LOCUS       HQ738642                2036 bp    DNA     circular VRL 25-JUL-2016
DEFINITION  Circovirus NGchicken38/NGA/2009 isolate NGchicken38, complete
            genome.
ACCESSION   HQ738642
VERSION     HQ738642.1
KEYWORDS    .
SOURCE      Circovirus NGchicken38/NGA/2009
  ORGANISM  Circovirus NGchicken38/NGA/2009
            Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
            Arfiviricetes; Cirlivirales; Circoviridae; Circovirus; Circovirus
            pigeon.
REFERENCE   1  (bases 1 to 2036)
  AUTHORS   Li,L., Shan,T., Soji,O.B., Alam,M.M., Kunz,T.H., Zaidi,S.Z. and
            Delwart,E.
  TITLE     Possible cross-species transmission of circoviruses and
            cycloviruses among farm animals
  JOURNAL   J. Gen. Virol. 92 (PT 4), 768-772 (2011)
   PUBMED   21177928
REFERENCE   2  (bases 1 to 2036)
  AUTHORS   Li,L. and Delwart,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2010) Blood Systems Research Institute,
            University of California, San Francisco, 270 Masonic Ave, San
            Francisco, CA 94118, USA
FEATURES             Location/Qualifiers
     source          1..2036
                     /organism="Circovirus NGchicken38/NGA/2009"
                     /mol_type="genomic DNA"
                     /isolate="NGchicken38"
                     /isolation_source="muscle"
                     /host="chicken"
                     /db_xref="taxon:942030"
                     /country="Nigeria"
                     /collection_date="2009"
     CDS             1..954
                     /note="putative replication-associated protein"
                     /codon_start=1
                     /product="Rep protein"
                     /protein_id="ADU77009.1"
                     /translation="MAPCKSSTRTPPGRVSAAEGGARREATRRPPREAAAKRWCFTLN
                     NPTEDEIKSLDSWLLSEFHYAIVGKEVGEQGTPHLQGFIHLKQKKRLSQLKQLFNRAH
                     WEKARGSDEDNEKYCSKEGNVLLTLGIPARGNRSDLSGAVAAVKAGRAMTEVAREFSE
                     IYVKYGRGLRDLKLLIGQQPRDFKTEVIVITGPPGCGKSRWAAEYPGSKFYKMKGEWW
                     DGYDHQDVVVIDDFYGWLPFCELLRVTDRYPHKVPVKGAFVEFTSRVIIVTSNSPPDA
                     WYSEEKCCVQALFRRINKWLVWNHDKFEDAPDCMKKYPINY"
     CDS             complement(1125..>1946)
                     /note="putative capsid protein; start codon not
                     determined"
                     /codon_start=1
                     /product="Cap protein"
                     /protein_id="ADU77010.1"
                     /translation="IRRRRFRRRRAPIRRRRIRRRRTRISRNLRGHRRSSRIYYFRLR
                     RKDKITLTQATNDFKFGTGIFTFKLADVLTVGLNAPTLKVPFEDYQIPLVKVEMRPLG
                     VDITTWKGFGHTVPMYDARLKTFQGQTDLGDDPLMDFDGARKWDLRKGFKRLIRPRPQ
                     LTIADLATANQTAATWFSGRNQWIPLQVSGNSLFPQKVNHYGLAFSYLQPQPDPMYYE
                     CEVTFYVKFRQFAWTTLNVPPTPNIEGMELMHICNGDCNQCFADALDPDSAVDSE"
ORIGIN      
        1 atggctccgt gcaaatcaag cacccgcacc ccccctggcc gcgtgtccgc cgccgaaggc
       61 ggcgcccgtc gcgaagcgac ccgtcgaccc ccccgtgagg ctgcagcgaa gagatggtgc
      121 tttactctga acaacccgac cgaggacgaa attaaaagcc tggactcgtg gttgctaagt
      181 gagttccatt atgctatagt ggggaaggag gtcggggagc aggggacccc gcatttgcaa
      241 gggtttatac acctaaagca gaagaagcgg ctttctcaac tgaaacagct ttttaatcgg
      301 gcacactggg agaaagctcg cggtagtgat gaagataatg agaagtattg ctctaaagaa
      361 ggcaatgttc tacttactct gggcattcct gcgaggggaa accggagcga cctcagcgga
      421 gctgtagccg cggtgaaagc cggaagagca atgacggagg tcgcgcgaga gttcagtgaa
      481 atctacgtca agtatgggcg gggtttgcgc gacctgaagc tgctgattgg tcagcagccg
      541 cgtgacttca aaacggaagt catcgtcatc acgggcccgc ccggttgcgg gaagagccgt
      601 tgggcagccg agtaccccgg aagtaaattc tacaagatga agggtgagtg gtgggatggc
      661 tacgaccacc aggatgtagt cgtcatcgat gacttctacg ggtggcttcc cttctgtgag
      721 ctgctccgtg ttactgaccg gtacccgcat aaggtgcccg tgaaaggggc ctttgtggag
      781 ttcacgtctc gcgtgataat agtgaccagc aacagtcccc ccgatgcctg gtacagcgag
      841 gaaaagtgct gtgtccaagc gctcttccgg cggatcaaca agtggctggt ctggaatcat
      901 gacaagtttg aagatgctcc tgattgtatg aaaaagtacc ccatcaacta ttaacccccc
      961 acccccatga cactagtaaa gggacccaag ccagccgagc cggccgcgcc cgcgagcgaa
     1021 gcgagtggcc gcgcggcctg gcgagtctga cgggtccgga gcggagcgac cgcgaatgcg
     1081 ggagcgaagc gactacactt gaaaatgaat ttgcaataaa atctttattc agagtccaca
     1141 gctgagtctg ggtctaatgc atcagcaaaa cattggttac aatccccgtt acaaatatgc
     1201 atcaattcca ttccctcaat gttgggggtc ggggggacat tgagggttgt ccatgcaaac
     1261 tgtctgaatt tgacatagaa tgtcacctca cattcataat acatagggtc tggctggggt
     1321 tgcaggtaac tgaatgcaag cccatagtga ttaacttttt ggggaaacaa gctgttgcct
     1381 gatacctgca gtggtatcca ctggtttctt cctgagaacc aggttgctgc cgtctggttt
     1441 gccgtggcta gatccgcgat tgttagttga ggcctaggcc ttatgaggcg tttaaagccc
     1501 tttctcaaat cccatttcct ggccccgtca aagtccatga gggggtcgtc gcccaaatca
     1561 gtctggcctt gaaaggtttt cagccttgca tcatacatcg ggactgtgtg cccgaatcct
     1621 ttccaggtcg tgatgtcgac tcctaggggt ctcatttcaa ccttcaccaa tggtatctga
     1681 tagtcctcaa atgggacttt cagcgttggg gcgttcagcc ccactgtgag tacatccgcg
     1741 agtttgaatg taaatatgcc tgttccaaat ttgaaatcat tggttgcctg cgtcaaggtt
     1801 atcttgtcct tgcgacgtag acggaagtag tatatccggc tactccttct gtggccacgt
     1861 aggttcctgg atatgcgtgt ccgtcgtcgc ctgattctgc gtcggcgaat gggcgccctc
     1921 ctccggcgga atctccgcct tcttatctgc ggaagtgcaa cgtcacttcc gtggctccaa
     1981 gtcgcggatt agtattaccc gcgacttgga gccacggagc cacatcgcgc agcgat
//