LOCUS FJ445143 7139 bp ss-RNA linear VRL 10-APR-2009
DEFINITION Human rhinovirus 60 strain ATCC VR-1473, complete genome.
ACCESSION FJ445143
VERSION FJ445143.1
DBLINK BioProject: PRJNA32533
KEYWORDS .
SOURCE rhinovirus A60
ORGANISM rhinovirus A60
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Picornaviridae; Ensavirinae; Enterovirus;
Rhinovirus A.
REFERENCE 1 (bases 1 to 7139)
AUTHORS Palmenberg,A.C., Spiro,D., Kuzmickas,R., Wang,S., Djikeng,A.,
Rathe,J.A., Fraser-Liggett,C.M. and Liggett,S.B.
TITLE Sequencing and analyses of all known human rhinovirus genomes
reveal structure and evolution
JOURNAL Science 324 (5923), 55-59 (2009)
PUBMED 19213880
REFERENCE 2 (bases 1 to 7139)
AUTHORS Spiro,D., Kuzmickas,R., Palmenberg,A.C., Wang,S., Djikeng,A.,
Rathe,J.A., Overton,L., Tsitrin,T., Gallagher,T., Liu,J.,
Pushparaj,V., Tallon,L.J., Fraser-Liggett,C.M. and Liggett,S.B.
TITLE Direct Submission
JOURNAL Submitted (10-NOV-2008) University of Maryland School of Medicine,
20 Penn St, Baltimore, MD 21201, USA
FEATURES Location/Qualifiers
source 1..7139
/organism="rhinovirus A60"
/mol_type="genomic RNA"
/strain="ATCC VR-1473"
/culture_collection="ATCC:VR-1473"
/db_xref="taxon:185919"
/note="HRV60;
hrv-60"
CDS 614..7093
/codon_start=1
/product="polyprotein"
/protein_id="ACK37399.1"
/translation="MGAQVSRQNVGTHSTQNVVSSGSSLNYFNINYFKDAASSGASKL
EFSQDPSKFTDPVKDVLEKGIPTLQSPTVEACGYSDRIIQITRGDSTIISQDVANAVV
GYGVWPHYLTAQDATAIDKPSQPDTSSNRFYTLESKLWTNESKGWWWKLPDALKDMGV
FGQNMYYHFLGRSGYTVHVQCNSSKFHQGTLIVAMIPEHQLAAAEKGNVTAGYNLTHP
GEKGRTIGIPDRLHPSKQPSDDNWLNFDGTLLGNITIFPHQFINLRSNNSATIIVPYV
NAVPMDSMLSHNNWSLVIIPICPLEVSTTGTNGIPITVSISPMFAEFSGARARSQGLP
TMLTPGSGQFMTTDDFQSPCALPWFHPTKEISIPGEVKNLIELCQVDSMIPINNVADK
IRSVDMYTVVLQRQDELMQEVFAIRVDVASQPLATTLIGEISSYYTQWTGSLRFSFMF
CGTANTTLKLLIAYTPPGIAKPKSRKEAMLGTHIVWDVGLQSTISMIVPWVSASHFRN
TTPDTYSSAGFITCWYQTNLVFPPDTPTTARMLCFVSGCKDFCLRMARDTNLHKQSGI
ITQNPVESYIDGVLNEVLVVPNIRESQPTTSNSAPALDAAETGHTSNVQPEDVIETRY
VQITQTRDEMSVESFLGRSGCIHISKLEIDYSNYNEENKNFTTWQINLKEMAQIRRKF
ELFTYVRFDSELTLVPCIAAKNDGIGHVVMQYMYVPPGAPLPTKRDDYTWQSGTNASV
FWQHGQTYPRFSLPFLSIASAYYMFYDGYDGHSTESHYGTVVTNDMGTLCSRIVTEHH
GTQVHVATRIYHKAKHVKAWCPRPPRAVEYRHTHVNNYRPDDGEAAITIPIRTDIRAI
RTVGPSDMYVHVGNLIYRNLHLFNSEISDSVLVSYSSDLVIYRTNTTGDDYIPTCDCT
DATYYCKHKNRYYPIKVTSHDWYEIQESEYYPKHIQYNLLIGEGPCEPGDCGGKLLCK
HGVIGIITAGGEGHVAFIDLRHFHCAEEQGITDYIHMLGEAFGNGFVDSVRDQVNAIN
PINNISKKLIKWMLRIISAMVIIIRNSSDPQTIVATLTLIGCSGSPWRFLKEKFCKWT
QLTYIHKESDSWLKKFTEMCNAARGLEWIGNKISKFIDWMKSMLPQAQLKVKYLSELK
KLNLLEKQIENLRGADTNTQEKIKLEIDTLHDLSCKFLPLYASEAKRIKVLFNKCNTI
IKQKKRSEPVAIMIHGPPGTGKSITTSFLARMITNESDIYSLPPDPKYFDGYDQQSVV
IMDDIMQNPDGEDMSLFCQMVSSVAFIPPMADLPDKGKPFDSRFVFCSTNQSLLAPPT
ITSLSAMNRRFYLDLDITVHDNYKDNLGKLDVPKAFKPCDVDTKIGNAKCCPFICGKA
VSFKDRNTCQVYPLSQIYNLIIEEDKRRRNVVDVMSAIFQGPISMNAPPPPAIADLLQ
SVRTPEVIKYCEENKWVIPADCKIERDLNLANNITTIIANIISIAGIIFVIYKLFCSL
QGPYSGEPKPKTKVPERRVVAQGPEEEFGRSLIKHNSCVVTTSNGKFTGLGIYDRTLI
IPTHADPGKEVQIDGITTTVQDSYDLYNKDGVKLEITVLKLKRNEKFKDIRKYIPENE
DDYPDCNLALSANQPETTIISVGDVVSYGNILLSGNQTARMLKYNYPTKSGYCGGILY
KIGQVLGIHVGGNGRDGFAAMLLRSYFTEAQGQITTTKTTAECNLPSIHTPSKTKLQP
SVFYNVFPGNKEPAVLSEHDPRLKTNFKEALFSKYKGNNQCEINDHIRVAISHYSAQL
ATLDIDPSPISLEDSVFGIEGLEALDLNTSAGFPYVSMGIKKRDLINKQTKDITKLKM
AMDKYGVDLPMVTFLKDELRKQEKISAGKTRVIEASSVNDTVLFRTTFGNLFSKFHLN
PGIVTGSAVGCDPEIFWSKIPAMLNGECLMAFDYTNYDGSIHPMWFQALKEILSNLGF
QPDLIDRLCKSKHIFKNIYYEVEGGVPSGCSGTSIFNTMINNVIIRTLVLDAYKNIDL
DKLKIIAYGDDVIFSYIYQLDMEAIAKEGSKYGLTITPADKSSEFKQLDYSNVTFLKR
GFKQDDKYHFLIHPTFPIEEIHESIRWTKKPSQTQEHILSLCHLMWHNGRDVYKQFEH
KIRSVSAGRALYIPPYELLQHEWYEKF"
mat_peptide 614..820
/product="1A"
/note="VP4"
mat_peptide 821..1606
/product="1B"
/note="VP2"
mat_peptide 1607..2320
/product="1C"
/note="VP3"
mat_peptide 2321..3190
/product="1D"
/note="VP1"
mat_peptide 3191..3616
/product="2A"
/note="P2-A"
mat_peptide 3617..3901
/product="2B"
/note="P2-B"
mat_peptide 3902..4867
/product="2C"
/note="P-2C"
mat_peptide 4868..5098
/product="3A"
/note="P3-A"
mat_peptide 5099..5161
/product="3B"
/note="VPg"
mat_peptide 5162..5710
/product="3C"
/note="P3-C"
mat_peptide 5711..7090
/product="3D"
/note="polymerase"
ORIGIN
1 ttaaaactgg atccaggttg ttcccacctg gatctcctaa cgggagtagt acactattat
61 tacggtaatt ttgtacgcca gttttatgat cccctccccc ttttgtaact tagaagttaa
121 acaaaatgac caataggcgg caatctccca gattgtcaaa ggtcaagcac ttctgtttcc
181 ccggtcaaag ctgatatgct ccaacagggc aaaaacagct gagatcgtta cccgcaaagt
241 gcctacgcaa agcttagtaa cacttttgaa gttacgtggt tggtcgctca gccaaacccc
301 atggtagacc tggcagatga ggctagaagt accccactgg cgacagtgtt ctagcctgcg
361 tggctgcctg cacaccctct gggtgtgaag ccatataatg gacaaggtgt gaagagcccc
421 gtgtgctcac tttgagtcct ccggcccctg aatgtggcta accttaaccc tgcagctagt
481 gcatgcaatc cagtatgtat ctagtcgtaa tgagcaattg cgggatggga ccaactactt
541 tgggtgtccg tgtttccttt ttatccttat tgattgctta tggtgacaat atatagtatt
601 atatattgac rccatgggcg cccaggtatc tagacagaat gttggtacac actcaactca
661 aaatgtggtt tctagtggat ctagtttaaa ttatttcaac atcaattatt tcaaagatgc
721 agcctcgagc ggtgcatcaa aattggaatt ttcacaagat ccaagtaaat tcactgatcc
781 agtcaaagat gtactagaga aaggcattcc cactcttcaa tccccaacgg tcgaagcgtg
841 tggatactct gacagaatca ttcaaattac tagaggagat tctactataa tatcacaaga
901 tgtggccaat gctgttgttg gctatggagt atggcctcac tatctcacag cacaggatgc
961 caccgcaata gacaaaccat cacaacctga cacatcatct aatagatttt atacattaga
1021 gagtaaattg tggacaaatg aatcaaaagg ttggtggtgg aagttgcctg atgctcttaa
1081 ggatatgggt gtttttggac aaaacatgta ctaccacttc ctcggaagaa gtggttatac
1141 agtccatgtc caatgcaatt ctagcaaatt tcaccagggc acattgatag tagcaatgat
1201 accagaacat caattagcag cagcagaaaa gggaaatgta actgctggtt acaacttgac
1261 acatccaggt gagaaaggta gaacaattgg aatacccgat cgtttgcatc caagtaaaca
1321 acctagtgat gacaattggt taaatttcga tggcacattg ctaggaaata taaccatctt
1381 tccacatcaa ttcatcaact tgaggagcaa caattcagct acaataattg ttccttatgt
1441 gaatgcagta cctatggatt ccatgctcag ccataacaat tggagtttgg ttataatccc
1501 catctgtcct ttagaagtta gtactactgg aactaatggt atacctataa ctgtgtctat
1561 cagtcctatg tttgctgaat tttctggtgc acgtgctaga agccaaggtt tgccaactat
1621 gctaacacct gggtctggac aatttatgac tacagatgat ttccaatcac cttgtgcact
1681 accatggttc caccccacaa aggagatttc aatacctggt gaagttaaga atttgattga
1741 attgtgccaa gttgatagta tgattccaat aaataatgtt gcagacaaaa tcaggagtgt
1801 ggacatgtat acagtagtgc tgcagagaca agatgaacta atgcaagagg tctttgctat
1861 aagggttgat gtggcatcgc aaccgcttgc aacaacatta attggtgaaa tctcaagtta
1921 ttatacccaa tggactggaa gtctccgctt cagcttcatg ttttgtggaa cagctaatac
1981 aacacttaaa cttttaatag catacacacc cccaggcata gcaaaaccca aaagtaggaa
2041 agaagcaatg ttgggaaccc atattgtatg ggatgtgggt ttacaatcaa caatatccat
2101 gattgtacct tgggttagtg ctagccattt cagaaatacc acacctgata catactcttc
2161 agctgggttc ataacatgct ggtatcaaac taatcttgtg tttcctccag ataccccaac
2221 cactgctaga atgctttgct tcgtatctgg ctgtaaagat ttttgtctac gtatggctag
2281 agatacaaac ctgcacaaac aatctggtat cattacacag aatccagtag aaagctacat
2341 agatggggtc ttaaacgaag tccttgtggt tccaaacatt agggagagcc aacccactac
2401 ttctaattct gctccagcat tggatgctgc tgagactggt cacactagta atgtacagcc
2461 tgaggacgtg attgaaacac gttatgtgca gattacacaa actagagatg agatgagtgt
2521 tgagagcttc ctcggcagat ctggatgtat tcatatttcc aaattagaaa ttgactatag
2581 taactacaat gaggagaata aaaatttcac aacttggcaa attaacctaa aggaaatggc
2641 acaaataaga agaaagtttg aattatttac atatgtaaga tttgattcag aattgactct
2701 ggtcccatgc atagcagcaa aaaatgatgg cataggtcat gttgtcatgc aatacatgta
2761 tgtcccccca ggagcaccat tacctactaa aagagacgat tacacatggc aatctggcac
2821 aaatgcttct gtattttggc agcatggaca aacataccct agattttcac ttccatttct
2881 aagtattgca tctgcctact acatgtttta tgatggttat gatggtcact caactgaatc
2941 acattatggg acggttgtga ccaatgacat gggaacgttg tgctccagaa tagttactga
3001 acaccatggt acacaggttc acgtcgcaac aagaatatat cataaagcaa agcatgttaa
3061 ggcttggtgt ccaagacctc caagggcagt tgaatataga cacacacatg taaacaacta
3121 tagaccagat gatggagaag cagccataac aatccccatt agaactgata tacgagcaat
3181 cagaacagtt ggtcctagtg atatgtatgt gcatgtaggg aacttaatat atagaaattt
3241 acatttgttt aactcagaaa ttagtgattc tgttttagtt tcttactcat cggatttagt
3301 catttaccga acaaacacca caggtgatga ctacattcca acttgtgact gtacagatgc
3361 aacatattac tgcaagcaca aaaacaggta ttatccaatc aaagttacca gccatgattg
3421 gtatgaaatt caggaaagtg agtattaccc aaaacatata caatacaact tattaattgg
3481 tgaagggcct tgtgaacctg gtgattgtgg tggaaaatta ctatgtaagc atggtgtgat
3541 tggtatcatc acagctggtg gagaagggca tgtggcgttt atagatctac gccacttcca
3601 ttgtgcagag gagcaaggaa tcactgatta catacatatg cttggagaag catttggtaa
3661 tggatttgta gatagtgtaa gagatcaagt taacgccata aatccaatta ataatatcag
3721 taaaaaatta attaaatgga tgcttaggat aatttcagca atggtgataa taattagaaa
3781 ttcttcggac cctcaaacaa ttgtagccac actaacatta atagggtgct ctggatcacc
3841 atggcgtttt cttaaggaga aattctgcaa atggacacaa ttaacttata tccataagga
3901 atcagactca tggcttaaaa aatttacaga aatgtgtaat gcagctagag gtcttgagtg
3961 gattggtaat aaaatatcta aatttattga ttggatgaaa tccatgctac cacaagcaca
4021 attaaaagtc aaatacctta gtgaattgaa gaaattaaat ttactagaaa agcaaattga
4081 gaatttgcgt ggtgctgata ctaatacaca agaaaaaatt aaattagaaa ttgacacact
4141 acatgatttg tcctgtaaat ttctccctct atatgctagt gaagctaaaa ggattaaagt
4201 attattcaac aagtgcaaca caatcataaa gcagaagaag agaagtgaac cagttgccat
4261 catgatacat ggcccaccag gaacaggcaa atctataaca accagtttcc ttgcaaggat
4321 gataaccaat gagagtgata tttattcatt acctccagac ccaaaatact ttgatggtta
4381 tgatcagcag agtgttgtta taatggatga tattatgcaa aatccagatg gagaagatat
4441 gtcactattt tgtcagatgg tatcaagtgt ggcatttata cctccaatgg ctgatcttcc
4501 agataaaggt aaaccatttg actctagatt tgttttttgt agtacaaatc aatccttact
4561 agctccacca actattacct ctctctctgc aatgaatcgg agattctatc tagacttgga
4621 catcacagtt catgataatt ataaggataa tctgggtaaa ctggatgtgc caaaggcatt
4681 caaaccatgt gatgttgaca caaaaatagg taatgctaaa tgttgtccat ttatctgtgg
4741 taaagctgtg tcattcaaag atcgcaatac ctgccaggtg tacccactta gtcaaatcta
4801 taatttaatt atagaagagg ataagcgccg tagaaatgtt gttgatgtta tgtcggcaat
4861 tttccagggc cctatatcca tgaatgctcc cccaccacca gcaatagcag atttgttgca
4921 atcagttaga actccagaag tcattaaata ctgtgaggag aataaatggg ttatcccagc
4981 agattgcaaa atagaacgtg atttaaactt agcaaataat ataacaacaa tcatagcaaa
5041 cattattagt atagcaggta ttatatttgt aatttataaa ttattctgtt cacttcaagg
5101 tccctattct ggggaaccta aacctaaaac taaagttcca gaaaggagag tagtagcaca
5161 gggaccagaa gaagaatttg gtcggtcact tattaaacat aactcatgtg tggtaaccac
5221 ctcaaatggt aaatttacag gactaggaat ttatgataga acactcatta taccaacaca
5281 tgcagaccca ggtaaagagg tacaaataga tggtattaca actacagtac aagattctta
5341 tgatttatac aataaggatg gggtaaagct agagatcaca gttcttaaac ttaagagaaa
5401 tgagaagttc aaagacatca gaaagtatat tccagagaat gaagatgatt acccagattg
5461 taatttggct ttatctgcta accagccaga aactaccata attagtgttg gagatgtcgt
5521 gtcatatggc aacatcttac ttagtgggaa tcagacagca agaatgctta aatacaatta
5581 ccctacaaaa tcaggatatt gtggtggaat tctatataaa attggacaag tcttgggtat
5641 acatgttggt ggtaatggga gagatggatt tgcagctatg ttactaagat cttacttcac
5701 agaagcacaa ggccaaataa ccaccaccaa aactactgct gagtgtaact tacctagtat
5761 tcacacccca agtaaaacca aattgcaacc tagtgtattt tataatgtct ttccaggaaa
5821 caaagagcca gctgtacttt cagaacatga ccctagatta aagactaact ttaaagaagc
5881 tttgttctct aagtataaag gaaataacca gtgtgagatt aatgaccata ttagagtggc
5941 aatttcccat tattcagcac aattggcaac attagatatt gacccaagtc caatttcttt
6001 agaagatagt gtttttggta tagaaggact agaagcactt gatctcaaca ctagtgctgg
6061 atttccctat gtctccatgg gtattaagaa aagggatctg attaataagc aaacaaaaga
6121 tatcacaaag cttaagatgg caatggacaa atatggtgtt gatttaccca tggtcacatt
6181 tcttaaagat gaacttagaa aacaggaaaa gatttctgct ggaaaaacac gtgtcataga
6241 agctagtagt gtaaatgata ctgtactatt tagaacaaca tttgggaatc tcttttcaaa
6301 atttcattta aaccctggga ttgtaactgg ttccgctgtg ggttgtgacc cagaaatatt
6361 ttggtctaaa ataccagcta tgttaaatgg tgaatgtttg atggcatttg attacacaaa
6421 ttatgatggt agtattcatc caatgtggtt ccaagctctt aaagaaattt tatctaattt
6481 ggggtttcaa cctgatctaa tagacagatt atgcaagtca aaacacattt ttaaaaacat
6541 atactatgag gttgaaggtg gtgtaccatc aggctgttct gggaccagta tattcaacac
6601 aatgataaat aatgtcataa tcagaacatt agttttagat gcatataaaa acattgattt
6661 ggataaactt aaaataatag catatggtga tgatgttatt ttctcataca tatatcaact
6721 agacatggag gcaattgcca aggaaggttc aaaatatggc ctcacaataa ctcctgctga
6781 taaatctagt gaatttaaac aattggatta tagtaatgta acttttctaa aaagaggatt
6841 taaacaagat gacaaatatc attttttaat acatccaact tttccaattg aagagattca
6901 tgagtccata cgatggacaa agaaaccatc tcagacacaa gaacatatcc tttcactgtg
6961 ccatttaatg tggcacaatg gtagggatgt gtacaagcag tttgaacaca agatacgcag
7021 tgtgagcgct ggtcgcgcac tgtacattcc cccttatgaa ttgcttcagc atgagtggta
7081 tgagaaattt taaattgttt agatatagaa ataataaaca attagttttt tagttttat
//
