LOCUS EF173423 7216 bp RNA linear VRL 15-JUL-2007
DEFINITION Human rhinovirus 37, complete genome.
ACCESSION EF173423
VERSION EF173423.1
KEYWORDS .
SOURCE rhinovirus B37
ORGANISM rhinovirus B37
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Picornaviridae; Ensavirinae; Enterovirus;
Rhinovirus B.
REFERENCE 1 (bases 1 to 7216)
AUTHORS Tapparel,C., Junier,T., Gerlach,D., Cordey,S., Van Belle,S.,
Perrin,L., Zdobnov,E.M. and Kaiser,L.
TITLE New complete genome sequences of human rhinoviruses shed light on
their phylogeny and genomic features
JOURNAL BMC Genomics 8 (1), 224 (2007)
PUBMED 17623054
REMARK Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 7216)
AUTHORS Tapparel,C., Junier,T., Gerlach,D., Frayard,S., Perrin,L.,
Zdobnov,E.M. and Kaiser,L.
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2006) Infectious Medicine, University Hospital of
Geneva, 24 Rue Micheli-Du-Crest, Geneva 1211, Switzerland
FEATURES Location/Qualifiers
source 1..7216
/organism="rhinovirus B37"
/mol_type="genomic RNA"
/db_xref="taxon:147680"
5'UTR 1..630
CDS 631..7167
/codon_start=1
/product="polyprotein"
/protein_id="ABO69379.1"
/translation="MGAQVSTQKSGSHENQNILTNGSNQTFTVINYYKDAASSSSASQ
SFSMDPSKFTEPVKDLMLKGAPALNSPNVEACGYSDRVQQITLGNSTITTQEAANAVV
CYAEWPEYLPDKDASDVNKTSKPDTSVCRFYTLESKTWKNSSKGWCWKLPDALKDMGV
FGQNMFFHSLGRSGYTIHVQCNATKFHSGCLLVVVIPEHQLASHEGSNVSVKYKFTHP
GENGIDLELPPEKDGPVKNPVYGMNGTLLGNLLIFPHQFINLRTNNTATIVVPYINSV
PIDSMTRHNNVSLMVIPIAPLVAPTGSPQTLPVTVTIAPMCTEFTGIRSKTIVPQGLP
TTTLPGSGQFLTTDDRQSPSALPSYEPTPRIHIPGKVENLLEIIQVDTLIPMNNLQGS
DEVSNYLIPLTANKQNGQIFGTKLFIGDGVFKTTLLGEIAQYYTHWSGSLRISLMYTG
PALSSAKLILAYTPPGAQGPTNRKDAMLGTHVVWDIGLQSTIVMTIPWTSGVQFRYTD
PDTYTSAGYLSCWYQTSLILPPNTAGQVYLLSFISACSDFKLRLMKDTQTISQTDALT
EGLGDELEEVIVEKTKQTLASISSGPKHTQSVPTLTANETGATMPTNPSDNVETRTTY
MHFNGSETDIESFLGRAACVHITEIENKNSTGSVNHKSDKLFNDWKINLSSLVQLRKK
LELFTYVRFDSEYTILATASQPSKSNYASNLVVQAMYVPPGAPNPKEWNDFTWQSASN
PSVFFKVGDTARFSVPFVGLASAYNCFYDGYSHDDENTPYGITVLNHMGSMAFRVVDE
HDAHTTLVKIRVYHRAKHVEAWIPRAPRALPYEAIGKTNYPKMITPVIKKRDNITTYG
LGSRYGGVFTSNVKIMNYHLMTPEDHLNLITPYVNRDLAIVYTGAHGAETIPHCNCTS
GVYYSRYYRKFYPIMCEKPTTIWIEGSSYYPSRYQSGVMKGVGPAEPGDCGGILRCVH
GPIGLLTAGGSGYVCFADIRQLDCIAEEQGLNDYITSLGRAFGVGFTDQISAKVTELQ
DVAKDFLTTKVLSKVVKMISALVIICRNHDDLVTVTATLALLGCDGSPWRFLKMYISK
HFQVPYIERQANDGWFRKFNDACNAAKGLEWIANKISKLIEWIKNKVLPQAKEKLEYC
SKLKQLDILERQITTMHVSNPTQEKREQLFNNVLWLEQMSQKFAPLYAAESKRIRDLK
NKIMNYMQFKNKQRTEPVCVLIHGTPGSGKSLTTSIVGRALAEHFNSAVYSLPPDPKH
FDGYQQQEVVIMDDLNQNPDGQDISMFCQMVSSVDFIPPMANLDNKGMLFTSNFVLAS
TNSNTLSPPTILNPEALARRFGFDLDICLHSTYTKNGKLNTTMSTSICKDCHQPSNFK
KCCPLVCGKAISLVDRATNIRYSVDQLVTAIINDYKNKIKITDSLEALFQGPVYRDLE
IDVCNKSPPECINDLLKSVDSEELREYCKKKNWIIPQVPTNIERAMNQASMIINTILM
FVSTLGIVYVIYKLFAQTQGPYSGNPSHNKLKPPSLRPVMVQGPNTEFALSLLRKNIV
TITTEKGEFTGLGIYDRVCVIPTHAQPGNSVLLNGQKIQIKDKYKLMDPDNINLELTV
LILDRNEKFRDIRNFISEDIEGMEATLVVHSNNFTNTILEVGPITMAGLINLSSTPTS
RMIRYDYPTKTGQCGGVLCTTGKIFGIHVGGNGRQGFSAQLRRQYFIEKQGQIVSRQK
VRELNIAPVNTPNKTKLHPSVFYNVFPGSKEPAVLSDNDPRLEVKLSDSLFSKYKGNV
EMKPTENMLVAVDHYAGQLMSLDIPTEELTLKEALYGVDGLEPIDVTTSAGYPYVSLG
IKKRDILNRETQETEKMKFYLDKYGIDLPLVTYIKDELRSTDKVRLGKSRLIEASSLN
DSVNMRMKLGNLYKAFHQNPGVITGSAVGCDPDTFWSIIPCLMDGHLMAFDYSNFDAS
LSPVWFECLEKVLIKLGFKHSSLIQSICHTHHIFKDEIYIVEGGMPSGCSGTSIFNSM
INNIIIRTLILDAYKGIDLDKLKILAYGDDLIVSYPYELNPEVLATLGKNYGLTITPP
DKTEKFSKITWDNLTFLKRYFRSDEQFPFLVHPVMPMQDIYESIRWTKDPRNTQDHVR
SLCMLAWHSGEREYNDFIQKIRTTDIGKCLNLPEYSVLRKRWLDLF"
3'UTR 7168..7216
ORIGIN
1 tttaaacagc ggatgggtat cccaccatcc gacccactgg gtgtagtact ctggtatttt
61 gtacctttgt acgcctgttg ttcctaatgt acccacccta aaacttccta cccaagtaac
121 gttagaagtt tcatcaacaa gtacaatagg aagcatcaca tccagtggtg ttttgtacaa
181 gcacttctgt ttccccggag cgaggtatag gctgtaccca ctgccgaaag cctttaaccg
241 ttatccgcca accaactacg taaaagctag tatcatcatg ttttaaaata ggcgttcgat
301 caggtggatc ccccctccac tagtttggtc gatgaggcta ggaactcccc acgggtgacc
361 gtgtcctagc ctgcgtggcg gccaacccag cttctgctgg gacgcctttt tatggacatg
421 gtgtgaagac tcgcatgtgc ttggttgtga ctcctccggc ccctgaatgc ggctaacctt
481 aaccccggag ccctgtgttg caatccagta acattagggt cgtaatgagc aatttcggga
541 cgggaccgac tactttgggt gtccgtgttt ctcatttttc ttattattgt cttatggtca
601 cagcatatat ataacgtata tactgtgatc atgggcgctc aagtgtcaac acaaaagagt
661 ggatctcacg aaaatcaaaa catactcacc aatggatcaa accagacctt tacggtcata
721 aattactaca aagatgcagc tagttcatcc tcggctagcc aatctttctc aatggaccca
781 tcaaaattta cagaaccagt taaagacttg atgttaaagg gagcacccgc attgaactca
841 ccaaatgttg aggcttgtgg ttatagtgat agagtccagc agattaccct aggtaattca
901 accataacaa cccaggaagc agccaatgca gttgtatgtt acgccgaatg gcctgaatac
961 ctaccagaca aagatgcaag tgatgttaat aaaacttcaa aaccagacac ttctgtatgt
1021 agattctaca cattagaaag taagacatgg aaaaacagtt caaaagggtg gtgttggaaa
1081 ttgccagacg cccttaaaga catgggagtt ttcggtcaga acatgttctt ccactccctt
1141 ggcagatctg gttacaccat acatgttcaa tgcaatgcaa ccaaatttca cagtggctgt
1201 ctccttgtag ttgttattcc agaacaccaa ctagcctctc atgaaggtag taatgtatca
1261 gtaaagtata aatttacaca cccaggggaa aatggtattg atttggaatt accaccagag
1321 aaagatggtc cagttaaaaa ccccgtttat ggtatgaatg gtaccttgtt aggcaattta
1381 ttgattttcc ctcaccaatt tattaatctc agaacaaata atacggctac aatagttgtg
1441 ccttacatta actcagtacc aatagattca atgacacgtc ataacaacgt gtctcttatg
1501 gtgatcccca tagcacctct tgtggctcca actggatcac cacaaacatt acctgtaaca
1561 gttacaatag cccctatgtg tactgagttt actggtatta ggtctaaaac cattgttcca
1621 cagggcttac caactaccac cctaccaggc tcaggacaat tccttactac ggatgataga
1681 caatcaccca gtgcattgcc cagctatgag ccaactccca gaatccatat cccaggtaaa
1741 gttgaaaatc tgttggaaat catacaagtg gataccttga ttcctatgaa taacttgcaa
1801 ggtagtgacg aggtaagtaa ctacttaata cctttaacag ctaacaagca gaatggtcaa
1861 atatttggaa caaaactgtt cattggagat ggtgtgttta aaaccacttt gctcggtgaa
1921 atagcacaat actacacaca ttggtctgga tcccttagaa tctccctaat gtacactggt
1981 ccagctttat ctagtgctaa actcatatta gcatacacac cacctggtgc acaagggcca
2041 acaaacagaa aggatgccat gcttgggaca catgttgtct gggatattgg attgcaatcc
2101 accattgtaa tgaccatacc ctggacatca ggagtacaat tcagatacac cgacccagat
2161 acatatacca gtgctggtta tctatcctgt tggtatcaaa catcactcat actcccaccc
2221 aacactgctg gacaggttta cctattgtca tttattagtg catgttctga tttcaaatta
2281 agactaatga aagacactca aactatttca caaactgatg ccttgactga aggtctgggt
2341 gatgaactgg aagaagttat tgttgagaaa acgaaacaga cactagcttc aatatcatca
2401 ggacctaagc atacccagag tgttcctaca ctgacagcca atgaaacagg cgccaccatg
2461 ccaaccaacc catcagataa tgtagaaact agaacaacat acatgcactt caatggttct
2521 gaaacggaca ttgaaagttt cttgggacgt gctgcctgtg tacatataac tgaaatagaa
2581 aataaaaatt caacaggaag tgtaaatcat aaatcagata aattatttaa tgattggaaa
2641 atcaatttat caagtttggt tcaacttagg aaaaaactgg agcttttcac atatgttaga
2701 tttgactctg agtataccat tctagcaact gcctcacagc cgtcaaaatc caactatgca
2761 agtaatctgg tggtccaagc aatgtatgtc cctccaggag caccaaatcc aaaggaatgg
2821 aatgatttta catggcagag tgcttctaat ccaagtgtat tctttaaggt aggtgacaca
2881 gctagattca gtgtaccctt tgtaggtctt gcttcagcat acaattgttt ttatgatgga
2941 tattcacatg atgatgagaa cacaccctat ggaataacag tcttgaatca catgggtagt
3001 atggctttca gagtggttga tgagcatgat gcacatacaa ccttggtgaa gatcagagtc
3061 tatcatagag caaaacatgt tgaagcatgg atacccagag cccctagagc actaccatat
3121 gaagcaatag gaaagacaaa ttatcctaag atgattactc cagtaattaa gaaaagagat
3181 aatataacaa cttacggatt agggtccagg tatggtggtg tgtttactag caacgttaag
3241 atcatgaact accacttgat gactccagaa gatcacttaa acttaatcac accttatgta
3301 aatagagatc tagcaattgt atacacaggt gcacatggtg cggaaaccat accacattgt
3361 aattgcacct ctggtgtgta ttattccaga tattacagga aattttaccc aataatgtgt
3421 gaaaaaccaa caaccatatg gattgaaggc agctcttatt atcctagtag atatcaatca
3481 ggtgtcatga aaggtgttgg acctgctgaa ccaggtgact gtggtggtat tctgaggtgt
3541 gtccatggcc caataggctt actaacagca ggagggagtg gatatgtttg ttttgcagac
3601 ataagacaat tagactgtat tgctgaagag cagggcttaa atgattacat caccagctta
3661 gggagagcct ttggtgttgg ctttactgac caaatatcag caaaagtaac agagttgcaa
3721 gatgtggcca aagacttttt aacaaccaaa gtgttatcta aggttgttaa gatgatatca
3781 gctcttgtga tcatttgcag aaatcatgat gatttagtaa cagtcactgc aactctagcc
3841 cttttgggtt gtgatggttc tccatggaga ttcttgaaaa tgtatatatc caagcacttt
3901 caggtaccat atattgaaag acaagccaat gatggttggt tcagaaagtt taatgatgct
3961 tgcaacgcag ccaaaggttt agaatggatt gccaacaaga tatcaaagct gattgagtgg
4021 atcaaaaaca aagtcctacc acaagccaag gaaaaacttg agtactgcag taaattaaaa
4081 caattggaca tcctagaaag acaaataacc acaatgcatg tatcaaatcc cacccaggag
4141 aagagagaac agttgttcaa caacgtatta tggctggaac aaatgtcaca aaaatttgcc
4201 ccgctatacg ctgctgaatc aaaaagaatc agggatttga aaaataaaat tatgaattac
4261 atgcagttta aaaataaaca gaggactgaa ccagtgtgcg tgttaataca cggaacacca
4321 ggctctggca agtccctgac cacatcaatt gttggtcgtg cactagcaga acactttaat
4381 tcagcggttt attccctacc acctgaccca aagcactttg atggttacca acaacaagaa
4441 gttgttataa tggatgattt aaatcagaac ccagatggcc aagacattag tatgttttgc
4501 caaatggtct cttcagttga tttcatacct ccaatggcca atttggacaa caaagggatg
4561 ctgtttacca gcaattttgt cttggcctct acaaactcca acactctaag tccccctaca
4621 attcttaatc cagaggcttt agctagaaga tttggatttg atttggatat ttgcttacat
4681 agtacttaca ccaaaaatgg aaaactgaat accacaatgt caacaagtat atgtaaagat
4741 tgtcatcaac catcaaattt taaaaagtgt tgcccactgg tgtgtggcaa agccattagt
4801 ttggtggata gggctaccaa cattagatat agtgtagacc agcttgttac agcaattatt
4861 aatgattaca aaaacaagat aaaaataaca gattcacttg aggcgttatt tcaaggacca
4921 gtgtatagag atttagagat agatgtttgc aacaaatcac cccctgaatg cataaatgac
4981 ctcctgaaat cagtagactc agaagagctc agagagtatt gcaagaaaaa gaactggatt
5041 ataccacaag tacctaccaa tatagaaagg gctatgaacc aagccagtat gatcattaat
5101 acaatattga tgtttgttag cacattgggt atagtgtatg ttatttataa attgtttgcc
5161 caaactcaag gtccttactc aggcaatcct tctcacaaca agttgaaacc ccccagctta
5221 cgaccagtta tggtacaggg ccccaacaca gaatttgcac tgtccctatt gagaaagaat
5281 atagttacca tcacaactga aaaaggagag tttacaggtc taggcatcta tgaccgcgtg
5341 tgtgtcatac ccacacatgc acaaccaggc aacagtgttt tacttaatgg acaaaagata
5401 cagattaagg ataaatacaa attgatggat ccagacaaca ttaatttgga attgaccgta
5461 ttgattcttg atagaaatga aaagttcagg gatattagaa atttcatatc agaagacatt
5521 gaaggcatgg aagccaccct agtagtgcat tccaacaatt tcaccaatac catacttgag
5581 gttgggccaa taactatggc aggtcttatt aacttaagta gcacccccac aagcagaatg
5641 attcgatacg attacccaac taaaactgga caatgtggag gcgtgctctg cacaactgga
5701 aaaatttttg gaattcatgt tggaggcaat ggtagacaag ggttctcagc acaattgagg
5761 aggcaatatt tcattgaaaa acaggggcaa atagtttcca ggcaaaaagt tagggaacta
5821 aacattgcac cagtaaacac cccaaacaaa accaaactac accccagtgt tttttacaat
5881 gttttccctg gtagtaaaga gcctgctgtt ctcagtgata atgaccctag acttgaagtc
5941 aagctttcag actctctgtt ttcaaaatac aaaggtaatg ttgaaatgaa acctacagaa
6001 aacatgttag tggctgtaga tcattacgct ggtcaattga tgtcactgga cattcccact
6061 gaagaattaa cactcaaaga ggcactctac ggagtggatg ggttagaacc aatagatgtg
6121 acaacaagtg ctggttaccc ttatgttagt ttaggaatca aaaagagaga catcttaaac
6181 cgggaaacac aagaaacaga gaagatgaaa ttctacttag ataagtatgg aatagattta
6241 cctttagtta cctatataaa agatgaattg agaagcactg acaaggtgcg attgggcaag
6301 agtagactta ttgaagcctc aagcttgaat gattcagtca acatgagaat gaaattggga
6361 aatctctata aagcattcca ccagaaccca ggggtaatca ctggatctgc agtgggatgt
6421 gatccagaca cattctggtc tatcatccca tgtcttatgg atggacattt aatggcattt
6481 gactactcaa attttgatgc ttccctttca ccagtatggt ttgaatgttt agaaaaagtt
6541 ttaattaagt taggttttaa acactcctcc ttaatacaat caatctgtca cacccatcac
6601 atatttaaag atgaaattta cattgttgaa gggggaatgc catcaggctg ttctggtact
6661 agtatattca attccatgat taataatata attatcagaa cactcattct ggatgcatac
6721 aaaggaatag accttgacaa actcaaaatt ttagcttatg gagatgattt gattgtttct
6781 tatccatatg aactcaatcc agaagtgtta gcaacccttg gtaaaaacta tggtttaaca
6841 ataactcctc cagataaaac agagaaattt tccaagataa catgggacaa tttaacattt
6901 ctaaaaagat actttagatc tgatgaacag tttccctttt tagttcaccc agttatgcca
6961 atgcaagata tttatgaatc aatcagatgg accaaagatc ccaggaatac acaggatcat
7021 gtcaggtctt tatgcatgtt ggcatggcac tcaggagaaa gggaatacaa tgactttatc
7081 caaaagatta ggacaacaga catcggcaaa tgtttaaact tacctgagta cagtgttctt
7141 agaaaacgct ggttggactt gttctaaatt acttacaaat atagacatct agttttattt
7201 agaaatagaa gtttat
//
