LOCUS HM029238 6941 bp ss-RNA linear VRL 05-APR-2011
DEFINITION Avian nephritis virus 1 from China, complete genome.
ACCESSION HM029238
VERSION HM029238.1
KEYWORDS .
SOURCE Avian nephritis virus 1
ORGANISM Avian nephritis virus 1
Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes;
Stellavirales; Astroviridae; Avastrovirus; Avastrovirus 2.
REFERENCE 1 (bases 1 to 6941)
AUTHORS Zhao,W., Hua,X.G., Yuan,L., Cui,L., Shan,T.L., Dai,X.Q., Zhu,A.L.,
Yu,Y., Zhu,C.X. and Yang,Z.B.
TITLE Sequence analyses of the representative Chinese-prevalent strain of
avian nephritis virus in healthy chicken flocks
JOURNAL Avian Dis. 55 (1), 65-69 (2011)
PUBMED 21500638
REFERENCE 2 (bases 1 to 6941)
AUTHORS Zhao,W., Shan,T., Dai,X., Zhu,A., Yu,Y. and Hua,X.
TITLE Direct Submission
JOURNAL Submitted (23-MAR-2010) School of Agriculture and Biology, Shanghai
Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai, China
FEATURES Location/Qualifiers
source 1..6941
/organism="Avian nephritis virus 1"
/mol_type="genomic RNA"
/isolation_source="stool"
/host="chicken"
/db_xref="taxon:336960"
/country="China: Sichuan"
/collection_date="2009"
CDS join(14..3048,3048..4575)
/ribosomal_slippage
/note="ORF 1a and ORF 1b"
/codon_start=1
/product="non-structural polyprotein"
/protein_id="ADG45752.1"
/translation="MASAGPTGAGACPPKAFTAQAGLAKLVNPAGLNSILLRGKDEFG
ATQAWKELMGCDVIFARSINQWYGLKGTTYYELTVVLGQPLYKPVADPELTEEEKAVM
TVVQSRFAQSNSSIVLARTLLNKNCELKCRVRELTDQLGNTEVQLAREKVKAAAFKLE
NRKLLVENENLKKQLEEKETKFNWKGLRSALIWLFVALLFAGYITGSDAACTLVDVPS
PVKIGFETFKQMCLHKDSYLPEGAFDKEALALECSQHADGSDGDVYYMDCKESITNSI
SGKTSLTGMIRDVFKVDEIAATTKAVWHFAMDFSLAYPICVMFCPILTRSKKHAILAA
CCALVAKCCGLRLLPFTLVLTYAPLETAIAGCIYGLGYIDIPVVTLLHWVGLVLKAIF
IPDDCFIGTRISHALAWSIMLPIWIITQELMAFTEFPLELQIITTVVVCTAGFGLRYL
TGTVTITEPDGTVKKYKRISNAKSAIGTISAVLLEKAKAVRGVIPPFPSKADNIVKIE
VDVDGGSMGVGFRLGNYLYTAGHVVGEAKIAKVTWKGLTSQAKVLGQTELPLFTDTLA
RLEVPKPFTQLPVFRLAKSAENDYVQMVCFDHNMQSVVSFSGWANIDGEYLNAPFETY
AGTSGSPIINRDGRILGVHFGSNAVVSQGYVISRLFASEPAVRQCKSDEDLAEEIVRK
VMGGIRVSFASLTSELEKQREELNALKQLVNDLLDTDLLSPEKKKGKTKRTVRGQKHK
TKSISKAAFMKTKVLTEEEYRRLEDEGFSKDEIKEIVDNLREQAWIDYQNQLDEEGDD
DWYDQMMEDERINNQIDQEIERNLEDRGEWYGQRKITFKERAMLRFIQLGRQQQTATI
SFPDGHEDKAEEIFSKVVTTEDLPEGETSEAALSLPNKIVHQMGKRLNFKHVKIHPDK
TFMKSGVTQFEETPEGNIILKAKTTTVAPKEELVLQQGEQQPQQVEQQQQPQQPAVEE
KKRTPPPKPQRKPKTGAKAKCLDCGETFVERQDFHVCKSKKLKEPPSGGFTPVPDYLR
WNNWQIYMEPLDLRITVPDNYPILGHIAIDKLVERKKKVNDPLLKMLEQPKCEGFTST
TWTRKAYTKSFEKFDYGNAVDFEQDYPELTAFADAAVLAEVGYMEGTHVIPIQETSKN
MDSTPAFPKMLDFDSEKDYLAAHGMTEYVETQIGKQTGKPLWWCFLKNEILKEKKVSE
DDIRIITCSDPVITRLGASFDTEQNERMKERTETHHAQVGWTPFFGGLDKRVRRITSC
GRTQVLELDRTRFDGTIPVQLFQRMRTMRKFFLTRRSRKRYGKLLDWYNAQLTDRITL
LPTGEVTHVKKGNPSGQFSTTVDNNLFNEWLTAFEFAFQHLENHGTIPTVKDYRANVD
FLCYGDDRLLAYNPSFVNYDPQKTIDMYKNIFGMWVKPENIKLFGSPTGSSFCGFTLV
KPHGRWVGVVNVNKLLQSLKTPTHRLPDIESLWGKLVSLKIMCYHSDPEAVSYLSNQI
KRVEEYARGEGIELPEVGPDFYRKIW"
CDS 4595..6637
/note="Orf2"
/codon_start=1
/product="structural protein"
/protein_id="ADG45753.1"
/translation="MPGPAGPGNGGTRPKTQLAKPKKAKKLPSQKKPSSQKPLKKELK
KVEKQVKVLKKRTNGPKTDDTMKTTVTIGTISGQTTNGLSRQNRVAFNPLLLKTTSGG
NTTPLSIRSSMCEMWRLRYVEVIATPLTGYSNIVGSVGFIALTLNGLEATADSIDTIK
ARRHYQMSLGKPARMRIPARELAGPREGWWLVDTSQSPADSYGPALDLLLAYRTENLL
STTGTTTSDFKGALWQVEVKVVYDFSTYNPKPGLQTLISQTLPPDQQVTITTSAQDGS
LIMTTTSPSLIRLLTPRVGGQRSGKSETIWAIAAAAVDAAAGVLGPWGYLLKGGFWLV
RKIFGPSTLSTTTAQYQVYPCIESAMSDQPIFGGTGSEQVTLPLVHISEVMNPNSEVN
NLQPSAYSLPPAPPQPSEDPELPLALLTGQSGVPPVYQYGGSEYTPQPKWSGSTMILT
GVPHHKHSTGTTSPFGVRVNSMTPANVNQLDVYEFSDFAIFFGFGNYLGEGPMHTGKT
MLYSLFDGSDVSRPWLDAAPARWQLPAWTGFAVPGAGDFYLQMQAVTDKSTRTTSTGC
YFLVAYRTSRRLIAFHHAGASAAPAPDSLLCLYNVDAGRPPVLTNFNFQLNWDTQALG
LQHSNEVELDGESDDDDISLADSFINSEFGGVDQLEKEREHLLRRLRDIDAKRFTI"
ORIGIN
1 ccgaatagat gggatggctt cggccggccc tactggggcg ggggcttgcc ccccaaaggc
61 tttcactgct caggccggac tggccaaatt ggtcaatccg gccggcttaa atagcatcct
121 cttaaggggg aaagacgagt ttggggcaac ccaggcttgg aaagaactca tgggatgtga
181 tgttatcttt gcaagatcca tcaatcaatg gtacgggctt aaagggacga cctactatga
241 gcttactgtt gtactcggcc aacctctgta taaaccagtt gcagatcctg aactgactga
301 agaggaaaag gctgtgatga ccgtggttca atctcggttt gcacaaagta actctagtat
361 cgttctcgcc cgcacgcttc tgaacaaaaa ttgtgaactt aaatgtagag ttcgtgaact
421 cactgatcaa ctgggaaaca cagaagttca gttagcgcgt gaaaaagtga aagcagcggc
481 ctttaagctt gagaacagga aactccttgt agaaaatgaa aatctcaaaa aacagcttga
541 agagaaggag acaaaattta attggaaggg actaagatct gccctcatct ggctttttgt
601 tgctttactg tttgccggct acattactgg ttcagatgca gcatgtacac ttgttgacgt
661 tccgtcccct gttaaaattg ggtttgaaac tttcaagcag atgtgtctcc ataaggattc
721 ctatctccct gaaggtgcct ttgataagga agctctggca cttgaatgct ctcagcatgc
781 agatgggagt gacggagatg tctattatat ggattgtaaa gaaagtataa ctaattcaat
841 ctcagggaaa acctccctta ctgggatgat tcgtgacgtc ttcaaagttg acgaaattgc
901 tgctacaaca aaggctgttt ggcactttgc tatggacttt agtcttgcct atccaatctg
961 tgttatgttt tgtcctattt taacaaggag caaaaaacac gcaatactag cagcgtgttg
1021 cgctcttgta gcaaagtgtt gtggattgag acttttgccc ttcacattag tactcacata
1081 tgcacctctt gagacagcca tagcaggttg catttatggg cttggctaca ttgacattcc
1141 agtggtgact ttacttcatt gggttggact tgttcttaaa gccattttta ttcctgatga
1201 ttgctttatc ggaactagga tttcacatgc cctagcctgg tccataatgt tgccaatctg
1261 gattataaca caagagctta tggcatttac agaattccct cttgaacttc agataattac
1321 aacagtcgtg gtttgtactg caggctttgg ccttcggtac ttgactggaa ctgttacaat
1381 aactgaacct gatggaactg ttaaaaagta taagaggatt tccaatgcca aaagtgcaat
1441 tggtactatt tcagctgtac ttttagagaa agcaaaagct gttagaggtg tgataccacc
1501 ttttccgagt aaggctgata acattgttaa aattgaggtt gatgttgatg gtggttcgat
1561 gggcgttggc ttccgacttg gcaactacct atatacagcg ggtcatgttg ttggggaagc
1621 aaaaatagcc aaggtaactt ggaaaggctt aacatctcaa gccaaagtcc ttggacaaac
1681 tgagctacca ctcttcacag atacgcttgc ccgccttgaa gtaccaaaac ccttcacaca
1741 acttccagtt tttaggttag caaagtctgc tgaaaatgac tatgtgcaga tggtttgttt
1801 tgaccacaat atgcagagtg tagtttcatt ctctggctgg gctaatatcg acggtgaata
1861 ccttaatgct ccttttgaaa cctatgcagg gacatcgggt tcacctatta ttaataggga
1921 tgggagaata cttggtgttc attttggtag taatgccgtc gtttcacagg gttatgttat
1981 ttctaggctc ttcgcttctg aaccagctgt taggcagtgc aaatctgatg aggatcttgc
2041 tgaagagatt gttcgcaagg ttatgggcgg tataagggtc tcctttgctt cacttacatc
2101 tgaactcgag aaacagcgtg aagaacttaa cgctcttaaa cagttggtca atgatctttt
2161 agacaccgac ctcctgtctc ctgagaagaa gaaaggtaag actaagagga ccgtccgtgg
2221 tcaaaaacat aaaactaaat ccatctctaa ggcagccttc atgaaaacta aagtccttac
2281 cgaggaagaa tatcgccggt tagaggacga aggcttttcg aaagatgaga taaaagagat
2341 tgtggacaat ctccgtgaac aagcttggat tgactaccag aatcaacttg atgaagaagg
2401 tgatgatgac tggtatgatc aaatgatgga ggatgaaaga ataaacaatc aaattgacca
2461 ggaaattgag aggaatctcg aagatagagg cgagtggtat ggtcaaagaa aaataacctt
2521 caaggaaaga gcaatgcttc ggtttataca acttggtcga caacagcaaa cggccactat
2581 ttcattccct gatggtcatg aagataaagc tgaagaaatt ttcagtaagg tcgttaccac
2641 tgaggacctt ccagaaggag aaacttcaga agcagcgctc agcctcccca ataaaattgt
2701 acatcagatg gggaagaggt taaacttcaa gcatgtgaaa atacacccag ataaaacttt
2761 tatgaagtct ggggtaacgc agtttgaaga aacgcctgaa ggtaacatca tcctcaaggc
2821 caaaactaca actgtggctc ctaaggaaga actagtcttg caacaaggtg aacaacaacc
2881 acagcaggtt gaacaacagc aacaacctca acaaccggct gtagaagaga agaaaagaac
2941 accaccacca aaaccgcaga gaaaaccaaa gacaggtgca aaagcaaagt gtctcgactg
3001 tggcgagact tttgttgaaa gacaggattt tcatgtttgt aaatcaaaaa actaaaagag
3061 cccccttcgg ggggctttac acctgtccct gattacctta ggtggaacaa ctggcaaatc
3121 tatatggaac ctcttgacct gagaataaca gtacctgaca attatcctat tttgggtcac
3181 attgccatag ataagctggt tgagcgtaaa aagaaggtca atgaccctct gctcaaaatg
3241 cttgaacaac ctaagtgtga aggctttact tcgacaactt ggactcgtaa ggcctacact
3301 aagtcatttg aaaaatttga ttacggcaat gctgttgact ttgagcaaga ttacccagaa
3361 ctcactgcct tcgcagatgc tgcagtgctt gctgaagttg ggtatatgga gggaacacat
3421 gtaatcccca ttcaagagac cagtaaaaac atggactcta ctcctgcttt ccctaagatg
3481 cttgattttg atagtgaaaa ggactatctt gcagcacatg gaatgacgga gtatgtggaa
3541 acccaaatag gcaaacaaac tggtaagcca ctttggtggt gcttccttaa aaatgagatc
3601 cttaaggaaa agaaggttag tgaggatgac atcaggatta ttacttgctc tgacccagtg
3661 ataactagac tgggcgcctc ttttgacaca gaacagaatg agcgcatgaa ggaaagaact
3721 gaaacacatc acgctcaggt gggctggacc cccttctttg gtggactgga taagcgtgtt
3781 aggagaatca cgtcctgtgg caggacccaa gtcttagaac ttgatcggac gcggttcgat
3841 ggcaccattc cagttcagct cttccaaaga atgcgtacca tgcgtaaatt cttccttact
3901 aggcgttcac gaaagaggta tggaaaatta cttgactggt acaatgccca gttaactgat
3961 aggattactc tcttaccaac gggagaggtt actcatgtca agaagggcaa tccatctgga
4021 cagttttcaa caactgttga taataatctt ttcaatgagt ggttgactgc ctttgagttt
4081 gcttttcaac atctggaaaa ccatggcaca atcccaacag tcaaagacta cagggcaaat
4141 gttgactttc tctgctatgg agatgatagg ctcttagcct acaatccatc ctttgtcaac
4201 tatgatcctc agaaaaccat tgatatgtat aagaatatct ttgggatgtg ggtcaaacct
4261 gaaaacatca agctctttgg ctcgccaaca ggttcttcct tttgtggctt taccttggtt
4321 aagccacatg ggcggtgggt gggagttgtc aatgttaaca aactccttca gagtctcaaa
4381 acacccacgc acaggctgcc agacattgaa tccctgtggg gcaagctcgt gtcgctgaaa
4441 attatgtgct accacagtga ccctgaagct gtgtcctacc tttctaacca gataaagcgt
4501 gttgaagaat acgctcgtgg tgaagggatt gaacttcctg aagtcgggcc cgacttctac
4561 agaaaaatct ggtgagcgga ggaccaaaat aagaatgcct ggccctgccg gccctggcaa
4621 tgggggcacc cgccctaaaa ctcaactagc gaaacccaag aaggcaaaaa aactcccatc
4681 tcagaagaag ccttcttcgc agaaacctct caagaaagaa cttaagaagg ttgagaaaca
4741 agtgaaggtg cttaaaaaac gcaccaatgg gcccaaaact gatgatacca tgaaaacaac
4801 agttactatt ggtactattt caggacagac tacgaatggg ctctctaggc agaatagggt
4861 ggcttttaat ccattgctac tgaaaacaac tagtggaggc aatacaacac cgctctcaat
4921 caggtcctca atgtgtgaga tgtggagact tcgctatgtg gaagtcattg caacacctct
4981 aactggctat tccaatattg tgggctcagt tggctttata gcgctcactc ttaatggcct
5041 tgaagctact gctgattcta ttgataccat caaggcgcga agacattatc aaatgtcgct
5101 tggtaagcct gcccgcatgc gtataccagc cagggaactt gccggcccta gggagggttg
5161 gtggctcgtt gatacttcac agtcgccagc agattcgtat ggtccagcac tagatttgct
5221 tctagcatac cgtactgaaa atctccttag tacaactggc actactactt ctgattttaa
5281 gggtgctctc tggcaagttg aggttaaggt tgtttatgac ttttccactt ataacccgaa
5341 accagggctg cagacattaa tttcacagac tcttccccct gatcaacagg taacaataac
5401 aacttctgca caagatgggt cactgattat gactactact agcccctctc tcattcggct
5461 actcacgcct agggttggtg ggcaacgtag tgggaaatcg gagaccatct gggcaattgc
5521 tgctgctgct gttgatgctg cagctggtgt tcttggtccc tggggctatc ttcttaaggg
5581 tggtttctgg ctagttcgca agatttttgg accatcaaca ctctctacaa caacagcaca
5641 gtaccaggtc tatccatgca ttgagtctgc aatgtccgat cagcccatct ttggtggtac
5701 tggttcagag caggttactt taccattagt acatatctca gaagttatga atcccaattc
5761 tgaggtcaat aacctgcaac catctgcata ctccctacca cctgccccac cacaaccttc
5821 agaggatcct gagctaccac tagcactctt aactgggcaa tcaggtgttc cacctgtcta
5881 ccagtatggt ggtagtgaat atacaccaca gcccaaatgg agtggctcca ctatgattct
5941 cactggagtg ccccaccaca aacactcaac aggcacaact tctccttttg gtgttcgggt
6001 caattcaatg acgcctgcta acgtgaacca gttggacgtc tatgaattct cagactttgc
6061 aatcttcttt gggtttggta actaccttgg tgaggggcca atgcacactg gaaagactat
6121 gctctactct ctctttgatg gtagcgatgt ctctagacct tggcttgacg ccgcacctgc
6181 gcgatggcaa ctacctgcgt ggaccggctt tgcagtacca ggtgccgggg acttttatct
6241 tcaaatgcag gcagtaaccg acaaatcaac cagaactaca tctactggtt gttacttttt
6301 ggtcgcctat cgcacctcgc gtagacttat tgctttccac catgcgggag ctagtgccgc
6361 acctgcgcct gactcactgc tgtgcctgta taatgttgat gccggtcgac cacccgttct
6421 tactaatttt aacttccaac taaattggga tacacaggca cttgggctgc aacactctaa
6481 tgaagttgaa ttggatggag aatctgatga tgatgatatc tctctagcgg attccttcat
6541 caacagcgag tttggtggtg tggaccaact cgaaaaagaa agggaacatc tactgcgtcg
6601 cctgagggat atcgacgcaa agcgcttcac tatctaagcg caccacactg gctaactgac
6661 tacagttgag aaggggtgga ccgtaaacca ctggttggct gactacagca actgactttc
6721 ccgaggccac ggcgaatagc atcgagggta caggaaagct ggggccattg catagtcaac
6781 taatttgact atgctagggg aatcaatggg gtggtgggtt aatcaaaccg ccactcacgc
6841 aacttggagc ctgctaaaac ctacgctcct gtgcgctaaa gttggttctc ccgaaagtgg
6901 gcttttcatt atttgaatta attttgaatt ggctaacttt t
//
