LOCUS GU117630 7388 bp DNA circular VRL 25-JUL-2016
DEFINITION Human papillomavirus type 130, complete genome.
ACCESSION GU117630
VERSION GU117630.1
KEYWORDS .
SOURCE Human papillomavirus 130
ORGANISM Human papillomavirus 130
Viruses; Monodnaviria; Shotokuvirae; Cossaviricota;
Papovaviricetes; Zurhausenvirales; Papillomaviridae;
Firstpapillomavirinae; Gammapapillomavirus; Gammapapillomavirus 10.
REFERENCE 1 (bases 1 to 7388)
AUTHORS Kohler,A., Gottschling,M., Manning,K., Lehmann,M.D., Schulz,E.,
Kruger-Corcoran,D., Stockfleth,E. and Nindl,I.
TITLE Genomic characterization of ten novel cutaneous human
papillomaviruses from keratotic lesions of immunosuppressed
patients
JOURNAL J. Gen. Virol. 92 (PT 7), 1585-1594 (2011)
PUBMED 21471318
REFERENCE 2 (bases 1 to 7388)
AUTHORS Koehler,A., Schulz,E., Gottschling,M., Bravo,I.G., Stockfleth,E.
and Nindl,I.
TITLE Isolation and characterisation of nine novel human papillomavirus
types associated with cutaneous warts
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 7388)
AUTHORS Koehler,A., Schulz,E., Gottschling,M., Bravo,I.G., Stockfleth,E.
and Nindl,I.
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2009) Clinic for Dermatology, Venerology und
Allergology, Haut Tumor Centrum Charite (HTCC), Charite -
Universitaetsmedizin Berlin, Chariteplatz 1, Berlin 10117, Germany
FEATURES Location/Qualifiers
source 1..7388
/organism="Human papillomavirus 130"
/mol_type="genomic DNA"
/isolate="24-43"
/isolation_source="wart"
/host="Homo sapiens"
/db_xref="taxon:909329"
/country="Germany"
/collected_by="Anja Koehler"
/identified_by="Anja Koehler"
gene 1..432
/gene="E6"
CDS 1..432
/gene="E6"
/codon_start=1
/product="E6"
/protein_id="ADQ85950.1"
/translation="MDTFLSPTPVSITAYCSTFGFTLEQVRIPCKFCKGYLNVQDCAA
FDLKKFRLLWKNGFCFACCRSCMRLSAAFESSHFKQCICNCNFVVDLVQKPLREIPMR
CIECLAFLDYSEKIQHLLLNENFTLVRSNWRGYCRNCIRKE"
gene 434..730
/gene="E7"
CDS 434..730
/gene="E7"
/codon_start=1
/product="E7"
/protein_id="ADQ85951.1"
/translation="MIGPDIQVGDIELQLEELVMPANLLSDEVLSPDEDEEEELQIQP
YKIDSRCKVCNSSVRLFVAASDQGIRRLQQLLFADLSFICTPCSRVTCRQNGRQ"
gene 717..2546
/gene="E1"
CDS 717..2546
/gene="E1"
/codon_start=1
/product="E1"
/protein_id="ADQ85947.1"
/translation="MGDNKPGTKNIELLEGCSDWYLVEEAECTDSLDTLNDLEELFDN
SDGSNISDLIDDFDEVDQGNSLELFNQQITEDCNKAIAELKRKYATPSPKKNLCANVD
LSPRLQSVSISSKTSSKRRLFRDSGIEENEAEDSVEEQVESGRTNNDAGKNGGNGLLQ
LLQTKTNKPALLGKFKEVFGVSYKEIIRPFKNDKTMCEMWVVVVYAAKDELLESSKLL
LEQHCLFILQKNYEFLCMYLLQFITNKCRDTVQKLMCSLLNVNECQLLCDPPKHRSTA
AALFYYKCTTGNASYTKGTLPDWISNKLLVDHQAAASSDMFDFSEMVQWAFDHNFTEE
CTIAYEYALLASECANAAAWLNHNNQAKYVRDCAYMCRLYKRQEMKEMTMSQWIWKCC
KKYEGEGDWKAIPLFLKYQEVNFISFLAALKPFLKSTPKQNCILFHGQPDTGKSYFVF
SLIEFLQGKVVSFMNSKSHFWLQPFVECKIGLIDDVTYSCWTFMDEHMRTGLDGNTIS
IDSKHKAPIQMKLPPLLLTSNIDLHKENTLMYLHSRVKSFQFNKKMPLDENGEPVYKI
SHLTWKYFFMKLARQLELTPDDEGNGEIERPLRCSTRSPVESI"
gene 2488..3672
/gene="E2"
CDS 2488..3672
/gene="E2"
/codon_start=1
/product="E2"
/protein_id="ADQ85948.1"
/translation="MEKLKDRYDAVQEALLNLYEHASNDIDTQIKHWELTRQENAILY
VARQKGLKSLGMHPVPSLATSENKAKDAIKMHLLLKSLKDSPFGNETWSLTETSLELL
NTPPKNCFKKRGYTVDVLYDRDEDKVYPYTAWEQIYFQDEQNMWHKTHGAVDYYGLYF
YDVNGYKVYYVKFDDKAKTLSVTGEWEVRYKNKTISPSVTSSSSPSSSWKSSSELGTS
SKYSETDQEIVRRPKEKPEGRTGDAGQSPPNLRHSRRGREGELGTTGGSPAKRRRAEA
PDSTGSAVPTAQQVGSRHRSVGRGHLSRLERLQKEAWDPPIIIVKGCANTLKCWRFRC
KNNKSRKLYEYATTVFRWVDLDNNSRMLFAFKDTQQRELFLDSVTLPKGTEVALGSLG
SL"
gene <3038..3439
/gene="E4"
CDS <3038..3439
/gene="E4"
/note="start site not determined"
/codon_start=1
/product="E4"
/protein_id="ADQ85949.1"
/translation="ENGRLDIKTKLFLHLLPPAPLLPPPGSLPRSLGLPPNTPKLTRR
SSDDLRRNLRAGLGTPVSRRLTFDIAEEDEKENLEPPEEVQRSEDEQKPLTPPDLLSQ
LLSKWGHAIDQLAEDILVDLRDYKKRLGIPQ"
gene 3674..5251
/gene="L2"
CDS 3674..5251
/gene="L2"
/codon_start=1
/product="L2"
/protein_id="ADQ85953.1"
/translation="MNESSRSRRTKRDSVKNIYEHCRISGNCPDDVKNKVEGTTLADR
LLQWLGSVIYLGGLGIGTGRGSGGSTGYTPLGRNPTVSSSGSVVRPTIPLDPLGPTNI
LPIDVVDPAGPAIVPLTEGGVPDVTIIDAGGPSVDVAIEGPDLGAGEVAIITEPDPIS
DVGATGGHPTVSTTEDNAAVIDVQTGPPVPKRMAFDRRPLSSTPTHISVTQSFTNISD
PGNIFVDAHFDGQIVGESIPLQPIRPFEEFEIEEPTDVPRSSTPRAFARAYARARDLY
NRRVQQVQTRNIEFLRRPSRLVQFEISNPAFEEEDITLQFEQDVQQLAAAPDTDFTDI
ISLGRQRIAETAEGRVRVSRLGRRGTIRTRSGLQIGQQVHFYYDLSNIESAEAIELGV
LGEHSGDTSIINSQTESSFINLLADEPEAYNDEELLDSLVEDFSISHVVLTSSRRNLS
MTMPTIPPGVALKIFVTDIGKPLFVSYPQTHIIPNLLPETPTSNIEPAIIIDLESAND
FLIHPSLLKRKRKRPLL"
gene 5262..6824
/gene="L1"
CDS 5262..6824
/gene="L1"
/codon_start=1
/product="L1"
/protein_id="ADQ85952.1"
/translation="MSLLWMQSPGKIYIPPSKPVARILNTEEYIKDTNIYFHGGSERL
LTVGHPYFEIENQDKTKIEVPKVSGNQYRVLRVLLPDPNKFALVDSTVYNPETQRLVW
RLKGLEIQRGGPLGIGTTGHPLFNKLGDTENPTKYLTQSTDDRQNVSMDPKQTQLFIV
GCTPSLGAHWDLAKPCVEDEGKRQNGDCYPIELVHTVIQDGDMGDIGFGAVNFKAFQQ
DHSGVPLDIVASTCKWPDFVKMTKEPYGNSMFFYGKREQLYVRHNFVRAGTVGDAIPD
PFTTKSDYLTQPDTSQNQKTISSHIYFGTPSGSLVSSEATLFNRPYWLQRAQGQNNGI
LWGNQAFITILDNTHNTNFTLNFYKEAAKVPDSYKYKAEDFKHYLRHVEEIEFEIILQ
LCIVPLEPDVLAHINAMNSSILEDWNLAFVPQPAISIEDKYRYITSLATPCPDQIQNK
EKEDPYAQYNFWIVDLTERLSSELSQFSLGRRFLYQTGLVTNGNGVVNPRKRRVAPSN
KSVKRRKTVKVV"
ORIGIN
1 atggacacct ttctatcacc aactcctgtt tctataacag catactgctc tacatttgga
61 tttactcttg aacaagttag aattccttgt aaattttgca aaggctactt aaatgtacaa
121 gattgcgctg cttttgattt gaaaaagttt agattactat ggaaaaatgg attttgtttt
181 gcttgctgta gaagttgtat gaggctttca gctgcctttg agagcagtca ttttaaacaa
241 tgtatttgta attgcaattt tgtagttgat ttagttcaga aacctttaag agaaatacct
301 atgagatgca ttgaatgttt agctttcttg gattatagtg agaaaataca gcatttgctt
361 ttaaatgaaa attttacttt ggtaagaagc aattggagag gatactgtcg caattgtata
421 agaaaggaat aagatgattg ggcctgacat tcaggtgggt gacattgaat tacaattaga
481 ggagttggtc atgcctgcta atctacttag tgacgaagtt ttgtcaccag acgaggacga
541 ggaggaggag ttacaaatac agccctataa aatagattca aggtgcaaag tgtgcaattc
601 ttcagtgaga ctgtttgttg ctgctagcga tcaaggaatt agaagacttc agcaattgct
661 ttttgcagat ttgtctttta tctgcacgcc gtgctccaga gtcacctgtc gtcaaaatgg
721 gagacaataa accaggtacc aaaaatatag aattattaga aggctgtagt gactggtatt
781 tagtggaaga agcagaatgt actgatagtt tggacacgtt aaatgatttg gaggaactct
841 ttgataatag tgatgggtct aatatttcag atttaataga tgattttgat gaggtggatc
901 aggggaattc cctggagctg ttcaatcagc aaataactga agattgcaac aaagccatag
961 ctgaactaaa acgaaagtat gccactccaa gtccaaaaaa aaatttgtgc gcaaacgttg
1021 atctcagtcc acgtttgcag tcagtgtcca tttcttcaaa aacaagcagt aaaagacgat
1081 tatttcgaga cagtggcata gaggaaaatg aagctgaaga ttctgttgag gaacaggtag
1141 aatctggacg cacaaacaat gacgcgggca aaaatggcgg gaatggtttg ttgcagcttt
1201 tgcaaactaa aactaacaaa cctgctttgc taggaaaatt taaagaagtg tttggagtat
1261 cttataaaga aattataagg ccatttaaaa atgataaaac tatgtgtgaa atgtgggttg
1321 ttgtagtata cgcagcgaag gatgaacttt tagaaagctc taaacttctt ttggaacagc
1381 attgtttatt catattgcag aaaaattatg agttcttatg catgtacctt ttacaattca
1441 taaccaacaa gtgcagggat acggtgcaaa aacttatgtg ttcattgttg aatgttaatg
1501 aatgccaatt gctatgtgat ccaccgaaac atagaagtac tgcagcagct ttgttttatt
1561 ataagtgtac cacaggtaat gcgtcctata ctaaagggac actacctgat tggatatcta
1621 ataagttgct tgttgatcat caagcagcag caagtagcga tatgtttgat ttttcagaaa
1681 tggtacaatg ggcatttgat cacaatttta cagaagaatg tacaatagca tatgaatatg
1741 cattattagc atcagaatgt gccaatgcag ccgcatggtt aaatcacaac aatcaggcta
1801 aatatgttag agattgtgct tatatgtgca ggctatataa aaggcaggaa atgaaagaaa
1861 tgacaatgtc acaatggata tggaaatgtt gtaaaaagta tgaaggagag ggagattgga
1921 aagctatacc tctattttta aaatatcaag aggtaaattt tatttcattt ttggcagctt
1981 taaagccatt tcttaaaagt actcctaaac aaaattgtat actttttcat gggcagcctg
2041 atacaggcaa atcttatttt gtgttctctt taattgagtt tttgcaagga aaagtagttt
2101 cctttatgaa tagtaaaagt cacttttggt tacaaccttt tgtagaatgt aaaatagggt
2161 tgattgatga tgtaacttat tcttgctgga cttttatgga tgagcatatg agaacagggt
2221 tggatggtaa tactatatct atagattcta aacataaagc tcctatacaa atgaaattac
2281 caccattatt attaacatca aatatagatt tgcataaaga aaatacctta atgtatttac
2341 atagtagagt caagtcattt caatttaata agaaaatgcc tttagatgaa aatggtgaac
2401 ctgtatataa aatatctcat ttgacatgga aatatttttt tatgaagctt gccaggcagt
2461 tagaactgac accagacgac gagggcaatg gagaaattga aagaccgcta cgatgcagta
2521 caagaagccc tgttgaatct atatgaacat gccagcaatg atattgatac acaaataaaa
2581 cattgggaat taactagaca agagaatgct attttatatg ttgctagaca aaagggatta
2641 aaaagtttag gcatgcatcc agtgccttct ttggcaactt cagaaaataa agcaaaagat
2701 gcaataaaaa tgcatttgtt gttaaagtct ttgaaagact caccctttgg taatgagaca
2761 tggtcattaa cagaaacaag tttagaattg ttaaatactc caccaaaaaa ttgctttaaa
2821 aaaagaggtt atactgttga tgtattgtat gacagagacg aagataaagt gtatccttac
2881 actgcttggg aacaaatata ttttcaagat gaacaaaata tgtggcataa aacacatgga
2941 gcagtggact attatggatt gtatttttat gatgtaaatg ggtataaagt gtactatgta
3001 aaatttgatg ataaagcaaa gacactttca gtaactggag aatgggaggt tagatataaa
3061 aacaaaacta tttctccatc tgttacctcc agctcctctc cttcctcctc ctggaagtct
3121 tcctcggagc ttgggacttc ctccaaatac tccgaaactg accaggagat cgtcagacga
3181 cctaaggaga aacctgaggg ccggactggg gacgccggtc agtcgccgcc taaccttcga
3241 catagcagaa gaggacgaga aggagaactt ggaaccaccg gaggaagtcc agcgaagcga
3301 agacgagcag aagcccctga ctccaccgga tctgctgtcc caactgctca gcaagtgggg
3361 tcacgccatc gatcagttgg cagaggacat cttagtagac ttgagagact acaaaaagag
3421 gcttgggatc ccccaataat tattgtaaaa ggttgtgcta atactttaaa atgctggaga
3481 tttcgttgta aaaataacaa aagtagaaaa ttatatgaat atgcaacaac tgtgtttagg
3541 tgggtagact tagataataa cagtagaatg ctttttgctt ttaaagatac gcagcaaagg
3601 gagctgtttt tagactctgt cacattacca aagggaacag aagttgcatt ggggtcactg
3661 ggtagcttat aaaatgaatg aatccagtag aagtagaaga acaaaacgtg attctgtaaa
3721 aaatatatat gaacactgta gaatttctgg taattgtcct gatgatgtta aaaataaagt
3781 agaaggcact actttggcag atcgattatt gcaatggttg ggaagtgtaa tatacttggg
3841 tggtttgggt ataggcactg gtaggggtag tgggggaagc actggatata caccattagg
3901 tagaaatcct actgtaagct cttctggatc tgttgtaaga ccgacaatcc cattagaccc
3961 tttgggaccc actaatattc ttcctataga cgttgtagat ccagctggcc cagcaatagt
4021 gccccttact gaaggaggtg ttcctgatgt cacaataatc gatgcaggag gtccatctgt
4081 ggatgttgct atagaaggcc ctgatttagg tgcaggtgaa gttgctatta tcacagaacc
4141 agacccaatt tcagatgtag gcgcaactgg tgggcatcct acagttagta ccactgaaga
4201 caacgctgca gttattgatg tgcagacagg cccacctgtt ccaaagcgaa tggcatttga
4261 tagacgtcca cttagttcca cacctaccca tattagtgta actcaatcat ttacaaacat
4321 ctctgatcct ggaaatatat ttgtagatgc acattttgat ggtcaaattg taggagaaag
4381 tattccttta caacctataa gaccatttga ggaatttgaa attgaggaac caacagatgt
4441 ccctagaagt agtaccccaa gagcatttgc aagagcatat gctcgagcac gtgatttgta
4501 taacagaaga gttcaacaag ttcaaactag aaatattgag tttttaagac gtccttcccg
4561 ccttgtacaa tttgaaattt ctaatcccgc ctttgaagag gaggacataa ccttacagtt
4621 tgagcaggac gtgcaacaat tggctgcagc gcctgacaca gattttacag atattatcag
4681 cttaggaaga caaagaattg ctgagactgc agagggcagg gttagagtta gtaggcttgg
4741 tagacgaggt actataagaa cccgtagtgg tttgcaaatt gggcagcaag tgcattttta
4801 ttatgattta agtaatatag agagtgcaga ggctatagaa ttaggtgttt taggggaaca
4861 ttctggagat acatctataa tcaattctca aactgaaagt agctttatta atttgttagc
4921 agatgaacca gaagcttaca atgatgagga actattagac agtttagttg aagatttcag
4981 tatttcacat gttgtactta catcttccag aagaaacctt agtatgacta tgcctacaat
5041 tcctcctggt gtagctctaa agatttttgt gacagatata ggaaagcctc tatttgtttc
5101 gtatccccaa acacatatta taccaaatct gcttccggaa actccaacat ctaatattga
5161 gccagcaatt attatagact tggaatcagc taatgatttt ttaatacatc caagtttact
5221 gaaacgcaaa cgcaaacgtc ctttattgtg atttcttaca gatgtcatta ctttggatgc
5281 aaagtcctgg aaaaatttac atacctccca gcaaaccagt cgccagaatt ctcaacactg
5341 aagaatatat taaggacact aatatttatt ttcatggtgg aagtgaaaga ttgttaactg
5401 ttggtcatcc ttattttgaa attgaaaatc aggacaaaac taagattgag gttcctaagg
5461 tttctggaaa tcagtataga gttttaaggg tacttttacc agatccaaat aaatttgctt
5521 tggttgattc tacagtatat aatccagaaa ctcaaagatt agtttggaga ctaaaaggtt
5581 tagaaattca aagaggaggt cctttaggaa ttgggactac aggccatcct ttatttaata
5641 aattaggaga tacagaaaat cctactaagt atttaacaca aagtacagat gataggcaaa
5701 atgtttctat ggatcctaaa cagacacaac tatttatagt aggttgtaca cccagtttag
5761 gtgctcactg ggatcttgca aaaccatgtg ttgaagacga agggaaaaga caaaatggag
5821 attgttatcc tatagaatta gtacacacag ttattcaaga tggagatatg ggtgacatag
5881 gttttggtgc tgtgaatttt aaagcatttc agcaagacca ttcaggtgtg ccattagata
5941 ttgtggcatc aacttgtaaa tggcctgact ttgtaaaaat gactaaagag ccttatggaa
6001 actctatgtt tttctatgga aaacgtgaac aattatatgt cagacataac tttgttaggg
6061 caggaacagt tggtgatgct ataccagacc cttttacaac taaaagtgat tatttaactc
6121 agccagacac cagtcaaaat cagaaaacta tttcttctca tatatacttt ggaacaccaa
6181 gtggatcttt ggtatctagt gaagctacat tatttaatag gccgtactgg ttacagagag
6241 ctcaaggtca aaataatgga atattgtggg gaaatcaagc ttttataact attcttgata
6301 acactcacaa taccaatttt accttaaatt tttataaaga agcagctaaa gttccagaca
6361 gttacaagta taaagcagag gattttaagc attatctgcg tcatgttgaa gaaattgagt
6421 ttgaaattat attacagctt tgcatagtac ccttagaacc tgatgtatta gcacacatta
6481 atgcaatgaa ctcttctatc ttagaagatt ggaatttagc ttttgtacct caaccagcta
6541 taagcataga ggataaatat agatatatta cctctttagc tacaccttgt ccagatcaaa
6601 ttcaaaataa ggaaaaggag gatccttatg ctcagtataa tttctggatt gtagacttga
6661 cagagcgtct ttcttcagaa ctgtctcagt tttctctagg tagacgattt ttgtatcaaa
6721 caggccttgt aaccaatgga aatggtgttg taaaccccag aaagaggcgt gtagcccctt
6781 ctaacaaatc tgtgaaacgt agaaaaactg tgaaagttgt gtagcaacta gtataaacat
6841 ttctcagatt atgctgtgaa acttactgta aactgccaag ctgtgaatgc caaaaatgct
6901 gctacaagtt taagacatgt tgaagtgata tagatatgtt ctatttaaaa taaaattgca
6961 tacgttgcaa tcaatagttc attacatttc tttgagtcat gtgtggcaca tttcctttac
7021 cacacctgtt tgtttataag gggctgagaa cgcctttgac cttcggttga acatcactga
7081 ccaaggtaag ctcttaatat ttgtattttt aacctatctg gtaactattt tcgcgccaat
7141 tttaacgtat gaccgtttgt ggtaacaaac tgtttagcta aagtgccaaa gggcaagtac
7201 aggcgaactt tgagtcagag aaaacttggc attaccactt tcgttactgg ctgcttgcct
7261 ttgtaccggg agtggtaaca ccttttaggt atgttttcat tgttgccaaa gttattgtcc
7321 tattgaaaaa atagtaaccg ggagtggtat aaatacttgt gctggttttt gcactgtctc
7381 tttgcttc
//
