LOCUS EU410347 7401 bp DNA circular VRL 24-SEP-2008
DEFINITION Human papillomavirus FA75/KI88-03, complete genome.
ACCESSION EU410347
VERSION EU410347.1
KEYWORDS .
SOURCE Human papillomavirus FA75/KI88-03
ORGANISM Human papillomavirus FA75/KI88-03
Viruses; Monodnaviria; Shotokuvirae; Cossaviricota;
Papovaviricetes; Zurhausenvirales; Papillomaviridae;
Firstpapillomavirinae; Betapapillomavirus; Betapapillomavirus 2.
REFERENCE 1 (bases 1 to 7401)
AUTHORS Vasiljevic,N., Hazard,K., Dillner,J. and Forslund,O.
TITLE Four novel human betapapillomaviruses of species 2 preferentially
found in actinic keratosis
JOURNAL J. Gen. Virol. 89 (PT 10), 2467-2474 (2008)
PUBMED 18796715
REFERENCE 2 (bases 1 to 7401)
AUTHORS Vasiljevic,N., Hazard,K., Dillner,J. and Forslund,O.
TITLE Direct Submission
JOURNAL Submitted (17-JAN-2008) Department of Medical Microbiology, Lunds
University, Institution of Laboratory Medicine, Clinical
Microbiology, Entrance 78, Malmoe 20502, Sweden
FEATURES Location/Qualifiers
source 1..7401
/organism="Human papillomavirus FA75/KI88-03"
/mol_type="genomic DNA"
/isolate="FA75[KI88-03]"
/db_xref="taxon:563190"
gene 162..578
/gene="E6"
CDS 162..578
/gene="E6"
/codon_start=1
/product="E6 protein"
/protein_id="ACC78256.1"
/translation="MERPRTVQVLSRHLEIPIEDLLVPCKFCERFLTYIELLQFDYKQ
LQLIWIEDLVYALCSSCAYASAAFEYKNYLEGTVKGREIEQVTQQSVGFITIRCIYCL
KHLDLLEKLDNCARHQQFYKVRGNWKGLCRHCWSIE"
gene 575..889
/gene="E7"
CDS 575..889
/gene="E7"
/codon_start=1
/product="E7 protein"
/protein_id="ACC78257.1"
/translation="MIGKEVTIPDIVLELQELVQPIDLHCYEELPELPDVPSEDSEEE
QVERIPYKIVAPCGGCGARLRLFVIATFFGIRTQQELLIQEVQLVCPQCREVIRNGGQ
GP"
gene 870..2702
/gene="E1"
CDS 870..2702
/gene="E1"
/codon_start=1
/product="E1 protein"
/protein_id="ACC78258.1"
/translation="MADKDHKGIDAKEGCSDWFLVEAECSDTSDLENDLENLFNEGAD
SDISNLIDDGDIEQGNSRELLCQQEAEESEQQTQLLKRKYLSPKEKEILQLSPQLESI
SLSPHHKSKKRLFVEQDSGLELSLNEVEDLSEEVEVPAITPAPAAQGGEGEGNLHYKA
LLKCSNAKATLLSKFKDAFGVSFNELTRHYQSNKTCCRDRVVSIYAVKDDLLEGSKHL
LQKHCSYIWMHVLQPMSLFLLCFNAGKSRETVFRLLSSILQVNEIQTLSEPPKWRSVI
AALYWYKGSMNPNIYTFGTYPDWIVTQTMISHQSLEATQFSLSDMIQWAFDNDYIDDA
DIAYNYAKLSDTNSNAKAFLDSNSQAKYVRECALMVKHYKRGQMREMSISSWIHTRLL
SVEGEGHWSHIVKFIRYQNLNFIMFLDKFRTFLQNTPKRNCILFHGPPDSGKSMFTMS
LIRVLKGKVLSFANSRSHFWLQPLSDAKIALLDDATYECWNYFDTFLRNGIDGNPVSL
DIKHKAPLQIQFPPLMITSNIDINKEDRYRYLQSRIMSFEFPNKFPFDSNNKPQFLLT
DQSWKSFFERLWTQLELSDQEDEGEDGNSQRTFQCTAREVNGHL"
gene 2644..3984
/gene="E2"
CDS 2644..3984
/gene="E2"
/codon_start=1
/product="E2 protein"
/protein_id="ACC78260.1"
/translation="METLSARFNALQEKLMDIYESGVETLEAQIEHWQLLRQEQVLLN
YARRNGVMRLGYQPVPSLATSETKAKDAIRMVILLQSLQTSEYADEPWNLVQTSLETV
RSPPENCFKKGPKNIEVIFDGNPENLMIYTVWTWIYYQNSDDKWQKVEGAVDYEGAYY
TEGKHKHYYLRFEADANRFSTTGLWEVHVNQDTVFTPVTSSSPPSGSRVSLLPSDTTS
LQPSSSVSTTQKRYARTGSSPTATARRQRKRERQEGDGEGTQATSRQRVRSRSRRSSR
GRRQETSVKRGKGRGGGSRGRREPTQRDTSSRGGRSRRRPQTRSRSRSRGSSNERGLL
PSEVGRSVQSVGSKHLGRLERLLEEAADPPVILFRGEANQLKCYRYRVHKRHKGGYKY
VSSTWSWITEHNNDRVGRARMLVLFSSTEQREAFLDTMKLPQGVDWSYGNLDNF"
gene 3107..3739
/gene="E4"
CDS 3107..3739
/gene="E4"
/codon_start=1
/product="E4 protein"
/protein_id="ACC78259.1"
/translation="MRVLTIQRENISTTTLDLKQMLTDLALLDCGKCMLTKILCLLLS
LALRRHLEAGYPFCPPTPHPSSPLPASPPHKNDTHEPDLALQPPPGGRGKEKDKKETE
KERRRHRDNVSDQDQDAPAEGGGKKPQSNEGKGEEEGHEGEENPPNETPPPGEGEVEG
GPKHGPGPDQEGLLMSVASCLQKWEDQYNQLVQNILVDLSDYWKRLQIPQ"
gene 4047..5609
/gene="L2"
CDS 4047..5609
/gene="L2"
/codon_start=1
/product="L2 protein"
/protein_id="ACC78261.1"
/translation="MARARRTKRASVTDIYRGCKAAGTCPPDVVNKVEQSTIADKILK
YGSAAVFFGGLGISTGRGTGGTTGYVPLGEGPGVRVGGAPTVVRPGVIPEVIGPTELI
PIDTVTPIDPTAPSVVTLTDSSAVDLLPGEIETIAEVHPVPVPSAPEIDTPVVTGGRN
SSAVLEVADPSPPTRTRVSRTQYHNPSFQIISESTPIAGESSLSDHILVFENTGGQAI
GGTREEIELQSLPSRYSFEIEEATPTRQTSTPIQRGRQAVSALRRALYNRRLTQQIAV
EDPLFLSKPSKLVKFQFDNPVFEEDITQIFERDIEQVEEPPDRQFLDVAKLGRPTYSE
TPQGYVRVSRLGRRASLRTRSGTQVGAQVHFYRDLSTINTEEPIELQLLGEHSGDSTI
VQGPVESTLIDVNINETPSLLETSEFNSEDLLLDDAVQDFSGSQLVFGTSRRSTSSVT
VPRFSSPRETSLYIQDIEGYNVAYPESREVPEIIYPQPDIPAVVIHIADASGDFYLHP
SLQKRKRKRAYL"
gene 5620..7143
/gene="L1"
CDS 5620..7143
/gene="L1"
/note="start site determined by comparison to other HPV
sequences"
/codon_start=1
/product="L1 protein"
/protein_id="ACC78262.1"
/translation="MSLWLPASGKVYLPPSTPVAKVLSTDEYVERTNIFYHATSDRLL
TVGHPYFDVTNSDGSKIEVPKVSGNQFRAFRMLFPDPNRFALADMSIYNPEKERLVWA
CKGIEISRGQPLGVGTCGHPLFNKVKDTENSNSYQTGSTDDRQNTSFDPKQVQMFIIG
CTPCLGEYWDKAEPCENAGDQQGKCPPIELKNSVIQDGDMMDIGFGNINFKTLSLNRS
DVSLDLVDEIAKYPDFLTMANDVYGDSCFFFARREQCYARHYFTRGGNVGDATPDGAN
NQDHKFYLPPKSSQSQTLGNSIYFPTVSGSLVSSDAQLFNRPFWLQKAQGHNNGILWG
NQMFVTVADNTRNTNFTICVPSDNGAITEYDSSKFREFLRHVEEYQISVILQLCKVSL
QPDVLAQINAMNSGILEDWQLGFVPTPDNAVHDTYRFINSSATKCPDKVPAKDREDPF
AQYFFWRVDMTEKLSLDLDQYPLGRKFLFQAGLQNTRVKSLKRSRSVSRGTAKRRRT"
ORIGIN
1 aacggtaagt ttttatttgt ttgaaccgct gccggttgct atattactca tttatctgat
61 tgtggtttac aacaaccatt ccttaattaa atacatgtga ccgcttgcgt tagatgtaaa
121 cctataaaat tacttgaaga atattagaga cacatatact gatggagagg cctagaacag
181 tacaagttct gagtcggcat ttagaaatac caatagaaga tttattggta ccatgcaagt
241 tttgtgagcg ctttttaaca tatatagaac ttttgcaatt tgattacaaa caattgcaac
301 tcatttggat tgaagattta gtgtatgctc tttgctctag ttgtgcatat gcatctgctg
361 catttgaata caaaaattat ttagaaggca cagtcaaagg cagagaaata gagcaggtga
421 ctcaacagtc tgtaggcttt attactatca gatgcattta ttgtttaaag catctagacc
481 ttttagaaaa gttagacaat tgtgctaggc atcagcagtt ttataaggtg agaggtaatt
541 ggaagggatt gtgcagacat tgttggtcga tagaatgatt gggaaagaag ttactattcc
601 agatattgtt ctggaactgc aagagcttgt ccagcccatt gacctgcatt gctacgaaga
661 attaccagag cttccagatg ttcctagtga agattcagag gaggagcaag tagagcgcat
721 cccatacaag atagttgctc cttgtggtgg ttgtggcgct cgccttcgac tatttgtgat
781 tgctaccttc tttggaatcc gcacacagca agaactttta attcaagaag tgcaacttgt
841 gtgtcctcag tgccgagagg tcattcgcaa tggcggacaa ggaccataaa ggtattgatg
901 ctaaggaagg ctgtagtgat tggtttttag tagaagctga atgttcagat actagtgatc
961 tagaaaatga tttagaaaac ttatttaatg aaggggcaga ctcagatatt tctaatttaa
1021 ttgatgatgg ggacattgaa caggggaatt cccgcgaatt gctatgccag caagaagcag
1081 aggaaagcga gcaacagaca caattgctaa aacgaaagta cctcagtcct aaagagaaag
1141 agatcctgca gctcagtccg cagctggagt caatctccct gtcgccccat cataaatcta
1201 aaaaacggct gtttgtggag caagatagtg gactagagct ttcactaaat gaagttgaag
1261 atctttctga agaggtggag gtaccggcga ttactccagc gccggcagcg cagggtggtg
1321 agggagaggg aaacttgcat tataaagcgc tgttaaagtg cagcaatgca aaagcaacat
1381 tgttaagtaa atttaaggat gcgtttggag tgagttttaa tgagctcaca aggcactatc
1441 aaagtaataa gacatgttgt agggatcggg ttgttagtat ttatgcagtg aaagatgatc
1501 tgttagaagg gtctaagcat ttattacaaa agcattgttc atatatttgg atgcatgttt
1561 tacaaccaat gtcattattt ttactgtgtt ttaatgctgg gaaaagtaga gaaactgtat
1621 ttagattact atcttctatt ttgcaagtaa atgaaattca aacattgtct gaaccaccta
1681 agtggcgtag tgtaatagcg gcattgtatt ggtataaagg aagtatgaat ccaaatattt
1741 atacttttgg aacatatcct gattggatag tgacacaaac tatgattagc catcaatctt
1801 tggaggccac gcaattttct ttatctgaca tgatacagtg ggcatttgat aatgattata
1861 tagacgatgc agatatagct tacaactatg ctaaactgtc tgatacaaat agtaatgcaa
1921 aagcattttt agatagtaat agtcaagcaa agtatgttag agaatgtgct ttaatggtta
1981 aacattataa acgtgggcaa atgagggaaa tgtcaatatc aagttggatt catacacgcc
2041 ttttatcagt agaaggagaa ggtcattggt ctcatattgt aaaatttatc agatatcaaa
2101 acttaaattt tattatgttt ttagataagt ttaggacatt tttgcagaat acacctaaaa
2161 ggaattgcat tttatttcat gggcctcctg attcagggaa atctatgttt acaatgtctt
2221 taattcgtgt gttaaaagga aaagtgttat catttgctaa ttctagaagt catttttggt
2281 tgcaaccact gtcagatgct aaaatagcac tgctagacga tgctacatat gagtgttgga
2341 attattttga tacattctta agaaatggca ttgatggaaa cccagtcagt ctagatataa
2401 aacacaaagc tcctttgcaa atacaatttc cacctttaat gataacatct aatatagata
2461 ttaataaaga agatagatat aggtatttgc aaagtagaat catgtcattt gaatttccta
2521 ataaatttcc ttttgatagt aataataaac ctcaatttct tttaactgac caaagctgga
2581 aatctttttt tgaaaggctt tggacacaat tagagctcag tgatcaagaa gacgagggag
2641 aggatggaaa ctctcagcgc acgtttcaat gcactgcaag agaagttaat ggacatttat
2701 gaatcaggtg tagaaacgtt ggaagcacaa attgagcact ggcaattatt aagacaagag
2761 caggtgcttt taaattatgc aaggaggaat ggtgttatgc gcctaggata tcaacctgta
2821 ccaagtctag caacgtcaga gactaaagcc aaggatgcaa ttcgcatggt tatactttta
2881 caaagtttac aaacttctga gtatgctgat gaaccgtgga acttggtgca gactagcctt
2941 gaaactgtta gaagtcctcc tgaaaattgt tttaaaaagg gaccaaaaaa tattgaggtt
3001 atttttgatg gaaatcctga aaatcttatg atttatactg tatggacatg gatatattat
3061 caaaactcag atgataagtg gcaaaaggta gaaggtgctg tggactatga gggtgcttac
3121 tatacagagg gaaaacataa gcactactac cttagatttg aagcagatgc taacagattt
3181 agcactactg gactgtggga agtgcatgtt aaccaagata ctgtgtttac tcctgtcact
3241 agctcttcgc cgccatctgg aagcagggta tcccttctgc cctccgacac cacatccctc
3301 cagccctctt ccagcgtctc caccacacaa aaacgatacg cacgaaccgg atctagccct
3361 acagccaccg cccggcggca gaggaaaaga gaaagacaag aaggagacgg agaaggaacg
3421 caggcgacat cgagacaacg tgtcagatca agatcaagac gctccagcag agggaggagg
3481 caagaaacct cagtcaaacg agggaaaggg cgaggaggag ggtcacgagg gagaagagaa
3541 cccacccaac gagacacctc ctccagggga gggagaagta gaaggcggcc ccaaacacgg
3601 tccaggtcca gatcaagagg gtcttctaat gagcgtggcc tcttgccttc agaagtggga
3661 agatcagtac aatcagttgg ttcaaaacat cttggtagac ttgagcgatt attggaagag
3721 gctgcagatc ccccagtaat tctgtttcgt ggggaggcta atcagcttaa atgctatcgc
3781 tacagggtgc ataaaaggca taagggtggc tacaaatatg tcagtagtac ttggtcatgg
3841 atcacagaac ataacaatga cagagtggga cgcgctcgga tgcttgttct gttttcatca
3901 acagaacaaa gggaagcatt tctagacact atgaaattac ctcagggtgt tgattggtcc
3961 tatgggaatc ttgataattt ttaattaact aacccttttt actaattgca tgcttttaca
4021 ctaatatact aatctgctaa tctgctatgg ctcgtgcacg cagaacaaaa cgtgcttctg
4081 ttactgatat ttacaggggt tgcaaggctg caggtacttg ccctcctgat gttgtaaata
4141 aagttgaaca aagcacaata gcagataaaa ttttaaaata tggaagtgct gctgtgtttt
4201 ttggtgggtt gggaataagt acaggccgcg gtactggtgg cacaacagga tatgtacctc
4261 ttggagaagg ccctggggtg cgcgttggtg gtgcgcccac agtggtacgc cccggggtca
4321 tacctgaagt tattggtcca actgagttaa tacctattga tacagtcact ccaattgacc
4381 ctacagcacc ctctgtagtc accttaactg acagctctgc tgttgacctt ttacctggtg
4441 aaatagagac aattgcagaa gtgcatccag tcccagttcc aagtgcacca gaaattgaca
4501 ctcctgtggt cactggcggg cgaaattcat ctgctgtgtt agaggtggct gatcctagtc
4561 ctcccacacg tactagagta tctagaacac aataccataa cccatctttt caaataatat
4621 ctgagtctac accaatagct ggggagtctt cattatcaga tcatatattg gtgtttgaaa
4681 acacaggggg tcaagctata ggtggtacaa gagaagaaat tgaactacaa tcattacctt
4741 ccaggtatag ctttgaaata gaagaggcca ctcctactcg tcaaaccagc acacctattc
4801 aaagaggtag gcaagctgtt tctgctttac gtagggcctt gtacaatcga agattaactc
4861 aacagatagc tgtagaagac cctttatttt tatccaaacc atctaagcta gtaaaatttc
4921 agtttgataa tcctgtattt gaagaagata ttacccagat atttgaaagg gatatagaac
4981 aagttgaaga acctcctgac agacagtttc tggatgtagc aaaattaggt aggcctacat
5041 attctgaaac tcctcaaggc tatgttaggg taagtaggct agggcgacgc gcttccctaa
5101 ggactaggag tggtactcag gttggtgcac aggttcattt ctacagggac cttagtacaa
5161 ttaacactga ggagcccata gaattacaac ttttaggaga acattctggg gattctacaa
5221 ttgtacaagg gcctgttgaa agtacactta tagatgttaa tattaatgaa acacctagcc
5281 ttttggaaac ttcagaattt aattctgaag atttattact tgatgatgct gtgcaggact
5341 ttagtgggtc tcaattagtg tttggtacat ctaggaggtc aacttcatct gttactgtac
5401 ctagattcag ttctcctagg gaaacaagtt tatatattca agatattgaa ggttataatg
5461 tagcttatcc agagtcacga gaagtacctg aaataattta tccacagcct gatattccag
5521 ctgttgttat acatatagca gatgcttctg gggattttta tttacatccc agtttacaga
5581 aacgaaaacg caagcgagct tatttataat ttttttcaga tgtctctctg gcttcctgca
5641 agtggtaagg tatatttgcc accatcaact ccagtagcta aggtgttaag cactgatgaa
5701 tatgtagaaa gaactaacat attttatcac gcaactagtg atcgcctttt aacagtagga
5761 catccatatt ttgatgttac aaattctgat ggctccaaaa tagaagttcc caaagtgtca
5821 ggaaatcaat ttagggcctt tagaatgtta tttcctgatc caaatagatt tgcattagca
5881 gatatgtcca tatataaccc agaaaaggaa agattggttt gggcttgtaa aggaatagaa
5941 attagcagag gtcagccttt aggtgtaggt acatgtggtc atccattatt taataaagtg
6001 aaagatacag aaaatagcaa tagctatcag acagggtcca cagatgacag acaaaataca
6061 tcctttgatc ctaaacaagt tcaaatgttt attattggat gtacaccatg tttaggagaa
6121 tactgggata aagctgagcc atgtgaaaat gcaggagatc aacagggaaa atgtccacct
6181 atagaactga aaaattctgt gattcaagat ggcgatatga tggacattgg atttggaaat
6241 ataaatttta aaactctatc cctgaataga tcagatgtta gcttagattt agtagacgaa
6301 attgctaaat atccagattt tctaactatg gcaaatgatg tgtatggaga ctcatgtttc
6361 ttttttgcaa gaagggaaca gtgctatgca agacattatt ttaccagagg aggtaatgtt
6421 ggagacgcta ctccagatgg agcaaataat caagatcata aattttattt acctcctaag
6481 tcatcacaaa gtcaaacact aggaaattca atttactttc ctactgttag tggttctcta
6541 gtctcttcag atgctcagtt atttaatagg cctttttggt tacaaaaagc tcaaggccat
6601 aacaatggta tactatgggg aaatcaaatg tttgtcactg ttgctgataa cactagaaac
6661 actaacttta ccatttgtgt accttcagat aatggtgcta taactgagta tgattctagc
6721 aaatttagag aatttttaag gcacgtggaa gagtatcaaa tatctgtaat attacaactg
6781 tgtaaagtat cactgcaacc tgatgtgcta gcccagatca atgcaatgaa ttcaggtata
6841 ttagaagatt ggcagttagg atttgtacca actcctgaca atgcagtaca tgacacctat
6901 agatttataa attcctcagc cactaaatgt ccagataagg ttcctgcaaa agatagagag
6961 gatccatttg ctcaatattt cttttggaga gtagatatga ctgaaaaatt atcattagat
7021 ttagatcaat atcctttagg aagaaagttt ttgttccaag caggattaca gaacaccagg
7081 gtcaaatcat taaagcgtag cagatctgtt tctcggggta ctgcaaaacg acgacggaca
7141 taacgaccga aatcggtttg tatttaataa ataaatattc taaccaaaat ggtatgtgaa
7201 gcatttttta aaccgtcttc gtgactaaac cgaacaagtc aacaccagca accgcgcccg
7261 gtataatctg cttataaatc gcagccggta cttcacctta caaagacttg gcagtctgtc
7321 taggaacacc gcaggcgccc gccaagattc tattgaagat atcttggcag aacatcaatt
7381 tggcctcact tctacaccga t
//
