKPLK
VKARAPVVKEGPYEGPVKKPVALKVKAKNLIVTESGAPPTDLQKMVMGNTKPVELILD
GKTVAICCATGVFGTAYLVPRHLFAEKYDKIMLDGRALTDSDYRVFEFEIKVKGQDML
SDAALMVLHRGNRVRDITKHFRDVARMKKGTPVVGVINNADVGRLIFSGEALTYKDIV
VCMDGDTMPGLFAYKAATKAGYCGGAVLAKDGADTFIVGTHSAGGNGVGYCSCVSRSM
LLKMKAHIDPEPHHEGLIVDTRDVEERVHVMRKTKLAPTVAHGVFNPEFGPAALSNKD
PRLNEGVVLDEVIFSKHKGDTKMSEEDKALFRRCAADYASRLHSVLGTANAPLSIYEA
IKGVDGLDAMEPDTAPGLPWALQGKRRGALIDFENGTVGPEVEAALKLMEKREYKFAC
QTFLKDEIRPMEKVRAGKTRIVDVLPVEHILYTRMMIGRFCAQMHSNNGPQIGSAVGC
NPDVDWQRFGTHFAQYRNVWDVDYSAFDANHCSDAMNIMFEEVFRTEFGFHPNAEWIL
KTLVNTEHAYENKRITVEGGMPSGCSATSIINTILNNIYVLYALRRHYEGVELDTYTM
ISYGDDIVVASDYDLDFEALKPHFKSLGQTITPADKSDKGFVLGHSITDVTFLKRHFH
MDYGTGFYKPVMASKTLEAILSFARRGTIQEKLISVAGLAVHSGPDEYRRLFEPFQGL
FEIPSYRSLYLRWVNAVCGDA"
ORIGIN
1 ttgaaagggg gcgctagggt ctcaccccta gcatgccaac gacagtccct gcgttgcact
61 ccacacttac gttgtgcgta cgcggggccc gatggactat cgttcaccca cctacagctg
121 gactcacggc accgcgtggc cattttagct ggattgtgcg gacgaacacc gcttgcgctt
181 ctcgcgtgac cggttagtac tcttaccacc ttccgcctac ttggttgtta gcgctgtcct
241 gggcactcct gttgggggcc gttcgacgct ccacgggttc ccccgtgcgg caactacggt
301 gatggggccg tttcgcgcgg gctgatcgcc tggtttgctt cggctgtcac ccgaaacccg
361 cctttcaccc ccccccccct aagttttacc gtctgtcccg acgttaaagg gaggtaacca
421 taagcatact accgcctttc ccggcgttaa cgggatgcaa ccgtaagaca caccttcatc
481 cggaagtaaa acggctgcgt cacacagttt tgcccgtttt cacaagaaat gggacgtctg
541 cgcacgaaac gcgccgtcgc ttgaggaaga cttgtacaaa cacgatctaa gcaggtttcc
601 ccaactgaca caaaccgtgc aacttgaaac tccgcctggt ctttccaggt ctagaggggt
661 aacactttgt actgtgtttg gctccacgct cgatccactg gcgagtgtta gtaacagcac
721 tgttgcttcg tagcggagca tgacggccgt gggaactcct ccttggtaac aaggacccac
781 ggggccaaaa gccacgccca cacgggcccg tcatgtgtgc aaccccagca cggcaacttt
841 actgcgaaac ccactttaaa gtgacattga aactggtacc cacacactgg tgacaggcta
901 aggatgccct tcaggtaccc cgaggtaaca cgcgacactc gggatctgag aaggggactg
961 gggcttctat aaaagcgctc ggtttaaaaa gcttctatgc ctgaataggt gaccggaggc
1021 cggcaccttt cctttacaat taatgaccct atgaatacaa ctgactgttt tatcgctgtg
1081 gtaaacgcca tcagagagat aagagcactt ttcctaccac ggactacagg aaaaatggaa
1141 ttcacgctgc acgacggcga gaaaaaggtc ttttactcca gacccaacaa ccacgacaac
1201 tgctggttga acaccatcct tcagttgttc aggtacgtcg atgaaccttt cttcgactgg
1261 gtctacaatt cgcccgagaa cctcacgctt gaagccatca agcaactgga ggaactcaca
1321 gggttggagt tgcgcgaggg tggaccgccc gcccttgtga tttggaacat caagcacctg
1381 ctccacactg gcatcggtac cgcttcgcga cccagcgagg tgtgtatggt ggacggtacg
1441 gacatgtgtc ttgctgactt tcatgcaggc attttcatga aaggacagga acacgctgtc
1501 tttgcgtgtg tcacctccaa cgggtggtac gcgattgatg acgaggactt ctacccatgg
1561 acgccagacc cgtctgatgt cctggtattt gttccatacg atcaagagcc actcaatgaa
1621 ggatggaagg ccaacgttca gcgaaagctc aagggagctg ggcaatccag cccagcgacc
1681 ggttcgcaga accaatctgg caacactggc agcataatta acaactacta tatgcagcag
1741 taccaaaact ccatggacac acaactcggc gacaacgcca tcagtggagg ctccaatgaa
1801 ggctccacgg acacaacctc tacacacaca accaacaccc agaacaacga ctggttttcc
1861 aaacttgcca gttcagcctt cagcggtctt ttcggcgccc ttctcgctga taagaaaacg
1921 gaggaaacca ctctccttga agaccgcatt ctcactaccc gtaacgggca cacgacctcg
1981 acaacccagt cgagcgtcgg agtcacattc gggtatgcaa ctgctgaaga tagcacgtct
2041 ggacccaata catctggtct agagacgcgc gttcatcagg cagagaggtt tttcaaaatg
2101 gcactttttg attgggttcc ttcacaaaat tttggacaca tgcacaaggt tgttctgccc
2161 catgaaccaa aaggtgttta cgggggtctc gtcaagtcat acgcgtacat gcgcaatggc
2221 tgggacgtcg aggtgactgc tgttggaaac cagttcaacg gcggctgcct cctggtggcg
2281 ctcgtccccg agatgggcga catcagtgac agggaaaagt accaactaac cctttacccc
2341 caccagttca tcaacccacg caccaacatg acggcacaca tcactgtgcc ctacgtgggt
2401 gtcaacaggt atgaccagta caaacagcac aggccctgga ccctcgtggt catggttgtc
2461 gcgccactca ccacaaacac agcaggtgcc caacagatca aagtgtatgc caacatagcc
2521 ccaaccaacg tgcacgtggc aggtgagctc ccctccaagg aggggatctt ccccgttgcg
2581 tgttctgacg gttacggcaa catggtgaca actgacccga aaacggctga ccctgcctac
2641 gggaaggttt acaacccccc tcggactgct ctgccggggc ggttcacaaa ctacctggat
2701 gttgccgagg cttgtcccac cttcctgatg ttcgagaacg taccttacgt ctcaacacga
2761 actgacgggc aaaggctact ggccaagttc gacgtgtcgc tggcagcgaa acacatgtca
2821 aacacctact tggccggctt ggcccagtac tacacacagt acactgggac aatcaaccta
2881 cacttcatgt tcactgggcc gaccgacgcg aaagctcggt acatggtggc gtacgtgccc
2941 cctggcatgg acgcaccaga caacccagaa gaggctgccc actgcataca cgcagaatgg
3001 gacactggtc tgaactctaa gttcacattt tcaatcccgt acatctcggc cgctgactac
3061 gcgtacaccg cgtcccacga ggctgaaaca acatgtgtac aggggtgggt ctgtgtgtac
3121 caaatcactc acggcaaggc agacgccgac gcgctcgtcg tctccgcatc agcggggaaa
3181 gactttgagc tccggctacc tgtggacgct agacaacaaa ctacggccac tggtgaatct
3241 gctgaccccg tcaccactac cgttgagaac tacggaggag agactcaagt ccaacgtcgc
3301 caccacaccg acgttgcctt cgttcttgac cggtttgtga aggtcacagt gtcgggtaac
3361 caacacacac tcgacgtgat gcaggcacac aaagacaata tcgtgggcgc gcttcttcgc
3421 gcagccacgt actacttttc tgatttggaa atagcagtga cccacactgg gaagctcaca
3481 tgggtgccca acggtgcacc agtttctgca cttgacaaca caaccaatcc cactgcgtac
3541 cacaagggcc cgttgactcg actggctctc ccatacaccg cgccacaccg tgtgttggct
3601 acggcgtaca ctggcactac gacctacacc gccagtacac gcggggattc ggctcaccta
3661 acggcgacgc gtgctcggca tttgccgaca tcgttcaact ttggtgcagt taaagcagaa
3721 acaatcactg agttgctcgt gcgcatgaag cgtgctgaac tctattgtcc taggccgatt
3781 cttccgattc agccaacggg tgatagacac aagcaaccgc tcgtcgcacc tgcaaaacaa
3841 ctgctgaact ttgacctgct caagttggct ggagatgtgg agtccaaccc tgggcccttc
3901 ttcttctctg acgttaggtc aaacttttcc aaactggtgg agacaattaa ccagatgcag
3961 gaggacatgt ccacaaagca cggacctgac tttaaccggt tggtgtctgc ttttgaggaa
4021 ctggccagtg gagtgaaagc catcaggacc ggtctcgatg aggccaaacc ctggtacaag
4081 cttattaagc tcctgagccg cttgtcgtgc atggccgctg tagcagcacg gtcaaaggac
4141 ccagtccttg tggccatcat gctggctgac accggtctcg agattctgga cagcacgttt
4201 gtcgtgaaga agatctccga ctcgctctcc agtctctttc acgtgccggc ccccgccttc
4261 agcttcggag ccccgattct gttggccggg ttggtcaagg tcgcctcgag tttcttccgg
4321 tccacacccg aagaccttga gagagcagag aaacagctca aagcacgtga catcaacgac
4381 atcttcgcca ttctcaagaa cggcgagtgg ctggtcaagc tgatccttgc catccgcgac
4441 tggattaagg catggattgc ctcagaagag aagtttgtca ccatgacaga cctggtgcct
4501 ggcatccttg aaaaacagcg ggacctcaac gacccaagca agtacaagga tgccaaggaa
4561 tggctcgaca acacgcgcca agcgtgtttg aagagcggga acgtccatat tgccaacctt
4621 tgcaaagtgg tcgccccagc acccagcaag tcgagacccg agcccgtggt cgtttgcctc
4681 cgcggcaagt ctggccaggg caagagtttc cttgcgaacg tgcttgcaca agcaatctcc
4741 acccacctca ccggcagaac cgactctgtt tggtactgcc cgcctgaccc tgaccacttc
4801 gacggttaca accagcagac cgttgttgtg atggacgatt tgggccagaa ccctgacggc
4861 aaggacttca agtacttcgc ccaaatggtt tcaaccacgg ggttcatccc gcccatggca
4921 tcacttgagg acaaaggcaa acccttcagc agtaaggtca tcattgcaac caccaacctg
4981 tactcgggct tcaccccgaa gaccatggtg tgccctgatg ctctgaaccg gaggtttcac
5041 tttgacatcg acgtgagcgc caaggacggg tacaaaatca acaacaaatt ggacatcatc
5101 aaagcacttg aagacaccca caccaaccca gtggcaatgt ttcagtacga ctgtgccctt
5161 ctcaacggca tggctgttga aatgaagaga ttgcaacagg atatgttcaa gcctcaacca
5221 cccctccaga acgtgtacca acttgttcag gaggtgattg aacgggtcga gcttcacgag
5281 aaagtgtcaa gccacccaat tttcaagcag atctcaattc cttcccaaaa atctgtgttg
5341 tacttcctca ttgagaaagg ccaacacgag gcagcaattg aattctttga gggcatggta
5401 cacgactcca tcaaggagga actccggccc ctcatccaac aaacttcatt tgtgaaacgc
5461 gcttttaagc gcctgaaaga gaactttgag attgttgcac tgtgcctaac acttttggcc
5521 aacattgtca tcatgatccg cgagactcac aagagacaga agatggtgga tgatgcggtg
5581 aatgagtaca tcgagaaagc aaacatcacc accgatgaca agacacttga cgaggcggaa
5641 aagaaccctc tggaaaccag tggtgccagc accgttggct tcagagagag aactcttcca
5701 ggtcagaagg cgcgcgatga cgtgaactct gagcccgccc agccgactga agagcaaccg
5761 caagctgaag gaccctacgc cgggccactc gagcgtcaga gacctctgaa agtgagagcc
5821 aagctcccgc agcaagaggg accttacgcc ggcccgatgg agagacagaa accgctgaaa
5881 gtgaaagcaa gagccccggt cgttaaggaa ggaccttatg aaggaccggt gaagaagcct
5941 gtcgctttga aagtgaaagc taagaatttg attgtcactg agagtggtgc ccctccgact
6001 gacttgcaaa agatggtcat gggcaacacg aagcctgttg agctcatcct cgacgggaag
6061 acagtagcca tctgctgtgc tactggagtg ttcggcactg cctacctcgt gcctcgtcat
6121 cttttcgctg agaagtatga caagatcatg ttggacggca gggctttgac agacagtgac
6181 tacagagtgt ttgagtttga gattaaagta aaaggacagg acatgctctc agacgctgcg
6241 ctcatggtgc tccaccgtgg gaaccgcgtg agagacatca cgaaacactt tcgtgatgta
6301 gcaagaatga agaaaggtac ccccgtcgtt ggcgtgatta acaacgctga tgttgggaga
6361 ctgattttct ctggtgaggc ccttacctac aaagacattg tagtgtgcat ggatggagac
6421 accatgcccg gtctctttgc ctacaaagcc gctaccaagg ctggctactg tggaggagcc
6481 gttcttgcta aggacggagc tgacaccttc atcgttggca ctcactctgc tggaggcaat
6541 ggagttgggt actgctcatg cgtatccagg tccatgcttc tcaaaatgaa ggcacacatc
6601 gaccctgaac cgcaccacga ggggttgatc gttgatacca gagatgtgga agagcgcgtc
6661 catgtaatgc gcaaaaccaa gcttgcaccc accgtcgcac acggtgtgtt caatcctgag
6721 ttcgggcctg ccgccttgtc taataaggac ccacgtctga acgaaggtgt tgtcctcgat
6781 gaagtcatct tctccaagca caaaggagac acaaagatgt ctgaggagga caaagcgctg
6841 ttccgccgct gcgctgctga ctacgcgtca cgcctgcaca gtgtgctggg tacggcaaat
6901 gccccactga gcatttacga ggcaatcaag ggcgttgacg gactcgacgc catggagcca
6961 gacaccgcac ctggccttcc ctgggccctc caggggaaac gccgcggtgc actcatcgat
7021 ttcgagaacg gcacggtcgg acccgaggtt gaggctgcct tgaagctcat ggagaaaaga
7081 gaatacaagt ttgcttgcca gaccttcctg aaggacgaaa ttcgcccgat ggagaaagta
7141 cgtgccggca agactcgcat tgtcgacgtt ttgcctgttg aacacattct ttacaccagg
7201 atgatgattg gcagattttg tgcacaaatg cactcaaaca acggaccgca gattggctca
7261 gcggtcggtt gcaaccctga tgttgattgg cagagattcg gcacacactt cgcccaatac
7321 agaaacgtgt gggacgtgga ctattcggcc tttgatgcaa accactgcag cgatgctatg
7381 aacatcatgt ttgaggaggt gttccgcacg gagttcggct tccacccgaa tgctgagtgg
7441 atcctgaaga ctctcgtgaa cacggagcac gcctatgaga acaagcgcat cactgttgaa
7501 ggcgggatgc cgtctggttg ttccgcaaca agcatcatca acacaatttt gaataacatc
7561 tacgtgctct acgccttgcg tagacactat gagggggttg agctggacac ttacaccatg
7621 atctcctatg gagacgacat cgtggtggca agtgattatg atctggactt tgaggccctc
7681 aagcctcact tcaaatctct tggccaaacc attactccag ctgacaaaag cgacaaaggt
7741 tttgttcttg gtcactccat tactgacgtc actttcctca aaagacactt ccacatggat
7801 tatggcactg ggttttacaa acctgtgatg gcctcgaaga ccctcgaggc tatcctctcc
7861 tttgcacgcc gtgggaccat ccaggagaag ttgatctccg tggcaggact cgccgtccac
7921 tccggaccag acgagtaccg gcgtctcttt gagcccttcc agggcctctt tgagattcca
7981 agctacagat cactttacct gcgttgggtg aacgccgtgt gcggcgacgc ataatccccc
8041 aaacatcaca attggcacaa tgattttggg gcgcgcgacg ccgtgggagt gaaaagcccg
8101 aaaggacttt tcccacttcc ttaatccaaa aaaaaaaaaa aa
//
