LOCUS KM203656 7037 bp RNA linear VRL 25-JUN-2018
DEFINITION Orivirus A strain chicken/Pf-CHK1/2013/HUN, complete genome.
ACCESSION KM203656
VERSION KM203656.1
KEYWORDS .
SOURCE Orivirus A
ORGANISM Orivirus A
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Picornaviridae; Paavivirinae; Orivirus.
REFERENCE 1 (bases 1 to 7037)
AUTHORS Boros,A., Pankovics,P., Adonyi,A., Phan,T.G., Delwart,E. and
Reuter,G.
TITLE Genome characterization of a novel chicken picornavirus distantly
related to the members of genus Avihepatovirus with a single 2A
protein and a megrivirus-like 3' UTR
JOURNAL Infect. Genet. Evol. 28, 333-338 (2014)
PUBMED 25445649
REFERENCE 2 (bases 1 to 7037)
AUTHORS Boros,A. and Reuter,G.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2014) Regional Laboratory of Virology, ANTSZ,
Baranya County Institute of State Public Health Service, Szabadsag
u. 7, Pecs H-7623, Hungary
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7037
/organism="Orivirus A"
/mol_type="genomic RNA"
/strain="chicken/Pf-CHK1/2013/HUN"
/isolation_source="cloacal sample"
/host="Gallus gallus domesticus (domestic chicken)"
/db_xref="taxon:2170052"
/country="Hungary"
/collection_date="2013"
5'UTR 1..734
CDS 735..6659
/codon_start=1
/product="polyprotein"
/protein_id="AIV09099.1"
/translation="METVKEIAAKTLAPLTNDVLSAAEQIAGLVVTEPTDDAHQITVN
PSANSAIVNSTPPVSDAELVSVQQTSSTDDMYSCAYEPSVGEENVTRYTEIMHGSYST
SNAPFDVIAHRLTPGCFFDDDEDPAKGQCQRFCFLRCGFEFSLNVTTPMGGQGALVLL
YLPPGFAGLVNSSSKLDNCARGSLFNFPHVIIDISLANSSTLTIPYMSYKNYFNITGS
EQLTSPKMGSGRICVVALTKYNCGASTTNSIQFTLFGQMLDADLQCPRPLNLNAQGLQ
RVSPTKHTTVSFSHTPPMAINSTPGCVNLSSFVTGNAAESTSLACEETMVDLKTAGAR
SAISDLKTVLRRWQVYAVSNVTLNTQGAVTVYPVNIVTAGTGTDVQNNSLFLICSNFQ
FFRGSLELRALVITSKGMSVKYKLGWFRSNTTSTVTYTQTRNTLFVVGDSDGPPPVLT
IPYSNDKFRCAVGGQYGTAYFAVVNKTATNVICPTTCSVVLQIRAGPDFELSVPQYSD
LKLQGIGDGVDESATCFVNFRLVDVPITTTPHTNVDAIFGRSVHMFDVTNQQGRYVIT
PMHNPRSDAHNKRSTFNILSCFAYFAGELTITAVNFSTQNEAYIGHTYTTENAGDLNE
LINYGTIIVPPGGVKTFNAPFYSETPFRVLNGEGALGYFLSYCADSTATIRVYASLRN
CQFVGMAASANYTVAPIAASAALSDQGPKAHKLLYKVTPSRQYCVEVSGRTYAMSVTG
AIEEVDGPSVVAILRPVDPEFLEAVMKHLSFDHRALATLHHNHAKLYDMLVTAFIYTC
SDQAPDMTAMITRAMAVFQDLVANDVVRLVLKTLVKALCYGIICVTATSVAPLAACAA
LALVDLSEIRLGAVAQGISEALVEGDIMGLVTVVLESIQGVDKDEIKATVMAASEAMG
DQAPSLKGFTDFTNACKTVGWWLETAIKIIKTVKDRLFSTRVKEASEWLGANRTRLYA
FIASVDVHLTKCATNPEYASDPSTQAIHLKLQSDLIKCREKFLETPFTDIKNLVSGAI
TRMERVKLTPVTMRPYRPEPYGVWIQGSAGAGKSFLSGLIATAVRKQFGFSTYYHPVA
SAHMDGYGSQEIHVFDDFGQCRDEADYTLVCNLISTSPFIVPKAELEAKGTYYNGRVV
ITTTNRMDFTSHKLFDPEALARRFPMSLHIRPRPEYSTPKGHLDVVAAIKDKKWNNVW
EVKTDKGWCSLNVDFMLGKIMDEIEARKEIVNIMDQGDWIVKYDGQEVLFSVDEVEQQ
PQLSDKLKRYIDRAITAATNFVTQNKWAFVAFGALSALCATAAVYVTKYKEDEGAYSG
GAPRNPRPKQYRDMKAPVSNQNLLNSVVESAILEVVDVTGHRSTALAIGKKHLVSYSH
GPELTRITFYKGPTSIPIEYAFNINYDGEPTDLVVYKVTGPTQLTSPYTHFSDQLGQH
PIMVSRRGGSLTVRPVDKIQPGGQITTLQGTTSSRTARYLGYNKEGDCGNVILTMHNG
NYRILGIHTAGNGCVGYCNIVYGVVSQGQVLQRRQSDKVVYVPHQTNLIKSPCWVPSC
ELEPAALSGRDPRLEEPRDLLVSNCDKYTGNIFEISTELCIDTVASVTSRLMEYGPYA
PVDYETSFTIVDMDWNTSPGHKYHNTCKQMLYESETFRSDVAKMLEVPTTYFVALLKD
ELRTREKVRKGKTRVIEAANFDYVVAYRMVMGEFLARVIEDPEKRAGICLGLNPYTDF
SAIVNSLYQYNLCLDFKGFDGSLSEGLMRAAVQCLANCSSNPELVVKIHEPTIVTTEI
VRDEEWLVSGGMCSGSPSTTLLNCVCNIFVHTAFALVYNLEFKVYCYGDDVIFSTKQQ
FDPRDYVEFMKEKFGMTVTSAQKTAEIAFVPPAEIEFLKRKPTIFQGVTVGALSLDSL
EHKIQWCRGLEAYKQQLKSFATELALHGRDQYTLLTSKLGIDIPWGAAKAWAKALLSS
VIEGLDPGPPDRIVSP"
3'UTR 6660..7037
ORIGIN
1 ttctctcccc cctctgggcc gccatccttg gccagaaacc ctcacgagtg cttgtggtag
61 gtcccaggcc aatattcttc gtaaggcttg gttccaattt tccaccactc gtgtttgggt
121 tctggcctat ggtacccaga ggggcggttt gggggaatta actccccctc ccctgtggtc
181 ctataccacc ccacacctct gtgggctttc tttactatct tcttgttttc cgacttttaa
241 acactaggca ggcgcgccta gtcatacacc gcccggctgg tctttccagc tcttgtgggc
301 ggtgcgcgct ggtccatcgt gcccagcgac atagcacctt gtggacacct ccgaacgccc
361 tcccctgtat ggggtggtgc ccaggggttt cagtgtggtg acacactccc tggggcccga
421 aaggctagtg tgcaacaggt gaggtacagc cagctgcccc cgtggctgga gggaccaagc
481 ttgtgaagca cacctcacct tcttgggggt gggctagtaa gtggtgaaag catagtgtcc
541 gtgtcgctgg ccaacacttt gggtcaagtc cagccactca gtgagtagat gcccaggagg
601 tacccctagt ggatctgact tggggcctgt tacttaatgc aggttaaaaa ctatgaaagc
661 tgagtagtgt agcccggctg gtggcttctc ttccttattc attctatttt atggtgacaa
721 acgcaactga agccatggag actgttaagg aaattgcagc caaaaccctg gcaccattaa
781 caaatgatgt cttgtcagcc gcagagcaga ttgctggtct tgtggtcacg gaaccaactg
841 atgatgctca ccagatcacc gtgaacccta gtgccaattc ggcaatagtc aattccacgc
901 cgccagtttc agatgcggag ctagtcagtg ttcagcagac ttcatccact gatgatatgt
961 acagctgcgc gtatgagcca tcggttggcg aggagaatgt cacccgctac acggaaatca
1021 tgcatggtag ttactccaca tctaatgcgc cgtttgatgt catagcccat agacttactc
1081 ccgggtgctt ctttgatgat gatgaagacc cggccaaggg ccagtgccag cggttttgct
1141 tcttgagatg tggttttgag ttctcgctca atgtcacgac ccctatgggt ggacagggtg
1201 cacttgtcct gttatacctt cccccaggtt tcgccgggct tgtgaactct agctctaagc
1261 tggataattg tgctcgcggc tcactgttca attttccaca tgtcattata gacatatcat
1321 tggctaattc atcaacacta actatcccat atatgtccta taagaactac tttaacatta
1381 cagggtccga gcagctcacc agccccaaga tggggtcggg tagaatttgc gttgttgccc
1441 tgaccaagta caactgcggg gcttcgacta ctaactccat acaattcaca ttgtttggtc
1501 aaatgcttga cgctgacctc cagtgcccta ggcccttaaa tctcaatgcc cagggccttc
1561 agagagtttc gccaactaag cacactactg tctccttctc gcacactcca ccaatggcca
1621 ttaactccac tcctggttgt gttaatttat cttcatttgt aaccgggaat gcagcagaat
1681 ctacttctct tgcctgtgag gagactatgg tggacctcaa aacagcaggg gcccggtcag
1741 ccataagcga cctcaagacc gtgttacgca gatggcaggt ttatgcagtg agcaatgtta
1801 ccctcaacac ccaaggggcg gtaacagttt atccagtcaa catagtcaca gcaggcacgg
1861 gcactgacgt ccaaaataac agtttgttct taatttgttc aaatttccag ttctttcgtg
1921 gcagtctgga gctgcgcgcc ctagttataa cctcaaaggg catgtcagtt aagtacaaac
1981 ttgggtggtt taggtctaat acaacatcaa ctgtcacata cacacaaact cgtaacacac
2041 tgtttgtggt tggtgatagt gatggccccc cccccgtcct gaccatacct tattccaacg
2101 ataaatttag gtgtgccgtg gggggacagt atgggacggc ttattttgca gtggtcaaca
2161 agactgctac gaatgttatt tgccctacga catgctcagt cgtgctccaa attcgagcag
2221 gaccagactt tgagctctcc gttccgcagt attcagactt gaaacttcag gggataggtg
2281 atggtgttga tgagtcagct acatgttttg tcaattttag gcttgttgat gtgcccataa
2341 ccacaacacc ccacacaaac gttgacgcta tctttggccg ctctgtccat atgtttgatg
2401 ttactaatca gcaggggagg tatgtgatca cccccatgca caatcctagg tcagatgccc
2461 acaacaagcg ttctactttc aatattctgt catgttttgc ctattttgct ggcgagttaa
2521 ctataacagc agttaacttc tcgacccaaa atgaggcata cataggccac acttacacaa
2581 cagaaaatgc gggcgacctg aatgagctca taaattatgg gaccataatc gtgccaccgg
2641 ggggtgtcaa gaccttcaac gcgccgttct actctgagac tcctttccgc gtccttaatg
2701 gcgagggagc cttgggttac tttcttagct actgtgctga tagtacagcc actattaggg
2761 tttacgcgtc tctgaggaac tgtcagtttg taggtatggc tgctagcgcc aattatactg
2821 tggcgcctat tgcagcttca gcagccctta gcgaccaagg gcctaaagca cataagctct
2881 tatacaaggt cacaccgtcc aggcagtact gcgttgaagt ctcaggacgc acatacgcta
2941 tgagcgtgac cggtgccatt gaggaagttg atggcccgag tgttgtggcc atattgaggc
3001 cggttgatcc tgagttcctt gaggcagtga tgaagcatct ctcatttgac catcgtgcac
3061 ttgccaccct ccaccacaac catgccaagc tatacgacat gctcgtcact gctttcatat
3121 acacatgcag tgaccaagct cctgacatga ccgccatgat aacacgagcc atggctgttt
3181 tccaagacct agtggccaat gatgtggtgc gactggttct taagactttg gttaaggccc
3241 tttgttatgg gattatttgt gtcactgcca cctccgtcgc cccactggct gcttgtgcag
3301 cactggcgtt ggtcgaccta tctgagatcc gcctcggagc cgtggcccaa ggaatatccg
3361 aggctcttgt tgagggcgat attatgggct tggtcacagt ggtcctagag tcaattcaag
3421 gtgttgacaa agatgaaatt aaggccacgg tcatggcggc aagtgaagcc atgggtgacc
3481 aagctccgtc actcaaaggt ttcacggatt tcaccaacgc ttgcaagact gttggttggt
3541 ggcttgagac tgccattaaa ataatcaaga cagtgaagga taggctcttc tccactaggg
3601 ttaaggaagc atcagagtgg ctgggcgcca acaggacacg cctttatgcc tttatagcgt
3661 ccgttgatgt tcacctcacc aaatgtgcca ccaaccccga gtacgcttct gacccttcca
3721 cccaagccat ccatctgaaa ctgcaatctg acctcatcaa gtgtagggaa aagtttttgg
3781 aaactccatt cactgacatc aagaatttgg ttagcggggc tataactagg atggagagag
3841 tcaaattaac tcctgtcacc atgaggccct atcggcccga gccctatgga gtgtggatac
3901 aagggagtgc cggggccggt aagtccttcc tcagtggctt gatagcaact gccgttagga
3961 aacagttcgg attttccact tactatcacc cggttgcctc cgcacacatg gatgggtacg
4021 ggtcccaaga gattcacgtg tttgacgatt tcggccagtg tagagacgag gctgattaca
4081 ccttggtatg taacctgatt agcaccagcc ccttcatagt ccctaaggct gagcttgagg
4141 caaagggcac gtactataac gggagggttg tcataaccac caccaaccgg atggacttca
4201 ccagccacaa gttgtttgac ccggaggcat tagccagacg atttccaatg agcctacata
4261 ttaggcctag accagagtac tccactccta aaggtcatct tgatgttgtc gctgccataa
4321 aagacaagaa gtggaacaat gtgtgggagg tgaagacaga taaagggtgg tgtagtttga
4381 atgttgactt catgcttggt aagataatgg atgagatcga ggcccgaaaa gagatcgtta
4441 acatcatgga ccagggtgac tggatagtca agtacgatgg tcaggaagta ctcttttctg
4501 tcgatgaagt agagcaacaa ccccaactct cggacaagtt aaagagatac atagacaggg
4561 ccattactgc tgccaccaac tttgtcactc agaacaaatg ggcatttgtt gcctttggtg
4621 cccttagcgc tctctgcgcc actgcagctg tttacgtcac caaatataag gaggatgaag
4681 gggcctactc agggggtgcc cctaggaacc cccgtcctaa gcaatatcgg gacatgaagg
4741 ctccagttag caatcaaaac ctcctcaatt ctgtggtgga gagtgccatt cttgaggttg
4801 tggacgtaac tggccataga tccacggccc tagccatcgg aaaaaagcac ctggtttctt
4861 attcacatgg cccagagctc actaggataa cgttctacaa aggacccacc agtatcccca
4921 tcgagtacgc tttcaatatc aattacgatg gtgagcctac tgacctcgtg gtgtacaaag
4981 ttactggccc tactcagctc acatcaccat acacccactt ctccgaccag ctgggccagc
5041 acccgattat ggttagcaga cggggtggtt cccttacggt gcggcccgtc gacaaaatac
5101 aacctggagg ccagatcacg acacttcaag gcaccacatc ttcccggaca gctcgatacc
5161 ttgggtacaa caaagagggt gactgtggta acgtcatcct cacgatgcat aatggcaatt
5221 acaggatatt gggcattcac acggcaggga atggatgtgt cggctactgt aacattgttt
5281 atggtgtagt ctcacaaggc caggtgctgc agcgccgaca gtctgacaaa gtggtgtacg
5341 ttcctcacca aaccaacctt ataaagtcac catgttgggt accgagctgc gagttagaac
5401 cagccgccct ttcggggcgc gacccccgcc tggaagaacc acgagacctc ctggtttcga
5461 attgtgacaa gtacactggc aacatttttg agatctccac tgagctatgc attgacacag
5521 tggcctccgt tacatctagg ctgatggagt atggcccata cgctcctgtg gattacgaga
5581 catcattcac cattgttgac atggactgga atacgagccc tggccacaag taccacaaca
5641 cttgtaaaca gatgttgtat gaatctgaga ccttccggtc cgatgtggca aagatgcttg
5701 aagtcccgac cacctatttt gttgctctct tgaaagatga attgcgtact agggagaaag
5761 tgaggaaagg gaaaacacgg gtcatagagg cagccaattt tgattatgtt gtggcttatc
5821 gcatggtcat gggtgagttt ctggcacgtg ttatagaaga tccagagaaa cgtgctggta
5881 tttgtttggg cctgaatccc tacactgatt tttcggctat agtcaactca ctttatcagt
5941 ataatctttg cttagacttc aaaggttttg acggtagctt gtccgagggc ctcatgagag
6001 ctgcagttca gtgtttagcc aactgttcat ctaatccaga gctagtcgtg aagattcacg
6061 agcccaccat cgtgacgaca gagatagtta gggacgaaga atggctagtc tcggggggca
6121 tgtgctctgg ctcacctagc accacacttc taaactgcgt gtgtaatatt tttgttcaca
6181 cggcctttgc actagtctac aatctggaat tcaaagttta ctgctacggg gatgatgtca
6241 tcttttcgac gaagcagcag tttgaccccc gagactatgt agagttcatg aaggaaaaat
6301 tcggtatgac tgtcacttca gctcaaaaga ctgcggagat tgcgtttgtg ccaccagctg
6361 agatagaatt tttgaaacgg aaaccgacaa tcttccaagg agtaacagta ggcgcgctta
6421 gccttgactc cctagaacac aagatccagt ggtgccgagg gcttgaggcc tataagcagc
6481 aattgaagag ttttgcgact gaactcgccc ttcatggccg cgatcagtat accctgctta
6541 catcaaaact aggtatagac ataccttggg gtgctgctaa ggcctgggcc aaagccctgc
6601 tttccagtgt catcgaaggg ctcgacccgg ggccgccaga tcgcattgtg tcaccctagc
6661 tgacgctagg cgccctagct catgggccat aaactgagta gccgtggagc cggctataca
6721 aatctcccgc actctagctc acgagttata aactgagtag ccgtggggtc ggctatataa
6781 attcccccct agctcacggg tcactgagta gccgcttgtg atcggctata taaattcact
6841 agccactggg ggccataacc cagaaacaca ggactagatc ctgggagcac ggtgcccctg
6901 gcacagcgct ttgtatttgt aaatatgtac tataactatt gtattgtttt gtgtcttcag
6961 tagtttgtga tttcatattg attatactta ctttatgata attatagtcc caaaacccca
7021 accctataat tattagt
//
