LOCUS JF304766 7657 bp DNA circular VRL 08-FEB-2014
DEFINITION Saimiri sciureus papillomavirus type 2 isolate Mac2067.1, complete
genome.
ACCESSION JF304766
VERSION JF304766.1
KEYWORDS .
SOURCE Saimiri sciureus papillomavirus 2
ORGANISM Saimiri sciureus papillomavirus 2
Viruses; Monodnaviria; Shotokuvirae; Cossaviricota;
Papovaviricetes; Zurhausenvirales; Papillomaviridae;
Firstpapillomavirinae; Dyoomikronpapillomavirus;
Dyoomikronpapillomavirus 1.
REFERENCE 1 (bases 1 to 7657)
AUTHORS Chen,Z., Wood,C.E. and Burk,R.D.
TITLE Novel papillomavirus complete genomes isolated from humans and
monkeys
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7657)
AUTHORS Chen,Z., Wood,C.E. and Burk,R.D.
TITLE Direct Submission
JOURNAL Submitted (07-FEB-2011) Microbiology and Immunology, Albert
Einstein College of Medicine of Yeshiva University, 1300 Morris
Park Ave, Ullmann 515, Bronx, NY 10461, USA
FEATURES Location/Qualifiers
source 1..7657
/organism="Saimiri sciureus papillomavirus 2"
/mol_type="genomic DNA"
/isolate="Mac2067.1"
/isolation_source="cervix"
/host="Saimiri sciureus (squirrel monkey)"
/db_xref="taxon:990305"
/country="USA"
/collection_date="2009"
/note="type: 2"
gene 1..432
/gene="E6"
CDS 1..432
/gene="E6"
/codon_start=1
/product="early protein E6"
/protein_id="AEA35061.1"
/translation="MLCAMADPVTIEDLCSELDLVAWDLQLTCIFCKCFLDYQDLCAF
MYKDLRLKWQKGFPFGACQRCVLLQARVLAWRYQMRAAYAVTVEQDCRLPLSDIKIRC
IVCAIPLRTEDKVRHVEENRRFIQTSGYWRGRCHYCWYTQL"
gene 429..728
/gene="E7"
CDS 429..728
/gene="E7"
/codon_start=1
/product="early protein E7"
/protein_id="AEA35062.1"
/translation="MIGANPTLQDIILQELPEPVNLQCNEDIDYDKLDSNEDVTQNQS
TQSTGLYQVLSQCDTCDRDIKLLVRCTEEDVEDLYDLLTGTLQIVCPYCARCVNP"
gene 734..2677
/gene="E1"
CDS 734..2677
/gene="E1"
/codon_start=1
/product="early protein E1"
/protein_id="AEA35063.1"
/translation="MASQPGTSKGDGAGWIVVEADVHRPEDCSSDEGEDSDLEAAGYD
VVDFIDANESLGSPGEAAALYNTQCATEDTAVLQALKRKYLKSPYTSPHGHVIDGKEV
NELSPRLSAINIGKNTQKAKRRLFARQQQDSGYGNSLEVETQATDETPTQVDEGAGAG
EPPGASLESGSQTAGGTEAAQGREEKRPEEPVVQWLQSSNLRAILLGKFKECYGVGYT
DLVRQFKSDKTCCWDWVIAAFSMPMAVAEGLTSTIQPLCTYAHIQINTCSLGCVVLVL
ASFKAAKNRTTVKKALGTLLNIPENRMLVEPPKLKSMPAALYWFRTSLSNVSEVYGEP
PEWLKRQTQVSHCLEEEVFCLSTMVQWAYDNGHTDDSTIAYEYALLGDTDSNAAAFLK
SNCQARYVKDCGTMVRHYKRAEMRRMTMAEWIQHCSDRIEEEGDWRPIVRFLRYQGVD
FISFCKALKDFLKGIPKRNCIVLCGPPNTGKSWFGMSLMMFLEGKVLSYCNSTSHFWL
QPLGDTKVAMLDDATPQCWDYIDTYLRNALDGNPICVDMKHKAPIQLKCPPMLITTNT
DIREGDRWRYLRSRHTMFTFQNEMPFTPQGTPVYELSKANWKAFFGRSWAQLDLGDRE
DEQDNGRANQPFRCCAGTADRLL"
gene 2619..3827
/gene="E2"
CDS 2619..3827
/gene="E2"
/codon_start=1
/product="early protein E2"
/protein_id="AEA35064.1"
/translation="MEGLTSRLDAVQELLIDCYEADSRKLEDHIHHWGLLRRENALLY
RARQLGMHKVGLQIVPPLGVSQQKAHQAIEVHLALQSLNESQYRTEDWSLADTSLEMW
TCAPPKCFKKGGRQIEVWFDGKPDNVMLYTLWKHIYVQQADNTWQKVTGYADHSGLYY
LQGADRVYYVEFQQECKQYGTTGTWVVQDGQRGIEPCTSVSSTSSDTSAALSSTGTAE
QLHTSVTDTPSPKTSTPRLKRPLDDLNSYQHQQRRQQQQQQQQQQQQPTPPPPPQKRR
KHLVTSEGHLGRLSTNTREAHNAGCNNSDRDSSDYHRNDDNHQTAPIVLLKGDANCLK
CHRYRLRKHADLYVAASTTWYWSGKQGSERIGQATVAITFDSQEQRARFLAKVPIPPG
LKIVLGTMPV"
gene 4093..5541
/gene="L2"
CDS 4093..5541
/gene="L2"
/codon_start=1
/product="early protein L2"
/protein_id="AEA35065.1"
/translation="MVKSRAPRRKRASATQLYQTCKAAGTCPADVVNKIEHNTVADNI
LKWGSLGVFLGGLGIGTGAGSGGRAGYVPLAGRPSVTIEPTSVVKPPVVIEASVPAIE
ATESSIVPLLEDANLVDIGGGSAPPSSGVYGGEGFHVTSTVDNTPAVIPVTPAAPGAG
AHVSDVTFNNPLFTEPAVLEVPTAAEAAGTLQSSVLSGGREAAESIELHTYTVNGGDP
YPSTSTPLHTVTRGTSALRLYGRDTQQVRVDNPQFYTRPSRLITYDNPAFESEDTTLW
FDRPVTATSPAPDPDFLDIVALHRPALTSTRRGAVRYSRLGQRATLQTRSGKQIGARV
HFFRDFSPIAPADTAYEMQPLVQYSSAADNDLYDIYAASDIDAPSAPDIDTPSASVSR
ATLSRSFPSSAPSVSASAYAVPPAPASAGPDIVLPVVPTAAYPIPGFPYSPAVIPAAV
TIYAGDFFLHPSYIWKRRKRVSYFLADGIVAA"
gene 5522..7057
/gene="L1"
CDS 5522..7057
/gene="L1"
/codon_start=1
/product="early protein L1"
/protein_id="AEA35066.1"
/translation="MALWLPSENKLYLPPTAVSRVVSTDEYVTRTSLFYYAGSSRLLA
VGNPYFPVKKSDGTIAVPMVSGNQYRVFRVTLPDPNKFGLPDASLYNPDKQRLVWACV
GVEVGRGQPLGIGLSGNPLFNKLEDTENPTKYVATAGTDNRQNVAIDNKQTQLCIIGC
TPPVGEHWGKGNHCDGVATAPGDCPALELVNSVIQDGDMVDTGFGAMDFSALQTSKSD
VPLDIANAVCKYPDYLKMASEVYGDSLFFYLRREQLFARHFFSRAGTVGDTVPEDLYI
KGNDSQSQKALASSVYVPTPSGSMVTSEAQLFNKPYWLQRAQGHNNGVCWENQLFVTV
VDTTRSTNMTLSATATTEATYKASNFKQYTRHCEEFDLQFIFQLCIVDLSPEVMAYIH
TMNPDILDSWNLGIQPPPTGTLEDTYRYLKSEAIRCQAKVPPKEKVDPYDKYSFWKVD
LRERFSSDLDQYPLGRKFLLQSGLRARPRLPKPPSRKRPSVIAPPPTASTSVAAAAKR
RRR"
ORIGIN
1 atgctgtgtg ctatggcgga tcctgtaact atagaagact tatgcagcga gctagactta
61 gtagcatggg acttgcagct tacatgcata ttctgcaaat gctttttgga ctaccaggac
121 ttgtgcgctt ttatgtacaa ggacctgagg cttaagtggc aaaaaggatt tccatttggt
181 gcgtgtcagc ggtgcgtatt gctacaagcc cgggtgcttg cgtggcgata ccaaatgcgt
241 gctgcgtatg cagttacagt agaacaagac tgcagactgc cacttagtga cataaagata
301 cgctgcatcg tgtgtgccat cccactgcga acagaagaca aggtgcggca cgtggaagag
361 aaccgaaggt tcatacaaac ttcaggctac tggagaggcc gctgccatta ctgctggtac
421 acacaactat gattggagca aacccaacac tacaggacat aatactacaa gaactgccag
481 agccggtaaa cctgcaatgc aatgaagaca tagactatga caaactggac agtaacgagg
541 acgtgacaca gaaccagtcc acacagtcca cagggctgta ccaagtactc agccagtgtg
601 acacctgcga ccgagacata aagctgttgg tgagatgcac tgaagaagac gtagaagacc
661 tttacgacct tctgacaggc acactgcaaa tagtgtgccc gtattgcgcc cgctgcgtga
721 acccttaagt ggaatggcaa gtcaaccagg tacatcaaag ggcgacgggg cagggtggat
781 agtagtggaa gcagacgtac acaggccaga ggactgtagt tcagatgagg gggaggacag
841 tgacttagag gcagcaggct atgatgtagt agatttcata gatgcaaatg aaagcctggg
901 aagtcccggg gaggcagctg cattgtataa tacccagtgt gcaacagaag acacagcagt
961 gctgcaggca ctgaaacgaa agtatttgaa aagcccttac acaagtccgc atgggcatgt
1021 tatagatggc aaagaagtga atgagttgag tccgagacta agtgctataa acataggaaa
1081 aaatacacaa aaagccaaaa gacggctgtt cgctagacag cagcaggaca gcggctatgg
1141 caattcattg gaagtggaaa cgcaggctac tgacgagaca ccaacgcagg tagatgaggg
1201 ggcaggggca ggggaacccc caggggcgtc actagaaagc ggaagccaga cagcaggggg
1261 aacggaagca gcccagggaa gggaggagaa gcgcccagaa gaacctgtgg tgcaatggtt
1321 gcaaagcagt aacctgcgtg caatactgtt gggtaagttt aaggagtgct atggggtggg
1381 atatacagac ctggtgcgtc agtttaaaag tgacaagacg tgctgctggg actgggtaat
1441 agcagcattt agcatgccaa tggcagtagc agaagggcta acatcaacta tacagccgct
1501 atgcacatat gcacatatac agataaacac gtgctcgctt gggtgcgtag tgttagtttt
1561 agcaagcttt aaagcagcta aaaacaggac aacagtaaag aaagctttag gaactttgct
1621 aaacatacca gagaacagga tgctagtaga gccaccaaag ctaaagagca tgccagcagc
1681 actgtactgg tttaggacaa gcttatcaaa tgtgtcagaa gtgtatggcg agcccccaga
1741 gtggctaaag cggcagacac aagtgagcca ctgcttagaa gaagaagtgt tttgcttgtc
1801 aacaatggtg cagtgggcat atgacaatgg gcatacagac gacagcacaa tagcatatga
1861 atatgcactg ctaggggata cagatagcaa tgcagcagcg tttttgaaaa gcaactgcca
1921 agcacgctat gtaaaagatt gtgggactat ggtaaggcac tacaagagag cagaaatgag
1981 gcgcatgaca atggctgagt ggatacagca ttgcagcgac aggatagagg aggagggcga
2041 ctggcgaccg atagtcaggt ttttaagata ccaaggggta gatttcataa gtttctgcaa
2101 agcgcttaaa gatttcttga aaggcatccc taagcgcaac tgcatagtgc tgtgtggacc
2161 cccaaacaca ggcaaatcat ggtttggcat gagcctgatg atgtttctag aaggcaaagt
2221 actgtcatac tgtaattcca caagccattt ttggctgcag ccactagggg acactaaagt
2281 agctatgtta gatgatgcaa ctccccaatg ctgggactac atagatacat acttaagaaa
2341 tgctttagac gggaacccta tatgtgtgga catgaaacac aaagccccta tccaactgaa
2401 atgtccacct atgctaataa caactaacac agacataagg gagggagaca ggtggcggta
2461 cctgcggagc agacacacta tgtttacgtt tcaaaatgaa atgccattca ccccacaggg
2521 tacgccagtg tatgagctaa gtaaagctaa ctggaaagcg ttttttggac ggtcgtgggc
2581 acagttagac cttggcgacc gggaggacga gcaggacaat ggaagggcta accagccgtt
2641 tagatgctgt gcaggaactg ctgatagact gctatgaggc agacagcagg aagctggagg
2701 accacataca tcactgggga ctgctgcgca gagaaaatgc attactgtac agggcacggc
2761 agctaggcat gcacaaagta ggactgcaga ttgtgccacc gctaggtgtg tcacagcaaa
2821 aggcgcacca agcaatcgaa gtgcatttgg cattgcaaag ccttaatgag tcccaatata
2881 gaactgagga ctggagcttg gcagacacaa gcttggagat gtggacatgc gcacccccga
2941 aatgctttaa aaaagggggg cggcagatag aagtatggtt cgatggcaaa ccggacaatg
3001 taatgttgta cacactatgg aaacacatat atgtgcagca agcagacaac acgtggcaaa
3061 aagttacagg ctatgcagac cacagtggct tgtactactt gcaaggcgcg gacagagtat
3121 attatgtaga attccagcag gaatgtaagc agtatgggac aacagggaca tgggtggtgc
3181 aagatggaca gcgcggtatt gaaccatgta cttctgtatc tagcacatcg tcagacacct
3241 ccgcagcgtt atcctctact ggaactgctg aacagttaca cacgtccgtc acagacactc
3301 catcccctaa gacatcaacc ccccggctca aacgacctct ggacgacctc aactcctatc
3361 agcaccaaca gcgccgccag cagcagcagc agcagcagca gcagcagcag caaccaacac
3421 caccaccacc accacaaaag cgcagaaagc atctggtcac atctgaagga cacttgggac
3481 gcctgtccac caacaccaga gaagcacata acgctggatg caacaacagc gacagggaca
3541 gcagtgacta tcacaggaac gacgataatc atcaaactgc acctatagta ctcttaaaag
3601 gtgatgcgaa ctgccttaag tgtcataggt acagactcag aaaacatgca gacctctatg
3661 tagctgcaag tacaacttgg tattggtctg ggaaacaagg gtctgaacgc attgggcaag
3721 ccacagtggc tattactttt gatagtcagg aacagcgtgc acgcttttta gctaaggttc
3781 caatacctcc aggcctcaaa attgttttgg gtacaatgcc tgtatgattc tgtacttgta
3841 cttgtatgct cttgatttat ttattttatt gtcacatatt gcagtgttct ttctagcact
3901 gttccccctc cgtcgtgggg acgtcccagt gctccttggt gcttcattag aaggtgcttt
3961 tgtagaccac gcgtcacaag gcgttgacag ccttctttac atattgttta tactgtttat
4021 gttgatattg tcaggtctgc gttacatggt gcacaaccac tgaataaagc tgctcacaca
4081 tgatacttag ctatggtaaa gtctcgagcg cctcgcagga agcgtgcatc tgctacccag
4141 ctttaccaaa cgtgcaaagc tgctggcacc tgccctgctg atgttgtcaa caaaattgag
4201 cacaacacag tagctgacaa catcttgaag tggggcagcc ttggtgtgtt ccttggtggg
4261 ttaggcattg gcactggggc tggttcaggt gggagagctg ggtatgtccc attagctgga
4321 cgcccgtcag tcaccataga acctacttca gttgtaaagc ctccagtggt cattgaagca
4381 tctgtccctg ctatagaagc cactgagtcc tctattgttc ctttgctaga ggatgctaat
4441 cttgttgaca ttggcggagg ctctgcaccg ccatctagtg gtgtttatgg gggcgagggg
4501 tttcacgtga cgtctacagt agacaacact cctgctgtca ttcctgttac ccctgcagcc
4561 cctggcgctg gcgcccatgt cagcgatgta acattcaata atcccctgtt cactgagcca
4621 gctgtcctag aagtccctac agctgcagaa gcagcaggca cactgcagtc ctctgttttg
4681 tctggaggcc gtgaagcagc tgaaagcatt gagctgcata cgtacactgt caacggcggt
4741 gacccctacc cttctactag cacacctttg cacactgtaa ctcgtggcac ttctgctttg
4801 cggttgtatg gcagggacac gcagcaagtg cgtgtagaca atcctcagtt ttacacacgg
4861 ccctctcgcc tgattactta tgacaatcct gcttttgaaa gcgaggatac cactctctgg
4921 ttcgataggc ctgttacagc cacgtctcca gcccctgacc cagactttct agacattgta
4981 gcattgcaca ggcctgcgct tacctctaca cgcagaggtg ctgtgcggta cagccgcctt
5041 gggcagcgtg ctacactgca aaccaggagt ggcaagcaaa ttggtgctcg tgtccacttc
5101 ttcagagact ttagccctat agctcctgct gacactgcgt atgaaatgca gcctcttgtg
5161 cagtacagca gtgctgctga caatgatcta tatgacatct atgctgcatc tgacattgat
5221 gctccttctg ctcctgacat tgacactccg tctgcaagtg tgtcacgtgc tacattgtct
5281 cggtccttcc ctagttctgc tccttctgtg tctgcatctg catatgctgt gcctcctgct
5341 cctgcttctg caggccctga tatagtactg cctgtagtgc ctacagcagc ataccctatc
5401 ccaggatttc catacagtcc tgctgtaata cctgctgcag ttactattta tgctggtgat
5461 ttcttcctgc atcctagcta catttggaag cgccgcaaac gtgtgtctta ttttcttgca
5521 gatggcattg tggctgccta gtgaaaacaa gctttacctg cccccaactg ctgtgtccag
5581 agttgtaagc actgatgaat atgtcacacg taccagctta ttttattatg ctggcagttc
5641 acgtttgctt gctgtgggca atccttactt tcctgtcaag aaatctgacg ggaccattgc
5701 tgttcccatg gtgtctggta atcaatacag ggtttttcgt gtcaccctcc ctgaccctaa
5761 taagtttggt cttcctgatg cttcattgta caaccctgat aagcagcgcc ttgtatgggc
5821 ctgcgtaggt gtagaagtag gccgcggcca gccattaggc ataggcctca gtggtaaccc
5881 actgtttaat aagcttgaag atactgagaa cccaactaaa tacgttgcta ctgctggcac
5941 tgacaatagg caaaatgtag ctattgacaa caagcagaca cagctctgta ttattggttg
6001 cacccctcct gtaggtgagc actggggtaa aggcaaccac tgtgatggtg ttgctactgc
6061 tcctggtgat tgtcctgctt tagagcttgt taactctgtc atacaagatg gtgacatggt
6121 tgacacaggt ttcggtgcta tggatttttc tgcactgcaa acctctaagt ctgatgtgcc
6181 tttggacatt gctaatgctg tctgcaagta ccctgactat ttaaaaatgg cctcagaagt
6241 gtatggtgat tcgttgtttt tttatttgag gcgtgagcaa ttgtttgcac gtcacttctt
6301 cagtcgtgct ggcactgttg gagacacagt gcctgaagac ctgtacatta aaggtaacga
6361 cagtcagtca cagaaggccc ttgcgtcttc tgtgtatgtc cctactccta gtggctctat
6421 ggtgacttct gaagcccagc tcttcaacaa gccttactgg ctgcagcgtg ctcaagggca
6481 caataatggc gtatgctggg aaaatcagct gtttgtaaca gttgtagata ctacacgtag
6541 cacaaacatg acattgtctg ctactgctac cactgaggca acatataaag ctagcaattt
6601 taagcagtac acacggcact gtgaagagtt tgatttgcag tttatttttc agctgtgcat
6661 tgttgacttg tccccagaag ttatggccta tatccatact atgaaccctg acattctaga
6721 tagctggaac ttaggtatac aacctcctcc tactggtact ctagaagaca cgtataggta
6781 tcttaagtct gaagctatac ggtgccaagc taaagttcct cctaaagaaa aagttgatcc
6841 ttatgataag tattcttttt ggaaagtaga tttacgtgaa cggttctcct ctgatttaga
6901 tcaatatcct ttaggccgca agtttctgtt gcagtcaggc ttgcgtgcac ggccgcggct
6961 acctaagccg ccatctagaa agcgcccctc tgttattgcc cctccgccta ctgcatcaac
7021 gtctgttgct gctgctgcaa agcgcaggcg gcggtgacct ttgtcttgtt tgtttgtgtt
7081 tgtgtctcat atatgtgcta tgtattatgt gttgttttac atgtttgtta aagccctgtg
7141 tttgtgtcac tgtaactgtg agtaatacat gtcatgtgtg tcatatgttt atttgtgtgt
7201 tgcgtgtata tgtgcgtctg agtacttgta gctgtgtgtg tgtcttactt atacagcgtc
7261 cattttgtgc tttcctccat cttcttcttg cagtttagca accgttttcg gtcgctgtga
7321 catttaggcg ggaactgact cactgtgcaa ccagtttcgg ttgtgtagtg tgccaacaac
7381 gctattaagc aagcactttc tttgccaact taaatacatt ttgcatctta gtcaaacttc
7441 ctttgcactt tatagagctt ttaacggatt aagctgtcag acagttatta caaattgcaa
7501 aatgttctgc caaaacacac cactcccggt cgctgactgt actacaacct tttagttatt
7561 gttaacaaca attatctgtt ttagtaaaag tatgaggaac cgtttacggt tgcataagca
7621 ccggtatcgg tcgagtataa aaggggattc ctgcaaa
//
