LOCUS FJ755405 6771 bp RNA linear VRL 24-JUL-2016
DEFINITION Human astrovirus 1 Beijing/293/2007/CHN, complete genome.
ACCESSION FJ755405
VERSION FJ755405.1
KEYWORDS .
SOURCE Human astrovirus 1 Beijing/293/2007/CHN
ORGANISM Human astrovirus 1 Beijing/293/2007/CHN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes;
Stellavirales; Astroviridae; Mamastrovirus; Mamastrovirus 1.
REFERENCE 1 (bases 1 to 6771)
AUTHORS Guo,L., Xu,X., Song,J., Wang,W., Wang,J. and Hung,T.
TITLE Molecular characterization of astrovirus infection in children with
diarrhea in Beijing, 2005-2007
JOURNAL J. Med. Virol. 82 (3), 415-423 (2010)
PUBMED 20087940
REFERENCE 2 (bases 1 to 6771)
AUTHORS Guo,L., Wang,J. and Hung,T.
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2009) State Key Laboratory of Molecular Virology
and Genetic Engineering, Institute of Pathogen Biology, Chinese
Academy of Medical Sciences, 9# Dong Dan San Tiao, Beijing 100730,
China
FEATURES Location/Qualifiers
source 1..6771
/organism="Human astrovirus 1 Beijing/293/2007/CHN"
/mol_type="genomic RNA"
/strain="Beijing/293/2007/CHN"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:626181"
/country="China"
/collection_date="Nov-2007"
CDS 86..2848
/note="ORF1a; contains 3C-like serine protease motif"
/codon_start=1
/product="nonstructural protein"
/protein_id="ACN78556.1"
/translation="MAHGEPYYSSKPDKDINFGSTMARRQMTPTMVTKLPKFVRNSPQ
AYDWIVRGLIFPTTGKTYFQRVVVITGGLEDGTYGSFVFDGREWVEIYPIEHLNLMSS
LKLIHKANALQERLRLSQEEKATLALDVQFLQHENVRLKELIPKPEPRKIQMKWIIVG
AVLTFLSLIPGGYAQSQTNNTIFTDMIAACKYSTETLTENLDLRIKLALANITISDKL
DAVRQILNFAFVPRTHWLRTVFYYIHYYEMWNIFMFVLAIGTVMRSARPGTDLITLAT
SHLSGFRMAVLPTIPFHTTMTLWVMNTLMVCYYFDNLLAITMAILAPILGIIFLCFME
DSNYVSQIRGLIATAVLIAGGHACLTLTGTTTSLFVVILTCRFIRMATVFIGTRFEIR
DANGKVVATVPTRIKNVAFDFFQKLKQSGVRVGVNEFVVIKPGALCVIDTPEGKGTGF
FSGNDIVTAAHVVGNNTFVNVCYEGLMYEAKVRYMPEKDIAFITCPGDLHPTARLKLS
KNPDYSCVTVMAYVNEDLVVSTAAAMVHGNTLSYAVRTQDGMSGAPVCDKYGRVLAVH
QTNTGYTGGAVIIDPADFHPVKAPSQVELLKEEIERLKAQLNSATENSTNVVTQQPTV
TLEQKSVSDSDVVDLVRTAMEREMKVLRDEINGILAPFLQKKKGKTKHGRGRVRRNLR
KGVKLLTEEEYRELLEKGLDRETFLDLIDRIIGERSGYPDYDDEDYSDEDDDGWVMVT
NEVEFDYTEVINFDQAKPTPAPRTTKLKPNPEPEVEAQPLDLSQKKEKQPEHEQQAVK
PNKPQKSEPQPYSQTYGKAPIWESYDFDWDEDDAKFILPAPHRLTKADEIVLGSKIVK
LRTIIETAIKTQNYSALPEAVFELDKAAYEAGLEGFLQRVKSKNKAPKNYKGPQKTKG
PKPTTH"
CDS <2788..4335
/note="ORF1b; contains RNA-dependent RNA polymerase motif"
/codon_start=1
/product="nonstructural protein"
/protein_id="ACN78557.1"
/translation="GSKKLQRAPEDQGAQTYHSLDSWKSLLEPPRERRCVPANFPLLG
HLPINRPIFDDKKPKDDLLGLLPEPTWHAFEEYGPTTWGPQAFIKSFDKFFYAEPIDF
FSEYPQLCAFADWATYREFRYLEDTRVIHITATEKNTDSTPAYPKMNYFDTEEDYLEA
HGWAPYIREFTRVFKGDKPEVLWYLFLKKEIIKEEKIRNFDIRQIVCADPIYTRIGAC
LEAHQNALMKQHTDTSVGQCGWSPMEGGFKKTMQRLVSKGNKHFIEFDWTRYDGTIPP
ALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPSGEVTLQTRGNPSGQFS
TTMDNNMVNFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLSTTPSVPDNYEERVITM
YRDIFGMWVKPGKVICRDSIVGLSFCGFTVNENLEPVPTSPEKLMASLLKPYKILPDL
ESLHGKLLCYQLLAAFMAEDHPFKVYVEHCLSRTAKQLRDSGLPARLTEEQLHRIWRG
GPKKCDG"
CDS 4328..6691
/note="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="ACN78558.1"
/translation="MASKSNKQVTVEVNNNGRNRSKSRARSQSRGRDRSVKITVNSKN
RIRRQSGRGKHQSSQRVRNIVNKQLRKQGVTGPKPAICQRATATLGTVGSNTSGTTEI
EACILLNPVLVKDATGSTQFGPVQALGAQYSMWKLKYLNVKLTSMVGASAVNGTVLRV
SLNPTSTPSSTSWSGLGARKHLDVTVGKNATFKLKPSDLGGPRDGWWLTNTNDNASDT
LGPSIEIHTLGRTMSSYKNEQFTGGLFLVELASEWCFTGYAANPNLVNLVKSTDKQVS
VTFEGSAGSPLIMNVPEGSHFARTVLARSTTPTTLARAGERTTSDTVWQVLNTAVSAA
ELVTPPPFNWLVKGGWWFVKLIAGRTRTGTRSFYVYPSYQDALSNKPALCTGSTPGGM
RTRNPVTTTLQFTQMNQPSLGHGEAPAAFGRSIPTPGEEFKVILTFGAPMSPNANNKQ
NWVNKPLDAPSGHYNVKIAKDVDHYLTMQGFTSIASVDWYTVDFQPSEAPAPIQGLQV
LVNSSKKADVYAVKQFVTAQTNNKHQVTTLFLVKVTTGFQVNNYLSYFYRASATGDAT
TNLLVRGDTYTAGISFTQGGWYLLTNTSIVDGALPPGWIWNNVELKTNTAYHMDKGLI
HLIMPLPESTQMCYEMLTSIPRSRAAGYGYESDNTEYLDAPDFADQLREDIETDTDIE
STEDEDDEADRFDIIDTSDEEEENDTDRATLLSTLVNQGMTMTRAIKIARRAFPTLTD
RIKRGVYMDLLVSGASPNSAWSHACEEARKAAREINPCTSGSRGHAE"
ORIGIN
1 gccaagaggg gggtggtgat tggcctttgg cttatccttg tatagataaa attttcctac
61 actcatttat taaattgtag acaggatggc acacggtgag ccatactata gttctaaacc
121 tgacaaagat atcaactttg ggagcacaat ggcacgtagg caaatgacac ctaccatggt
181 tacaaaactt cccaagtttg ttaggaattc tccacaagcc tatgattgga tcgtaagagg
241 tctaatcttc cccaccactg gaaaaaccta tttccaacga gttgtggtga ttactggtgg
301 acttgaggat ggaacatatg gctcatttgt atttgatggt agagaatggg tagagatcta
361 tccaatagaa catctaaatc tcatgtcatc cttgaaacta atacacaagg ccaatgctct
421 tcaggagagg ttacgtctct ctcaagaaga gaaagccacc cttgctcttg atgtgcaatt
481 ccttcagcat gaaaacgtgc gattgaagga attgatccca aaaccggagc cacgaaagat
541 acagatgaag tggataattg tgggagcagt gcttacattt ttatctctaa tacctggggg
601 ctatgcgcaa agtcaaacca acaacactat attcacagac atgatagctg cctgcaaata
661 ttcaactgag acattaacag aaaaccttga ccttagaatt aagctcgcac tagcaaatat
721 aaccatcagt gataagctag atgctgtgag gcaaattctt aattttgcct ttgtacctag
781 aactcattgg ttaagaactg tcttctacta tatccattat tatgaaatgt ggaatatttt
841 tatgtttgtt cttgcaattg gcactgtcat gaggagcgcc cgccctggta cagatttaat
901 tacacttgca acgtcccact tgtctggctt taggatggct gttttaccca caattccatt
961 ccacactact atgactttgt gggtcatgaa cacgcttatg gtttgttact actttgataa
1021 tttgctagca ataacaatgg caatcttagc accaattctt ggcatcatct tcttgtgctt
1081 catggaagac tccaattatg tgagccagat acgtggtctt attgctacag cagtattaat
1141 tgctggtggg catgcctgtt taacactcac aggtacaacc acgtcattat ttgttgtcat
1201 attaacttgt aggttcatac gtatggcaac ggtttttatt ggcaccagat ttgagatccg
1261 tgatgctaat gggaaggtcg tagctactgt accaactagg ataaaaaatg ttgcatttga
1321 tttcttccag aagttaaaac agtcaggggt gagggttgga gtcaacgaat tcgttgtcat
1381 aaaaccaggt gcgttatgtg ttatagatac ccctgaagga aaaggaacag gtttcttctc
1441 tggcaacgac atagtaacag cagcacatgt tgttggcaat aatacctttg tgaatgtgtg
1501 ctatgagggc ttgatgtacg aagcgaaagt tcggtacatg cctgaaaagg acatagcatt
1561 cataacctgt cctggtgact tgcatccaac agcaagacta aagttatcaa agaacccaga
1621 ttatagttgt gttacagtta tggcttatgt gaatgaagat ctcgtggttt caaccgcagc
1681 tgccatggta catggtaaca ctctctcata tgcagttcgc acccaagacg ggatgtcggg
1741 tgcaccagtt tgtgacaaat atggtcgagt gttggcagtc catcaaacca acactgggta
1801 tactggaggt gccgtcataa ttgacccagc agacttccac ccagtgaagg ctccatctca
1861 ggtggaattg ctcaaagagg aaatagagcg actaaaagcc caactgaatt ctgccactga
1921 gaactcgacg aatgtcgtca cacaacagcc taccgttaca ctagaacaga aaagtgttag
1981 cgatagtgat gttgttgacc tagtcagaac tgcaatggaa cgtgagatga aggtgctgcg
2041 tgatgaaatt aatgggattc ttgcaccatt cctacaaaaa aagaaaggca agaccaagca
2101 cggtaggggt agagtcagac gtaaccttag aaaaggtgtg aaactcctta ctgaggaaga
2161 gtatcgagaa ctcttagaga aaggtctaga tcgtgaaaca ttccttgatc ttatagaccg
2221 tattattggt gagagatctg gctatcctga ctatgatgat gaagactata gtgatgaaga
2281 tgatgatgga tgggtgatgg ttacaaatga agtagaattt gactatactg aagtaatcaa
2341 ttttgaccaa gcaaaaccaa ctcctgcccc caggacaacc aaattaaaac ctaaccctga
2401 gccagaagtt gaagcacaac cacttgactt atcccagaag aaagagaaac aaccagaaca
2461 cgaacaacag gccgtgaagc ccaataagcc tcaaaagagt gagcctcaac catattcgca
2521 aacttatggt aaggcaccaa tctgggaatc ttatgatttt gattgggatg aggatgatgc
2581 caagttcatc cttccagcgc cacatcgact aactaaagca gatgaaatag ttcttggttc
2641 aaaaattgtt aagcttagaa cgatcattga aacagccata aagacccaga actatagtgc
2701 attacctgaa gctgtgtttg agctagataa agcagcctat gaagcaggtc tagagggttt
2761 cctccaaagg gttaagtcaa aaaataaggc tccaaaaaac tacaaagggc cccagaagac
2821 caaggggccc aaacctacca ctcattagat tcatggaaat cgctgctaga acctccgcgg
2881 gagcgaaggt gtgtacctgc taatttccca ttattaggac atttaccaat taatagaccc
2941 atttttgatg ataagaaacc caaggatgat cttcttggtc tacttccaga gccaacttgg
3001 catgcttttg aggaatatgg accaaccaca tggggcccac aagcttttat taaatctttt
3061 gataaattct tttatgcaga accaattgat tttttctcag aatatccgca gttgtgtgct
3121 ttcgctgatt gggcaactta tcgcgaattt cggtatctag aggataccag agtgatacat
3181 ataactgcaa ctgagaaaaa cactgattca acacctgcgt atcctaaaat gaattatttt
3241 gacaccgagg aagattattt ggaagcacat gggtgggcac catacataag agaattcacc
3301 agggtcttta aaggagacaa acctgaagta ctttggtacc tgttcctcaa gaaagagatt
3361 attaaggagg aaaaaattag gaatttcgat atccggcaga tagtgtgtgc cgaccccatt
3421 tacaccagga taggggcgtg cttagaggca catcagaatg ccttgatgaa acagcatacc
3481 gacacctcag ttggccaatg tgggtggtca ccaatggaag gcggctttaa aaaaaccatg
3541 cagcgcctgg tgagcaaagg taataaacat tttattgaat ttgactggac ccgctatgat
3601 ggaactatac caccagcact cttcaaacat atcaaagaaa ttaggtggaa tttcatcaat
3661 aaagaccaac gtgaaaagta caggcacgtg catgaatggt atgttgataa cctccttaat
3721 cgtcatgtac ttctaccatc tggtgaagtt accttgcaga cacgaggcaa tccatctggt
3781 cagttttcaa caacgatgga taacaacatg gtcaactttt ggttacaagc ttttgagttt
3841 gcttatttca atggtccaga taaagatctc tggaaaactt atgatactgt agtctatgga
3901 gatgacaggc tttcaacaac accttcggtg cctgataact atgaggagag agttattacc
3961 atgtatagag acatttttgg catgtgggtt aagcctggga aggtcatctg tagagacagt
4021 atagttggat tatccttttg tggcttcact gttaatgaaa atcttgaacc tgtgccaact
4081 tctccagaaa agttgatggc atcgctgtta aagccttaca aaattttgcc tgatcttgaa
4141 tcactccatg ggaagctcct atgctatcag ttgcttgctg cgttcatggc agaagatcac
4201 ccttttaagg tgtatgtaga acactgccta tcacggactg cgaagcagct tcgtgactct
4261 ggccttccgg ccagactcac agaagagcaa ctccatcgca tttggagggg aggaccaaag
4321 aagtgtgatg gctagcaagt ccaataagca ggtaactgtt gaggtcaaca acaatggccg
4381 taacaggagt aaatcaagag cccgctcaca atctagaggg cgggacagat cagttaaaat
4441 cacagttaat tcaaaaaaca ggatcagaag acagtccgga cgcggcaaac atcaatcttc
4501 tcaacgtgtc cgtaacattg tcaataagca actcaggaaa caaggtgtca caggaccaaa
4561 acctgcaata tgtcagaggg caacagcaac ccttgggacg gtcgggtcaa acaccagtgg
4621 caccactgag attgaggcgt gtattctcct caaccctgtc cttgttaagg acgctactgg
4681 gagcactcag tttggccccg tgcaggcgtt aggtgcacaa tattccatgt ggaagctgaa
4741 gtacctgaat gttaagctaa cctctatggt tggcgcatct gctgtcaatg gtactgtcct
4801 cagagtttca cttaatccca catctacgcc atcgtccact agttggtcag gattgggtgc
4861 acgtaagcac cttgatgtta cggttggtaa gaatgcaaca tttaaattga aaccttctga
4921 ccttggtgga cctagggatg gttggtggct cacaaacacc aatgataatg catctgacac
4981 cttggggccc tccattgaaa tacacacact tggacgaaca atgtcatcat ataagaatga
5041 gcagtttaca gggggcctat ttttggttga acttgcttca gagtggtgct ttacaggtta
5101 tgctgcaaat ccaaaccttg ttaatttggt caagtcaaca gacaagcagg tatctgtaac
5161 atttgaaggt agtgctggat cgccattaat aatgaatgtg ccagagggaa gccattttgc
5221 ccgaacagta cttgcgcgct cgactacacc caccactcta gcgcgcgcag gtgaaagaac
5281 cacctcagac acagtatggc aggtgctcaa tactgctgta tctgctgctg agcttgtcac
5341 acctccgccg tttaactggt tagtcaaggg aggttggtgg ttcgtaaaac ttattgctgg
5401 aagaactagg actggcaccc gtagctttta tgtgtatccc agctaccaag atgctttgtc
5461 caacaagcca gcactctgta ctggcagcac tccaggaggc atgaggaccc ggaatcctgt
5521 gacaacaacc ttacagttca cacaaatgaa ccaacctagt ctgggacatg gtgaagcacc
5581 agctgcattt gggagatcca ttccaacacc tggggaggag tttaaagtta ttctcacatt
5641 tggagcccca atgagcccta atgcaaacaa caaacaaaat tgggttaata aacctcttga
5701 tgcgccttcg ggccattaca atgttaagat tgctaaggat gttgatcact atctgaccat
5761 gcagggtttt acttctatag catctgttga ttggtacact gtagatttcc aaccatccga
5821 ggcgcctgcc cccatacaag gtttgcaggt acttgtgaat agctctaaaa aagctgatgt
5881 gtatgcagtc aaacaatttg ttacagcgca gactaacaac aaacaccagg tcacaaccct
5941 gttcctagta aaggtaacaa ctggattcca ggtgaacaac tacctgagct acttttacag
6001 ggcgtctgcc actggagatg ctacaactaa cttgctggtt agaggagaca catacacagc
6061 agggataagc tttacccagg gtggatggta tttgttgaca aatacatcca ttgttgatgg
6121 ggcactacca cctggctgga tctggaacaa cgtggaactt aaaactaata cagcatacca
6181 catggacaaa ggcctgattc acctgataat gcccttgcct gaatccacac aaatgtgcta
6241 tgagatgttg acatctattc cacgctccag agcagctggc tatggttatg agagtgacaa
6301 cactgaatat ttggatgctc cagactttgc tgaccagctc agagaagaca tagagacaga
6361 cacagacatc gagagtacag aggacgaaga cgatgaagcg gacaggtttg atatcataga
6421 cacttctgat gaagaagagg aaaatgatac agaccgtgca accctcctct ccactctcgt
6481 aaaccaagga atgacaatga cgcgtgccat aaagatagcg aggcgcgcat tccccacgct
6541 tacagatagg attaagcgtg gagtatacat ggacctgctt gtttcgggtg caagcccaaa
6601 cagcgcatgg tctcatgcgt gtgaagaagc acgcaaagca gcaagggaaa tcaatccctg
6661 cacttctgga agccgcggcc acgccgagta ggaacgaggg tacagcttcc ttcttttctg
6721 tctctgtcta gattatttta atcaccattt aaaattgatt taatcagaag c
//
