LOCUS FJ947080 7476 bp DNA circular VRL 07-DEC-2009
DEFINITION Human papillomavirus type 115 isolate GC02, complete genome.
ACCESSION FJ947080
VERSION FJ947080.1
KEYWORDS .
SOURCE human papillomavirus 115
ORGANISM human papillomavirus 115
Viruses; Monodnaviria; Shotokuvirae; Cossaviricota;
Papovaviricetes; Zurhausenvirales; Papillomaviridae;
Firstpapillomavirinae; Betapapillomavirus; Betapapillomavirus 3.
REFERENCE 1 (bases 1 to 7476)
AUTHORS Chouhy,D., Gorosito,M., Sanchez,A., Serra,E.C., Bergero,A.,
Fernandez Bussy,R. and Giri,A.A.
TITLE New generic primer system targeting mucosal/genital and cutaneous
human papillomaviruses leads to the characterization of HPV 115, a
novel Beta-papillomavirus species 3
JOURNAL Virology 397 (1), 205-216 (2010)
PUBMED 19948351
REFERENCE 2 (bases 1 to 7476)
AUTHORS Giri,A.A. and Chouhy,D.
TITLE Direct Submission
JOURNAL Submitted (21-APR-2009) Microbiologia, Instituto de Biologia
Molecular y Celular de Rosario - CONICET, Suipacha 531, Rosario,
Santa Fe 2000, Argentina
FEATURES Location/Qualifiers
source 1..7476
/organism="human papillomavirus 115"
/mol_type="genomic DNA"
/isolate="GC02"
/isolation_source="healthy skin from a sun-exposed area of
an immunocompetent individual"
/host="Homo sapiens"
/db_xref="taxon:696746"
/country="Argentina"
/collection_date="2008"
/note="type: 115"
gene 214..630
/gene="E6"
/locus_tag="HpV115gp1"
CDS 214..630
/gene="E6"
/locus_tag="HpV115gp1"
/codon_start=1
/product="early protein E6"
/protein_id="ACZ58403.1"
/translation="MARPGRVVELSGYLQIPVGDLLLPCNFCGKFLTFAELLEFDYKN
LRLIWKNALVFGCCTVCAFATAIYELRTFHQETVTGCELEGRAQAPLASVVVRCTFCL
KQLDLLEKLDICARHQEFHRVRNHWKGLCRHCRTIE"
gene 627..929
/gene="E7"
/locus_tag="HpV115gp2"
CDS 627..929
/gene="E7"
/locus_tag="HpV115gp2"
/codon_start=1
/product="early protein E7"
/protein_id="ACZ58404.1"
/translation="MIGKEATIHDIVLEDLNELVQPIDLHCNEELPDEQEEEEELAPD
RTPFKVIVYCGGSCGTKLRIFLLSTTYGIRLLEDLLLNELALLCPQCRDRIRHGGG"
gene 916..2760
/gene="E1"
/locus_tag="HpV115gp3"
CDS 916..2760
/gene="E1"
/locus_tag="HpV115gp3"
/codon_start=1
/product="early protein E1"
/protein_id="ACZ58405.1"
/translation="MAEDRGIDPIEGCSGWFIDDEAECSDLENELEKLFDEEASETDL
SDFLDDGETEQGNSRDLFHQQESAECEEQVQFLKRKYFSPKAVQQLSPRLQAISLSPQ
QKSKKRLFVEQDSGVELSGLERSVNNEAEDVAPEVEVPAAAPVVQGEEGGHAQTANLI
KDLLKCSNWRAKLLSKVKEYFGVGFYELTRQYKSNKTCCKDWVVAIYGVREELLEGCK
QLLQQYCSYIWIYINGIMSLFLLCFNSVKSRDTVCKLLMSILDVQKEQMLSEPPKLRS
PVSAIYWYKLSMDKSVYAFGTYPDWIVNQTMITHQFGDAAQFDLSQMVQWAFDNNLID
DADIAYRYAKLADSDSNARAWLAHNSQARFVKECAAMVRHYKRGEMRDMSMSEWINHV
MQTVEGEGHWSEIVKFIRFQGINFILFLEAFKHFIQGTPKKQCLLIYGPPDCGKTMFT
MSLLKFMRGRVISFANSKSHFWLQPLGECKLGLLDDATEPCWTYIDLYLRNGIDGNLV
SVDCKHKAPMQIKFPPLLITSNMDITKEERFRYLHTRIKGFEFKHKFPFNADGTPQFL
LTDQSWKSFFTRLWKQLDLSDPEDEGEEDNGGTQRSFQCTTRDIAGHL"
gene 2702..4147
/gene="E2"
/locus_tag="HpV115gp4"
CDS 2702..4147
/gene="E2"
/locus_tag="HpV115gp4"
/codon_start=1
/product="early protein E2"
/protein_id="ACZ58406.1"
/translation="MEALNDRFNALQETLLDIYESGKDDIDTQILHWNCLRKEQILLH
YARKHGIRRVGYQHVPPLAVTETKAKEAIGMVLVLESLKKSPYGSESWTLVNTSLETY
RTPPSNCFKKGPSNIEVRYDNDPENIMHYTVWDCIYFQNADEQWEKVKGHVDYMGAYY
MDGEQKQYYIHFADDAARYSKTGIWEVRSNEETLFAPVTSSTPPGGEQGVGVPTSSTD
ASASPATTTSAATTTYGTTREDRGQQQQQQKAKRGRYGRKASSPTGSTTSPRKAAQGT
RSRSRNRRRKTQGSKHRSGRKRSSRDSSRSSNSRSSRKRARSPRGGSGRRSSSSTASK
RARSRSQTPRRGKSGSRSRSRSKSKSRHSEGGGVSPSEVGRDLQTVSGRHLGRLEQLL
ADARDPPIILFKGAANTLKCYRYRERQRLKGFYKWFSTTWSWVGSEDCTRIGRARMIV
SFTSYSQRQEFTNRMKIPKGVDWCFGNFDKL"
gene 3270..3902
/gene="E4"
/locus_tag="HpV115gp5"
CDS 3270..3902
/gene="E4"
/locus_tag="HpV115gp5"
/codon_start=1
/product="early protein E4"
/protein_id="ACZ58407.1"
/translation="MKKLCLLLLLVPHHRGVSKESESPPHPPTPAPHRPPPPVQPPPP
TGPPERIEDSNNSNKKPSEEGTDGKPLALQDPPHRPEKRHKGQGHDPETGDGKRRGLS
TDQGENGLPATAPDPPTPDPPESGRDPLGEGQVEGHPPPLPPNGHDPDHKPQGEENQG
PDPDPDQNQNHGILKGAAYHLQRWEETYKQLVEDILDDLSNYWQMLGIPQ"
gene 4185..5741
/gene="L2"
/locus_tag="HpV115gp6"
CDS 4185..5741
/gene="L2"
/locus_tag="HpV115gp6"
/codon_start=1
/product="late protein L2"
/protein_id="ACZ58408.1"
/translation="MVRARRVKRDSVTNIYRGCKAAGTCPPDVLNKVEQTTIADQILK
YGSAGVFFGGLGISTGRGTGGSTGYVPLGEGPSVRVGGTPSIIRPSVIPETIGPADII
PIDTVNPIDPTASSVVPLTESTGPDLLPGEIETIAEIHPVPEVRPVDTSVTTNTRGSS
AVLEVAPEPVPPTRTRISRTQYHNPSFQIISESTPSTGESSLADHIIVTSGSGGQQIG
GPRIEIELEEIPSRYSFEIEEPTPPRRSSTPVSAARRALGAIRRGIYNRRLTQQINVT
DPLFIQQPSRLVRFQFDNPAFEEEVTQIFDRDINEIEEPPNRDFLDIARLSRPLFSET
PQGYVRVSRLGNRATIRTRSGATIGSQVHFYQDLSTIDNVESMELSLLGEHSGDASIV
QGPVESTFVEANLDEIPELSEEPDFNSEDLLLDEHTDHFSDSQLVFGTGRRTVSYTIP
RFETPRSDTIFLENVQGYTVAYPERRDRPEIIYPMPDLPAVVIHIYDDSGDFYLHPSL
KKRKRKRAYL"
gene 5755..7293
/gene="L1"
/locus_tag="HpV115gp7"
CDS 5755..7293
/gene="L1"
/locus_tag="HpV115gp7"
/note="late protein"
/codon_start=1
/product="major capsid protein L1"
/protein_id="ACZ58409.1"
/translation="MTLWLPATGKVYLPPSTPVARVQSTDEYIQRTDIFYHANSDRLL
TVGHPYFEVRATTEPYQVTVPKVSGNQFRAFRLKLPDPNRFALVDTTVYNPDKERLVW
ACRGIEIGRGQPLGVGSTGHPLFNKVKDTENPTGYITNSKDDRQDTSFDPKQVQMFII
GCTPCWGEHWDIAPRCDDDQPIQGACPPLELRNTIIEDGDMVDIGFGNINNKTLSVTK
SDVSLDIVNSTCKYPDFLKMANDIYGDAWFFYARREQCYARHFFVRGGAVGDAIPDAA
VQQDNNYFLPAAGDQAQKTLGSSIYVPTVSGSLVSSDAQLFNRPFWLQRAQGHNNGIC
WENQLFVTVVDNTRNTNFTISVSSTDQAPTEHNASNTPNFREYLRHVEEYELSVILQL
CRVPLQPDILAHINAMNSNILEEWQLGFVPTPENPIQDTYRYINSAATRCPDKNTPKE
KEDQYAKFNFWTVDPTEKLSLDLDQYSLGRKFLYQAGLKRSATPKTTTARNTVTRGVK
RKRT"
ORIGIN
1 gcgggtaagt cttggcgcga agaagtgctg tcagcaattt ggcacaatag ttcaaccagt
61 aacggtaagg acttgtaccg ggtgcggttg ggaagtatta ttcattgcca tggtggttaa
121 caacaatcag cataatccat tacatgtaac cgcttgtgta tatttgtata aaagaatata
181 taaattgggg attatagtac ttgggtaata cacatggcta ggccaggcag ggttgtagag
241 cttagtggct acttgcaaat accagtagga gatttattgt tgccatgtaa tttctgtggt
301 aaatttttaa catttgctga gttattagaa tttgattata agaatttacg ccttatttgg
361 aaaaatgcat tagtgtttgg gtgctgcaca gtgtgcgctt ttgctacagc catttatgaa
421 ttgcgaacct ttcatcaaga aacagtaaca ggttgtgagt tagaaggacg agcacaggct
481 ccactagcaa gtgttgttgt aaggtgtaca ttttgtttga agcaattaga tttgttagag
541 aagttagata tttgtgccag acatcaagag ttccacagag tgagaaatca ttggaaaggg
601 ctctgtaggc attgtagaac aatagaatga ttgggaaaga agcaacaata catgatatag
661 tcttagaaga cttaaatgag cttgtccagc ccattgacct gcattgcaac gaagagttac
721 ctgatgaaca agaagaagag gaggagctag cacctgacag aacacctttc aaagtgattg
781 tgtattgtgg aggcagttgt ggaaccaaac ttcgcatctt tcttctctct acaacgtatg
841 gtattcgatt attggaagac ctgctcttaa acgaacttgc cctgctgtgt cctcagtgtc
901 gcgacaggat tcgccatggc ggaggataga ggtattgatc ctattgaagg gtgtagtggt
961 tggtttattg atgatgaagc tgagtgtagt gatttagaga atgagttgga aaaattgttt
1021 gatgaagaag cctcagagac agatttatct gatttcttag atgatgggga gacggaacag
1081 ggaaactccc gagacttatt tcatcaacag gagagtgctg agtgcgagga acaagtgcaa
1141 ttcctaaaac gaaagtattt cagtcctaaa gctgtacaac agcttagtcc gcggttgcag
1201 gctatttcgt tgtctccaca acaaaaatca aaaaagcggc tgtttgttga gcaggacagc
1261 ggtgttgaac tgtcgggcct tgaacgatct gttaataatg aagctgaaga tgtggctccg
1321 gaggtggagg taccggctgc agcgccggtt gtccaggggg aggagggggg acatgcacaa
1381 actgcaaacc tgataaagga cctgttaaaa tgtagtaatt ggcgtgccaa actgttaagt
1441 aaagtgaaag aatattttgg ggtagggttt tatgaattaa ccaggcaata taaaagtaat
1501 aagacatgct gtaaagattg ggtcgtggct atttatggtg ttagagaaga gttattagaa
1561 ggatgtaagc agttgctaca gcaatactgt tcatatattt ggatttatat aaatggtata
1621 atgtcattgt tcctactatg tttcaatagt gtaaaaagta gggatacagt gtgtaaatta
1681 ttgatgtcta tattggatgt gcaaaaggag caaatgttat cggaaccacc aaaattaaga
1741 agtcccgtgt cagcaatata ttggtataag ttaagcatgg ataaatctgt ttatgcattt
1801 gggacatatc ctgattggat agtaaatcag accatgataa ctcaccaatt cggtgacgcc
1861 gcacaatttg acctctcaca aatggtgcaa tgggcattcg ataataatct tatagacgat
1921 gcagatatag cgtatagata cgcaaaatta gcagacagtg attcaaatgc aagggcttgg
1981 ttagcacaca atagtcaggc aagatttgtc aaagaatgtg cagccatggt aagacattat
2041 aaacgtggtg aaatgaggga tatgtccatg tctgagtgga tcaatcatgt aatgcaaacg
2101 gtggaagggg aaggccactg gtctgagatt gtaaaattta tacgatttca aggtattaat
2161 tttatactat ttctggaggc ctttaagcat ttcatacagg gtacacctaa aaagcaatgt
2221 ttattaatct atggaccgcc ggattgtggg aaaacaatgt ttacaatgtc attactaaaa
2281 tttatgaggg gtcgagtaat ttcatttgct aattccaaaa gtcatttttg gttacaaccc
2341 ttaggtgaat gtaaattagg tttattagat gatgcaacgg aaccttgctg gacatatata
2401 gatttgtatt taaggaatgg tattgatggt aatcttgtta gtgtagattg caaacacaaa
2461 gcaccaatgc aaataaagtt tccaccttta ctaataacgt ccaatatgga tataaccaag
2521 gaggagaggt ttcgatactt acacaccaga atcaaaggtt ttgaatttaa gcataaattc
2581 ccatttaatg ctgatggcac cccacagttt ttacttactg accaaagctg gaaatctttc
2641 tttacaaggc tttggaaaca attagatctc agtgatccag aagacgaggg agaggaggac
2701 aatggaggca ctcaacgatc gtttcaatgc actacaagag acattgctgg acatttatga
2761 atcaggaaaa gatgacattg atacacaaat attacattgg aactgcttaa gaaaggaaca
2821 aattttatta cattatgcca ggaaacatgg cataaggaga gtgggctacc aacatgtccc
2881 acctttggca gtgacagaaa ctaaagcaaa agaagcaatt ggcatggtgt tagtgttgga
2941 aagtttaaaa aagtctccat atggaagtga atcatggact ttagttaaca cgagccttga
3001 gacatataga acacctcctt ccaattgctt taaaaaagga ccttctaata ttgaagtgcg
3061 ctatgataat gaccctgaaa acattatgca ctacacggtg tgggattgta tatactttca
3121 gaatgctgat gaacagtggg aaaaggtcaa agggcatgtg gactatatgg gggcctacta
3181 tatggacgga gagcagaagc agtattacat acactttgct gatgatgctg ctagatacag
3241 taaaacagga atatgggaag taagatctaa tgaagaaact ttgtttgctc ctgttactag
3301 ttccacacca ccggggggtg agcaaggagt cggagtcccc acctcatcca ccgacgccag
3361 cgcctcaccg gccaccacca ccagtgcagc caccaccacc tacgggacca ccagagagga
3421 tagaggacag caacaacagc aacaaaaagc caagcgagga aggtacggac ggaaagcctc
3481 tagccctaca ggatccacca catcgcccag aaaagcggca caagggacaa ggtcacgatc
3541 cagaaacagg agacggaaaa cgcaggggtc taagcacaga tcagggagaa aacggtcttc
3601 ccgcgacagc tcccgatcct ccaactccag atcctccaga aagcgggcga gatcccctag
3661 gggagggtca ggtagaaggt catcctcctc cactgcctcc aaacgggcac gatccagatc
3721 acaaacccca aggagaggaa aatcagggtc cagatccaga tccagatcaa aatcaaaatc
3781 acggcattct gaagggggcg gcgtatcacc ttcagaggtg ggaagagact tacaaacagt
3841 tagtggaaga catcttggac gacttgagca attattggca gatgctaggg atcccccaat
3901 aatacttttt aaaggtgcag ctaacacatt gaaatgctat cgctataggg aaaggcaaag
3961 gttaaaaggg ttctataagt ggtttagcac aacatggtcc tgggtagggt cagaagactg
4021 cactcgcatt ggcagggctc gcatgatagt tagtttcaca tcatattcac aaagacaaga
4081 attcacgaac agaatgaaaa tacctaaggg tgtggactgg tgttttggta attttgacaa
4141 gttataacta accttgtttg ctattttact aaccttatac taacatggta cgggcacgtc
4201 gtgtaaaacg tgactctgtt actaacatat atagaggctg taaagcggct ggtacttgtc
4261 cacccgatgt actcaataaa gtggaacaga ctactattgc tgaccaaatc ttaaaatatg
4321 gcagcgctgg tgtgtttttt ggcggcctgg gcatcagcac cgggcgtgga accggaggca
4381 gcacagggta tgtaccactt ggcgaaggac ccagcgttag agttgggggt acgccaagta
4441 taattcgccc cagcgtcata cccgaaacaa ttggtccagc cgatatcatt ccaattgaca
4501 ctgtcaatcc aattgacccg acagcatcat ctgtggtccc actcacagaa agcacaggac
4561 ctgatttgtt gcctggggaa attgaaacaa tagctgaaat acatcctgta cctgaagtaa
4621 gacctgttga cacatctgtg acaaccaaca ccagaggttc tagtgcagtt cttgaggtgg
4681 cacctgaacc agtacctcca acgagaacta gaattagtag aacccaatat cataaccctt
4741 cttttcaaat tattagtgaa tctacacctt ccacaggcga gtcttcatta gctgatcaca
4801 ttattgttac cagtggctct ggtggacaac aaataggtgg cccacgtatt gaaatagaat
4861 tagaagagat accaagtaga tatagttttg aaattgagga acccacacca ccacgacgct
4921 caagtacgcc tgtgtctgca gcacgccgag cgttaggtgc tatacgcaga ggtatatata
4981 ataggaggct tacacagcaa atcaatgtta cagacccact atttatacag cagccatcta
5041 ggttggttag atttcaattt gataatccag catttgaaga ggaagttaca caaatatttg
5101 atagagatat taatgaaatt gaagagcctc ctaataggga tttcctagat atagctaggt
5161 taagtaggcc tttatttagt gaaacaccac agggttatgt gagggtaagt cgattaggta
5221 atagggcaac tataagaaca cgtagtggag caacaattgg gtcacaggtt catttctatc
5281 aagatcttag cactattgat aatgtggaat ccatggaact ctcattatta ggagaacatt
5341 ctggggatgc aagtatagtt caagggccag tagaaagtac atttgtagaa gccaatctag
5401 atgaaattcc tgaattgtct gaggaacctg actttaattc tgaggatttg ttattggatg
5461 aacatactga ccattttagt gattcccagt tagtctttgg cacaggtcgc aggacggtta
5521 gttacacaat accacgattt gaaacacctc gcagtgacac tatttttttg gaaaatgttc
5581 aaggatatac tgtagcctat cctgaacgca gagacaggcc tgaaatcata tatcctatgc
5641 cagacttacc agcagtggta attcacatct atgatgattc tggggacttt tatttacatc
5701 caagcctaaa aaagaggaaa cgtaaacgag cctacttata atattctttt tcagatgact
5761 ctgtggttac ctgcaaccgg taaagtatat ctaccaccat cgaccccagt tgcaagggta
5821 caaagcacgg atgagtacat acaaaggact gacatctttt accacgctaa tagtgatcgg
5881 ttacttacag taggacatcc atactttgag gttcgagcca caacagaacc atatcaggtg
5941 acagtaccta aagttagtgg aaatcagttt agagctttca gacttaaatt acctgatcct
6001 aataggtttg cattggtaga tactacagtg tataatcctg acaaggaaag attagtctgg
6061 gcttgtagag gtattgaaat tggaaggggc caacctttgg gtgttggttc tacaggtcat
6121 ccattattta ataaggtaaa ggatactgag aatcctactg ggtacattac caattccaag
6181 gatgacagac aagatacatc ctttgatccc aaacaggtac aaatgtttat aattggctgt
6241 accccttgct ggggagagca ttgggatatt gctccacgct gtgatgatga tcaacctatc
6301 caaggggcct gtcctccatt agaattaaga aatactatta ttgaggatgg cgatatggta
6361 gacataggtt ttggtaatat aaataacaaa actctttcag tgaccaaatc agatgtcagt
6421 ttagatatag taaacagtac ctgtaaatat cctgactttc tgaagatggc aaacgacatt
6481 tatggagatg cctggttttt ttatgcacga agggaacaat gctatgctag acactttttt
6541 gttcgtggtg gtgctgtggg agatgctatc ccagatgcag ctgtacaaca agataataat
6601 tactttttgc cagctgcagg agaccaggct caaaagacat taggtagttc tatttatgtg
6661 cccactgtaa gtggctcttt agtgtcttct gatgcacagc tatttaatag gcctttttgg
6721 ttacaaaggg cacaaggaca caacaatggc atatgctggg aaaatcagct ttttgtcact
6781 gttgtagata acacacgcaa tactaacttt acaattagtg tgtcttccac tgatcaagca
6841 cctacagagc ataatgctag taatactcct aattttaggg aatatttaag acatgtagag
6901 gaatatgagc tctctgtcat tttacaactt tgtagggtgc ctttacaacc agacatattg
6961 gcacacataa atgcaatgaa ttctaatatt ttagaagagt ggcagttggg gtttgttccc
7021 acccctgaaa atcctataca ggatacctac agatatatta actcagcagc cacacgttgc
7081 cctgataaaa acaccccaaa agaaaaggaa gatcaatatg ctaagtttaa cttttggact
7141 gttgacccaa cagaaaaatt gtccttagat ttagatcaat actctttagg acgtaagttt
7201 ttatatcagg caggcttgaa acggtctgct acacctaaaa ccacaacagc tcgcaacact
7261 gtcactcgag gggttaaacg aaaacgtaca tgaccgcttt cggtatctgt ataaaggtta
7321 ataaattttt tgaaacccct ttggtatgtg aagcatgttt taaccacgtt cgtgactaca
7381 ccggaatgga tcatgccaac cgcgcccggt tgatcagata taaatctcca ggtgcaactt
7441 agaagttcag ccagaagtgt ctgccaaccg cttttg
//
