LOCUS KM598414 4620 bp DNA linear VRL 01-APR-2015
DEFINITION Gallus gallus enteric parvovirus isolate ChPV 367, complete genome.
ACCESSION KM598414
VERSION KM598414.1
KEYWORDS .
SOURCE Gallus gallus enteric parvovirus
ORGANISM Gallus gallus enteric parvovirus
Viruses; Monodnaviria; Shotokuvirae; Cossaviricota;
Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae;
Aveparvovirus; Aveparvovirus galliform1.
REFERENCE 1 (bases 1 to 4620)
AUTHORS Zsak,L., Cha,R.M., Li,F. and Day,J.M.
TITLE Host Specificity and Phylogenetic Relationships of Chicken and
Turkey Parvoviruses
JOURNAL Avian Dis. 59 (1), 157-161 (2015)
PUBMED 26292551
REFERENCE 2 (bases 1 to 4620)
AUTHORS Zsak,L., Cha,R.M., Li,F. and Day,J.M.
TITLE Direct Submission
JOURNAL Submitted (19-SEP-2014) Southeast Poultry Research Laboratory,
USDA/ARS, 934 College Station Road, Athens, GA 30677, USA
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4620
/organism="Gallus gallus enteric parvovirus"
/mol_type="genomic DNA"
/isolate="ChPV 367"
/host="Gallus gallus"
/db_xref="taxon:1633569"
/country="USA"
CDS 1..2085
/note="non-structural protein"
/codon_start=1
/product="NS1"
/protein_id="AKA44545.1"
/translation="MAFPTRGGFSAILNLPSDLIVGQKNMPVFECVTAGYTSPDSGEF
VASRFPPNHELRQEIRNFIGNPEWDDPDLTWIDFHIQLAKHAIDVETKLNPNLQIFWQ
MEKSSQSGRYHLHLLFVEGCTSRQITWIVKRMRRELCNKAAEMLHMFCPDFPKSQIWG
SLVNIQNAMLSLNRGYSPRIGKPIPQPVNPYSFLKYYMFNSAKMSFLRGATPKLAEKL
PIGTRYARFEGSPDLDEGPEIPSQELTPGDTLPVCYVSTETGWGNGGGETVIKTSIIE
KLCMEALRLCRENHIFTMKAFKLKFPDKFMQFSSRNQGLVKLEETINLYCETIINEHD
AWEIAKSIHGDVDTADLDDNLAIRLCSYQGYSPKYVARLILCWLSGQAGKKNALYFHG
PANTGKTMMAESICKMVQIYGNVNHNNKNFPLNDCHNKAVLWWEECSMTEEHVESAKC
IMGGSSVRIDKKNQDSVLLCKTPIVITSNNDITQVSSRNAISTVHAAAIRARCLKFTF
NNWLTSNWGLITVEQMYQFLCWGELDGIPNVDSLLKDHPEFNGTLPFNQPKGKFCADC
VNQFSTATNLTVCPACSGWTRKPFSEEEEPPYTGSESGLFEKANEGKNEVPGIYPVNS
GSRLIPEAPILQRPSNFWETEIPSESSGFPDEPDFTASAKLLLKLDDLHLESDLTVEQ
DPLECKKCCLVQ"
CDS 2119..2328
/codon_start=1
/product="NP1"
/protein_id="AKA44546.1"
/translation="MIYLPLLSYFATKRSPHPRHPQSISLNPLVWYNGGTSKLNGWKD
TLESGGLLFLISCVGIGIILHKLRR"
CDS 2286..2591
/codon_start=1
/product="NP2"
/protein_id="AKA44547.1"
/translation="MCWYRNNIAQIETVEGDPCTNANVFHELYLPIKQHAMDARMLKM
KIEDKILKGDFSHDVHLDMTLTQCIQTTLSDDPAGIWPCVDRLANYCNVILASIGTQ"
CDS 2588..4615
/note="capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AKA44548.1"
/translation="MKYKAPKGYVPSLPTTDEEAYHHTRWWLDHVENYGKNKSIGRGK
GKARKELTPQQKAERKRFFITQAQKNKKPNYGIPSSSQHKEFFKNHQGAQGGKAKQKT
KHLESQAPQRQEDPEEGPAPKQPRVEEHPFNQEELEEMMADENEPDQSGIPMEMSDGP
GTVGGGGGGGIGHSTGNWSCDTIWSGNTCKTYASRHCVCLMRDMDQYKAIGNTNGQHG
LNSENQTQYFGFSTPWNYIDFNQYSVHFSPRDWQHLVNNYSRWRPRAVHVKIFNLQVI
QKTVTDSGTQYSNDLTGTIQIFADQEGKYPRLLYPNQTTLMGPFPSNIYYLPQYAYMT
SMYNSGGATPTTWWGFPTRESAFYCLDESPSQMLRTGNEWETTFVFPPSTQWCNNRIS
TVSITQRQNPLYDTWNVNGRGDDAKRGNFCTWRSPWYPGPYIYLTDTTAATQTLENLA
NVAVGPDGMPLAPGMPQYRPETDKDEYLHTFWVPKKIGMNEGDVRNEQIQASTANKVQ
VDTSTLYNTCPRSGYYSTVSQGGAPAPIVWSGCVPGMIWDNRPATYFDPIWQQFPETD
EQFKIVSQLGGIPVKQSPGHIFVKVTPKPTGAANGYIDEYCTFTCTVEIDWELEPINT
HRWNMRSMISYETTDAKAGRQIVDESGQYQLNINSADITRLYSTKRAPRTN"
ORIGIN
1 atggcattcc caacacgcgg tgggttttcc gctattctaa atcttcccag cgatttaatc
61 gtgggacaga aaaatatgcc tgtattcgag tgtgtaactg ccggttacac ttctccggat
121 tcaggcgaat tcgtggcttc tagatttcca cccaaccacg aattgagaca agaaattaga
181 aattttatcg ggaacccaga atgggacgat ccagatttga catggataga tttccacatt
241 caattggcga aacacgccat agacgtggaa actaaactca atccaaattt acaaattttc
301 tggcaaatgg aaaaatctag tcagtcggga agatatcatc tccatttact gttcgtagaa
361 ggatgtactt ccaggcaaat tacatggata gtcaaaagaa tgagaaggga actttgcaac
421 aaagctgcag aaatgttgca catgttttgt cctgatttcc ccaaaagtca aatttgggga
481 tcgctggtga atatccaaaa cgctatgctt tcactgaata gaggatactc accgagaatt
541 gggaaaccaa tcccccaacc agtgaatcca tactcatttc taaaatacta catgttcaat
601 tctgctaaaa tgagctttct gagaggggct actccaaaat tagctgaaaa attaccaatt
661 ggtacaagat atgctagatt tgaagggtct cctgacctgg acgagggtcc cgaaattcca
721 tcgcaggaat taactccagg ggacactcta cctgtatgct atgtaagtac tgaaactggt
781 tgggggaacg gtggggggga gaccgtgatc aaaaccagta tcattgaaaa attatgcatg
841 gaagcattaa gattatgcag agaaaatcac atttttacca tgaaagcatt taagctaaaa
901 ttcccagaca aattcatgca gttcagttcg cgaaatcagg ggttagtgaa attagaagaa
961 acaataaacc tgtattgtga gaccattatc aacgagcacg atgcgtggga aatagctaaa
1021 tcaatacatg gagatgttga cacagctgat ctagatgata atttagccat ccggttatgc
1081 agctaccaag gatatagtcc aaagtacgtt gctagactga tattgtgctg gctatccgga
1141 caagcaggga aaaaaaacgc attatatttc cacggaccag ccaatactgg taaaacaatg
1201 atggcagaaa gcatatgcaa aatggtacaa atatacggta acgtaaatca taacaacaaa
1261 aacttcccac tcaacgactg tcacaacaaa gcagtacttt ggtgggaaga atgtagcatg
1321 acggaagaac acgtagaatc tgcaaaatgt atcatggggg gatcctcagt gagaatagat
1381 aaaaaaaatc aagattcagt tctactatgt aaaactccaa tcgttattac ttctaataac
1441 gatatcactc aagtttccag caggaatgcc atctcaacag ttcatgcagc tgcaattaga
1501 gcgagatgtt taaaatttac atttaacaat tggctaactt caaattgggg tctaataacc
1561 gttgaacaaa tgtaccaatt tttatgctgg ggagaattag acggcattcc aaacgtggat
1621 agcctcttaa aagatcatcc cgaatttaac gggactttgc catttaacca acccaaaggt
1681 aaattttgtg ccgattgtgt taaccagttc agcactgcaa ctaacctgac cgtgtgccca
1741 gcctgctccg gttggacaag aaagcccttc tccgaagaag aggaaccccc ctatactggt
1801 tctgaatccg ggctctttga aaaagccaac gaaggtaaga atgaggtccc agggatttat
1861 cccgtaaata gtggatccag gttaatccct gaggccccaa tcttacagag accatcgaac
1921 ttctgggaga cggagatccc cagcgaatcg agtggatttc cagacgagcc agacttcacc
1981 gcaagcgcaa agcttctcct gaagctagac gatctccacc tagaaagcga tctgacagtg
2041 gagcaggatc ctctggagtg caaaaagtgc tgtctggttc aataggccaa cttgaaggta
2101 aaagcataac atttactgat gatctacctt cccttactga gttattttgc gacgaaacgc
2161 tccccccatc cccgacatcc ccaatcaatc tccctgaacc ctctcgtgtg gtacaatggg
2221 gggacttcaa agctcaatgg gtggaaggat acattggaaa gtggagggtt gctttttcta
2281 atttcatgtg ttggtatagg aataatattg cacaaattga gacggtagaa ggtgatccat
2341 gtacaaatgc taacgttttt catgagttat atctccctat caagcaacac gccatggacg
2401 cacgcatgtt gaaaatgaaa attgaagaca aaatactaaa aggcgacttc tcacacgatg
2461 tacacttaga catgacacta acacaatgca ttcaaacaac acttagcgat gacccagcag
2521 gaatatggcc atgtgtagac aggttagcta attactgcaa tgttatattg gcttctatag
2581 gcacacaatg aaatacaaag ctccgaaagg ctacgtccct tcactaccca ctactgacga
2641 agaagcatat catcatacta gatggtggct ggatcatgtt gaaaattatg gaaaaaataa
2701 atctattggt agaggcaaag gaaaagctag gaaagagctc acaccacaac aaaaagctga
2761 acgcaaacgc ttttttatca cgcaggcaca aaaaaataaa aaacctaatt acggcatccc
2821 atcttcatcg cagcacaaag agtttttcaa aaatcatcag ggggcacaag ggggaaaagc
2881 aaagcaaaaa accaaacatt tagaaagtca agcaccacaa agacaagaag acccagagga
2941 agggcccgca cctaaacaac ctagagtaga agagcatcca tttaatcaag aagaattaga
3001 agaaatgatg gccgatgaga atgaacccga tcaatctggg atcccaatgg aaatgagcga
3061 tgggccggga accgtagggg gtggtggtgg tgggggaatc gggcactcta ccggtaattg
3121 gagttgtgat actatatggt ctggaaatac atgtaaaacc tatgcaagcc gccactgtgt
3181 ctgtcttatg cgtgacatgg accaatacaa agcaattggc aacactaacg gtcaacacgg
3241 gttaaattca gaaaatcaaa cccagtattt cgggttctcc actccgtgga attacattga
3301 ttttaatcag tacagcgtgc actttagccc acgcgattgg caacacctag ttaacaatta
3361 ttcgagatgg cgtccacgcg ccgtacacgt gaaaatcttt aacctgcaag tcatccaaaa
3421 aacagtaaca gatagcggta cccagtactc taatgactta acagggacaa ttcaaatatt
3481 tgcagaccaa gaaggcaaat atccacgtct attatacccc aaccaaacaa ccctaatggg
3541 tccatttcca tccaatatat attatctgcc ccaatacgca tacatgacaa gcatgtataa
3601 ttctggtggc gccactccga cgacatggtg ggggttccca acacgcgaaa gcgcatttta
3661 ttgtttagac gagagcccat cacaaatgtt aaggaccggt aatgagtggg aaactacatt
3721 tgtttttcca ccgagtacac aatggtgtaa taataggata tctaccgtgt ccattacaca
3781 gagacaaaac ccattatacg acacttggaa tgtaaatggc agaggagatg acgccaagag
3841 aggcaatttc tgtacctgga gaagtccatg gtatccagga ccttacattt acttaactga
3901 tacgacagca gctacacaaa cattagagaa cctcgctaat gtagctgttg gtccagacgg
3961 tatgcctcta gcgccaggga tgccacaata taggcccgag actgataagg atgaatattt
4021 acatacgttc tgggtaccca aaaagatcgg aatgaatgag ggtgacgtgc gtaatgaaca
4081 aatccaagca tctactgcaa acaaagtaca agtagacacg tcaacattat ataatacttg
4141 tcctagatca ggatactatt ctactgtatc tcaaggagga gcccccgcac ctatcgtttg
4201 gtcaggatgt gtacctggca tgatatggga caataggccg gccacttatt tcgatccaat
4261 atggcaacaa ttcccggaaa ccgatgagca gttcaaaatc gtctctcaat taggaggcat
4321 acccgtgaaa caatctccgg ggcacatttt cgttaaagtc acgcctaagc caaccggggc
4381 tgcaaatggt tacatcgatg aatattgtac ctttacttgc actgtcgaaa tcgattggga
4441 gttagaacca attaacactc acagatggaa catgagaagt atgatttcgt acgagaccac
4501 cgatgccaaa gctggaagac aaattgtcga tgaaagtggt caataccagc ttaatattaa
4561 ctcggctgac attactcgtc tgtattctac taagcgcgcg ccgcgaacca actaatgtaa
//
