LOCUS FJ445130 7223 bp ss-RNA linear VRL 10-APR-2009
DEFINITION Human rhinovirus 42 strain ATCC VR-338, complete genome.
ACCESSION FJ445130
VERSION FJ445130.1
DBLINK BioProject: PRJNA32533
KEYWORDS .
SOURCE rhinovirus B42
ORGANISM rhinovirus B42
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Picornaviridae; Ensavirinae; Enterovirus;
Rhinovirus B.
REFERENCE 1 (bases 1 to 7223)
AUTHORS Palmenberg,A.C., Spiro,D., Kuzmickas,R., Wang,S., Djikeng,A.,
Rathe,J.A., Fraser-Liggett,C.M. and Liggett,S.B.
TITLE Sequencing and analyses of all known human rhinovirus genomes
reveal structure and evolution
JOURNAL Science 324 (5923), 55-59 (2009)
PUBMED 19213880
REFERENCE 2 (bases 1 to 7223)
AUTHORS Spiro,D., Kuzmickas,R., Palmenberg,A.C., Wang,S., Djikeng,A.,
Rathe,J.A., Overton,L., Tsitrin,T., Gallagher,T., Liu,J.,
Pushparaj,V., Tallon,L.J., Fraser-Liggett,C.M. and Liggett,S.B.
TITLE Direct Submission
JOURNAL Submitted (10-NOV-2008) University of Maryland School of Medicine,
20 Penn St, Baltimore, MD 21201, USA
FEATURES Location/Qualifiers
source 1..7223
/organism="rhinovirus B42"
/mol_type="genomic RNA"
/strain="ATCC VR-338"
/culture_collection="ATCC:VR-338"
/db_xref="taxon:147683"
/note="HRV42;
hrv-42"
CDS 633..7166
/codon_start=1
/product="polyprotein"
/protein_id="ACK37386.1"
/translation="MGAQVSTQKSGSHENQNILTNGSNQTFTVINYYKDAASSSSAGQ
SLSMDPSKFTEPVKDIMLKGAPALNSPNIEACGYSDRVEQITLGNSTITTQEAANSIV
AYGEWPSFLSDVDASDVNKTTKPDTSACRFYTLDSKTWSQSSKGWCWKLPDALKDMGI
FGQNMFFHSQGRTGYTIHVQCNATKFHSGCLLVVVIPEHQLASIEGGNVSVLYDKTHP
GEKGIDLNDEDPKGPMKDPLYMMDGTLIGNSLIFPHQFINLRTNNTATIVVPYINSVP
MDSMTRHNNLSLLVIPIVQIAATTGAAPSIPVTVTIAPMFLELSGIRSKAVIQGLPTV
LTPGSEQFLTTDDRQSPSAMPNYEPTPLIHIPGEVKNLLEIAQVDTLIPINNTETASG
LDMYRVPLTQNKQGEQVFGFKLYLGDGVLKTTLIGELCQYFTHWAGSLRLSFMYTGPA
LSSAKLLIAYTPPGAQGPIKRKEAMLGTHVIWDIGLQSTVVLNIPWTSGVQFRYTDPD
TYTSAGFISCWYQTSLVLPPQTQQTVYILGFISACPDFKLRLMKDTQSIHQETALTEG
LEDELMEVIVDKTQQTLASVKSGSKHTQKVPSLTANETGATLPTTPSDSVETRTTMMH
YTGSETTLENFLGRAACVHVVEIRNKRPTDGEEHKTQLLFNDWKINLSSLVQLRRKLE
MFTYVRFDSEYTIIATSSQPNDAKFSSNLTVQAMFIPPGAPNPSKWDDYTWQSATNPS
VFFNVGKSARFSVPYLGIASAYNCFYDGYSHDNLTTPYGINVLNHMGSMAFRVVNEHD
IHTTHVKIRVYHRAKHIRAWIPRAPRVLEYLHIGRTNYKQNPKNPIKTRDSISTYGLG
PRFGGVCTGNIKIMNYHLMSHEDTLNLVTPLPERDLAIVSTGAHGSETVPQCNCMSGV
YYSRYYNKFYPVICEKPTCLWIEGNNYYPSRYQQGVMRGVGPAEPGDCGGILRCIHGP
IGLLTAGGSGYVCFADIRALDMFKAEYQGISDYISNLGKAFGTGFTEHISEKVTELQN
MSLGYLNTKVLSKIVKIVSALVIICRNHDDLITVTATLALLGCDGSPWRYLKMYISKH
FCLPYIERQSNDLWFKKFNDMCNAAKGLEWIANKISKLIDWVKQKILPQARDKLDFCR
RLKQLDILERQIDSLHMNQVNDNDREVLFNNILWLEQMSQKFAPLYAVEAKRIKMLKN
KMTNFIQFRSKHRTEPVCVLIHGSPGSGKSLTTSLIGRAIADSCGSSVYSLPPDPKHF
DGYQQQAVVILDDLNQNPNGEDISTFCQMVSSVDFIPPMANLDNKGMLFTSNFVLAST
NSQTLNPPTVLNPEALARRFGFDLDMCLHTTYTKSGKLNAALASELCKDCHKPTNFKR
CCPLICGKALSLVDRRTNVRFSIDQLVTAIITEHANKTKISSSLEVLFQGPTYKDLHI
DVTTTPPPECIVDLLKSVDNEEVRQYCQEKRWLIPEIPTNVERAVNQATNLINTILMF
ITTLGIIYMIYKLFAQTQGPYSGLDNKSKLKPPTLRAVVTQGPNTEFALSLLRKNIVT
VTTDKGEFTGLGIHERILVIPTHAQPSEKVLINGFATNVKDKWKLVDPDNLNLEITVL
ELDRNEKFRDIRMFIADDPECNEASLVIHSNNFKDTILTVGATTLAGIINLSNTPTAR
MIRYDFPTRTGQCGGVLCSTGKIYGIHVGGNGKQGFSAQLKKQYFVQKQGQIITKRNV
RELSIKPINTPNTTKLHPSVFYNVFPGSKEPAVLHPADERLEVNFEESLFSKYKGNVK
MEITENMKVAIDHYAGQLLSLDIPTQELTLKEALYGTDGLEPIDLNTSAGYPYVSLGI
KKRSILNKETKDTTKMEECLSKYGIDLPLVTYIKDELRGKDKIRLGKSRLIEASSLND
SVNMRIKLGNLYKAFHKNPGILTGSAVGCDPDTFWSVIPCLLDGELIAFDYSNFDASL
SPVWFECLEQVLKKIGFQCSELIQQICTTHHIFKDQIYVVEGGMPSGCSGTSIFNSMI
NNIIIRTLILDVYKGIELDSLRIIAYGDDVIVSYPFPLDPEKIAQQGVIYGLTITPPD
KSPKFTKMDWNTVTFLKRQFKPDKEFPFLIHPVMPMSDIHESIRWTKDPKNTQDHIRS
LCMMAWHSGEDEYNKFVDGIRSTDIGKALLIPSYSVLRRRWLDLF"
mat_peptide 633..839
/product="1A"
/note="VP4"
mat_peptide 840..1619
/product="1B"
/note="VP2"
mat_peptide 1620..2327
/product="1C"
/note="VP3"
mat_peptide 2328..3191
/product="1D"
/note="VP1"
mat_peptide 3192..3632
/product="2A"
/note="P2-A"
mat_peptide 3633..3923
/product="2B"
/note="P2-B"
mat_peptide 3924..4913
/product="2C"
/note="P-2C"
mat_peptide 4914..5168
/product="3A"
/note="P3-A"
mat_peptide 5169..5237
/product="3B"
/note="VPg"
mat_peptide 5238..5783
/product="3C"
/note="P3-C"
mat_peptide 5784..7163
/product="3D"
/note="polymerase"
ORIGIN
1 ttaaaacagc gggtgggtat cccaccaccc gacccactgg gtgtggtaca ctggtacttt
61 gtacctttgt atgcctgttt gcatcccctt ccctttacct aacatccctc cccaagttat
121 attttgcggt aacgttagaa gaagtgaacy tagtgcaaca ggaagtatca ccaccagtga
181 tataacgcac aagcaattct tgttccccgg agctggatat agactgctaa cgtggttgaa
241 agtccttaac cgttatccgc cagttaactg cgaaaagact agtaacatca tgcacatttc
301 taggtgttcg atcaggtgaa aaccccattc actagtttgg tcgatgaggc tgagagtacc
361 ccacaggcga ctgtgtctca gcctgcgtgg cggccaaccc gacttatgtc gggacgccta
421 ttaatagaca tggtgtgaag atcctattgc gcttagctgt gagtcctccg gcccctgaat
481 gcggctaacc ttaaccccgg agtcttgtga tgtaagccaa catttgcaag gtcgtaatga
541 gtaattctgg gatgggaccg actactttgg gtgtccgtgt ttcctttatt cttatcattt
601 gtgtttcatg gttacaagca ttgtttgtaa tcatgggtgc acaggtgtca acacaaaaga
661 gtggttcaca tgaaaatcaa aacatactta caaatggatc aaatcagaca tttacagtta
721 taaattatta caaggatgca gctagttcat cctctgcagg acaatcactt tcaatggacc
781 cgagcaagtt tactgaacca gttaaagata tcatgttaaa aggagcacca gcactaaatt
841 caccaaacat agaggcatgt ggatatagtg acagagttga acaaataaca ttagggaatt
901 ctacgattac tacacaggag gcagcaaact caatcgtagc ctatggagaa tggccatcat
961 ttttatcaga tgttgatgct agtgatgtta acaaaactac taaaccagac acttcagcat
1021 gtaggtttta cactttggat agtaaaacat ggagtcagag ttcaaagggt tggtgctgga
1081 aactaccaga tgcgctcaaa gatatgggca tatttggtca aaatatgttt ttccactctc
1141 aaggcagaac cgggtatact attcatgttc aatgtaatgc aaccaaattt cacagtggtt
1201 gtctattagt tgtagtgata cctgaacacc aacttgcatc aattgaaggt ggtaatgtct
1261 cagttctgta tgacaagaca catccaggag agaaaggcat agaccttaat gatgaagatc
1321 caaaaggccc aatgaaagat cctctctaca tgatggatgg cacactaatt ggaaacagtc
1381 tcattttccc acaccagttt attaatttga gaactaataa tacagcaaca attgtggttc
1441 cttacattaa ctcagtacct atggactcca tgactagaca taacaacctc tctctgttag
1501 tcatccccat tgtgcaaatc gcagcaacaa ctggtgcagc cccctccata ccagtaactg
1561 taactattgc tccaatgttt ttagagttat ctggcatacg atcaaaagct gttatacaag
1621 gactgcccac agttttaaca ccaggttcag agcagttttt gactacagat gataggcaat
1681 cacctagtgc tatgcccaat tatgaaccaa caccattaat acacattcct ggagaagtta
1741 aaaacctatt ggaaattgca caagttgata ctttgattcc aataaataac acagagactg
1801 ccagtggatt ggatatgtac agagttccac tcacacaaaa caaacaggga gaacaggtat
1861 ttgggtttaa actctactta ggtgatggtg ttttaaaaac aacactaata ggtgagttgt
1921 gtcagtattt tacacattgg gcaggttcac tgcgcctatc ctttatgtac actggcccag
1981 cactctctag tgccaaatta ttaattgcct acacaccccc aggagcccaa ggtccaatca
2041 aacgcaaaga agcaatgcta ggtacacatg taatttggga cattggactg caatcaacag
2101 tagtcttgaa tataccttgg acttcaggag tacaatttag atatacagat ccagacacat
2161 acactagcgc agggttcatt tcttgttggt atcaaacttc cttagtgtta cccccacaaa
2221 cacaacaaac tgtatatata ctaggtttca ttagtgcatg tcctgatttc aaacttagac
2281 tcatgaaaga tacacagtca atacatcaag aaacagcatt gactgagggg ttggaagatg
2341 aattgatgga agtcattgtt gacaaaacgc agcaaacact ggcttcagtc aagagtggat
2401 ctaagcatac ccaaaaagta ccttcactta ctgctaatga aaccggagca acgctgccaa
2461 caacaccatc cgacagcgtg gaaacccgga caactatgat gcactataca gggtcagaaa
2521 caacactgga aaattttctg ggtagagcag catgtgtaca tgttgttgaa atcagaaata
2581 aacgacccac agatggtgaa gaacacaaaa cacagctctt gtttaatgat tggaaaataa
2641 atttgtccag cttagtacaa cttagaagaa aacttgaaat gtttacgtat gttagatttg
2701 attcagaata tactataata gctaccagtt cacaacctaa tgatgctaaa ttttctagta
2761 acctgactgt tcaagcaatg tttatcccac caggtgcacc caaccccagt aaatgggatg
2821 actatacatg gcaaagtgca actaatccca gtgtattctt taatgtagga aaatcagcca
2881 gatttagtgt accttattta ggaatagctt ctgcttacaa ctgtttctat gacggttact
2941 ctcatgataa cctaactaca ccatatggaa taaatgtgct aaaccacatg ggttcaatgg
3001 cttttagagt agttaatgag catgatattc acaccaccca tgtcaaaatc agagtttatc
3061 atagagctaa acacattaga gcatggatac ccagagctcc tagagtttta gagtacctac
3121 acattggtag aacaaactac aaacaaaatc ccaaaaatcc cattaagact agggattcta
3181 tcagtacata tgggttggga cccagatttg gtggagtgtg cactggtaat attaaaataa
3241 tgaactatca cctgatgtct catgaggaca ctcttaacct tgtcacacct ctacctgaaa
3301 gggaccttgc catcgtgagc acgggtgctc acggttcaga gaccgtccca caatgtaatt
3361 gtatgtcagg agtttattac tcaaggtact ataacaaatt ttaccccgta atttgtgaaa
3421 aaccaacatg tttatggatt gaaggtaaca attactatcc aagcagatac caacaggggg
3481 taatgagagg tgtcggccca gctgaaccag gtgattgtgg aggtatcttg aggtgcatac
3541 atggacccat tggactttta actgcaggtg gaagtggcta tgtttgcttt gctgatatca
3601 gagcattgga catgttcaaa gctgaatacc aaggaatttc agactacatc tcgaatttag
3661 gaaaagcctt tgggactgga ttcactgaac atatcagtga aaaagtaaca gaattgcaaa
3721 atatgtcact gggttactta aatactaagg ttttatctaa aatagtaaaa attgtttcag
3781 ctttagttat aatttgtagg aatcatgatg atttgatcac tgttacagcc acactagcat
3841 tattaggatg tgatggatca ccatggagat acttaaaaat gtatataagt aaacactttt
3901 gcttacctta tatagaaaga cagtccaatg atttatggtt taagaagttt aatgacatgt
3961 gtaatgcagc aaaagggcta gaatggattg caaacaaaat ctccaaactt atagattggg
4021 tcaaacagaa aatcttgcca caggcaaggg acaagttaga tttttgtaga aggcttaaac
4081 agctagatat tttagaaaga caaatagatt cattgcacat gaaccaggtt aatgataatg
4141 atagagaggt cttatttaat aatatattat ggctggaaca aatgtcccag aaatttgcac
4201 cattgtatgc cgttgaggca aagagaatca aaatgcttaa gaataaaatg actaatttta
4261 tacagttcag gtcaaaacat cgcacagaac cagtgtgtgt gctaatacat ggttcacctg
4321 gctcaggtaa atcattaacc acctctttga ttggcagagc tattgcggac agttgtggtt
4381 cctctgtgta ctcactaccc ccagacccaa aacactttga tggttatcag cagcaagctg
4441 tagtcatact tgatgaccta aatcaaaatc caaatggtga agatattagt actttctgtc
4501 aaatggtttc atcagttgat tttattcccc caatggcaaa cctggacaat aaaggtatgt
4561 tgttcaccag caactttgta ttggcatcca caaattccca aacactaaac ccaccaacag
4621 ttcttaatcc cgaagctcta gcacgtagat ttggatttga cttggatatg tgtttgcata
4681 ccacatacac aaaatcagga aaattgaatg ccgcattagc atcagaattg tgtaaagatt
4741 gtcacaaacc aacaaacttc aagagatgct gccctctgat ttgtggcaaa gccttaagct
4801 tggttgacag acgtacaaat gttaggttca gcatagacca gttagtcact gcaattataa
4861 ctgaacatgc aaataaaacc aaaatttcca gttcgctgga ggtgttattc caaggaccaa
4921 catacaagga cttgcacata gatgtgacaa ctacaccacc tccagaatgc atagtagacc
4981 tacttaaatc tgtggataat gaggaggtca gacaatactg tcaagaaaaa agatggctta
5041 tacctgaaat tccaactaat gtagagagag cagtgaacca ggccacaaac ttaatcaata
5101 caattctaat gtttataacc acacttggta taatttacat gatatacaag ctttttgctc
5161 agacacaagg accctattca ggacttgata ataaatccaa gctcaagccc cctacactta
5221 gagcagttgt gacacaagga cccaatacag agtttgcttt atccttgctt agaaagaata
5281 tagtaacagt cactactgac aaaggagagt ttacaggatt gggaatacat gaaaggatat
5341 tagtaatacc aacccatgca cagccctcag aaaaagttct tatcaatgga tttgctacta
5401 acgttaaaga taaatggaaa ttggtggatc cagacaattt aaatttggaa atcactgtcc
5461 tagaattaga caggaatgaa aaatttaggg acattagaat gttcattgca gatgacccag
5521 agtgcaatga agcatcactt gttatacatt caaataactt caaggacact atcttgacgg
5581 ttggtgcgac cacactagcc ggtataataa atttaagcaa cacacccact gcgcgaatga
5641 ttcgctatga tttccctacc agaacaggac agtgtggtgg agtcctatgc tcaacaggca
5701 agatatatgg tattcatgta ggtggcaatg gaaaacaagg attctcagct caacttaaaa
5761 aacagtactt tgtacaaaaa cagggtcaaa tcattacaaa aagaaatgtt agggaactaa
5821 gtatcaaacc cattaacact ccaaatacaa ccaaacttca tcccagtgtt ttctataatg
5881 tgttccctgg aagtaaagaa ccagcagttc tacatcctgc agatgaacga cttgaagtca
5941 attttgagga atccctattc tcaaaatata aaggcaatgt gaagatggag atcacagaga
6001 acatgaaggt ggccattgac cactatgctg gccaactcct atcacttgat atacccacac
6061 aagaacttac cctgaaagag gccctctatg gtacagatgg attagaaccc atagacttga
6121 acactagtgc aggataccca tatgttagtt tgggcatcaa aaagagatct attttaaata
6181 aggagaccaa agacacaaca aaaatggaag agtgcctaag taaatatggt attgacctgc
6241 cactggttac ctatataaaa gatgaactca gaggcaaaga taaaattagg ctaggaaaga
6301 gtagattaat tgaggcatcc agtctaaatg attcagttaa catgagaatc aaattgggta
6361 acttatataa agcttttcac aaaaatcctg gaatactaac cggttctgcc gttggttgtg
6421 atccagacac cttttggtca gttatacctt gtttgttgga tggagagtta attgcttttg
6481 attattcaaa ctttgatgct agtctttcac cagtttggtt tgagtgttta gagcaagtgt
6541 taaagaagat aggatttcaa tgttcagaat taattcaaca aatatgtacc acccatcata
6601 tctttaaaga tcagatttat gtggtagaag gtggtatgcc ctccgggtgc tctggaacta
6661 gcatctttaa ttcaatgatt aacaacataa taatcaggac tctaatatta gatgtttata
6721 aaggtataga actggattcc ttgagaataa tagcatatgg tgatgatgtt attgtttcat
6781 atccctttcc tttggacccg gaaaagattg cacagcaagg agtcatatat ggtttaacca
6841 tcacaccacc agacaagtca cctaagttta caaaaatgga ctggaatact gtaactttct
6901 taaaaagaca gtttaaacca gataaggaat ttccatttct catacaccca gtaatgccaa
6961 tgtcagatat tcatgaatct attagatgga caaaagaccc taaaaacact caagaccaca
7021 ttagatcatt gtgcatgatg gcctggcact caggagagga tgaatacaac aagtttgtgg
7081 atggaatcag gagtactgat attgggaaag cattgctgat accatcttac tctgtcctca
7141 gacgcagatg gcttgatttg ttttaaaatt tctttcttta gatatataga gtataaattt
7201 agtgtagtga atttttcctc tat
//
