LOCUS KP284572 7581 bp DNA linear VRL 15-APR-2015
DEFINITION Avian leukosis virus subgroup J isolate PDRC-59831, complete
genome.
ACCESSION KP284572
VERSION KP284572.1
KEYWORDS .
SOURCE Avian leukosis virus ev/J (ALV-J)
ORGANISM Avian leukosis virus ev/J
Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes;
Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus;
Avian leukosis virus.
REFERENCE 1 (bases 1 to 7581)
AUTHORS Malhotra,S., Justice,J. IV, Lee,N., Li,Y., Zavala,G., Ruano,M.,
Morgan,R. and Beemon,K.
TITLE Complete genome sequence of an american avian leukosis virus
subgroup J isolate that causes hemangiomas and myeloid leukosis
JOURNAL Genome Announc 3 (2) (2015)
PUBMED 25858851
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7581)
AUTHORS Malhotra,S., Justice,J. IV, Lee,N., Li,Y., Zavala,G., Ruano,M.,
Morgan,R. and Beemon,K.
TITLE Direct Submission
JOURNAL Submitted (17-DEC-2014) Biology, Johns Hopkins University, 3400 N
Charles Street, Baltimore, MD 21218, USA
FEATURES Location/Qualifiers
source 1..7581
/organism="Avian leukosis virus ev/J"
/proviral
/mol_type="genomic DNA"
/isolate="PDRC-59831"
/host="Gallus gallus"
/db_xref="taxon:1401444"
/country="USA"
/collection_date="30-Apr-2007"
/note="subgroup: J"
repeat_region 1..314
/note="5'LTR"
/rpt_type=long_terminal_repeat
repeat_region 1..213
/note="U3"
5'UTR 214..592
repeat_region 214..234
/note="R"
repeat_region 235..314
/note="U5"
gene 593..2698
/gene="gag"
CDS 593..2698
/gene="gag"
/codon_start=1
/product="Gag"
/protein_id="AJG42160.1"
/translation="MEAVIKVISSACKTYCGKTSPSKKEIGAMLSLLQKEGLLTSPSD
LYSPGSWDPITAALSQRTMILGKSGELKTWGLILGALKAAREEQVTSEQAKFWLGLGG
GKVSPPGPECIEKPATERRIDKGEEARETTAQRDAMMAPEETVTPKTVGTSCYHCGTA
IGCNCATASAPPPPYVGSGLYPSLAGVGEKQGQEGDTPPGAEQPRAEPGHAGQAPGPA
LTDWARIREELASTGPPVVAMPVVIKTEGPTWTPLEPKLITRLADTVRTKGLRSPITM
AEVEALMSSPLLPHDVTNLMRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQ
GRGERTNLDRLKGLADGMVGNPQGQAALLRPGELVAITASALQAFREVARLAEPAGPW
ADITQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPST
LTTPGEIIKYVLDRQKTAPLTDQGIAAAMSSAIQPLVMAVVNRERDGQTGSGGRARGL
CYTCGSPGHYQAQCPKKRKSGNSRERCQLCDGIGHNAKQCRKRDGNQGQRPGRGLSSG
PWPGPEPPAVSLAMTMEHRDRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISE
EDWPTDWPVVDTANPQIHGIGGGIPMRKSRDMIELGVINRDGSLERPLLLFPAVAMVR
GSILGRDCLQGLGLRLTNL"
gene 2716..5337
/gene="pol"
CDS 3025..5337
/gene="pol"
/codon_start=1
/product="Pol"
/protein_id="AJG42161.1"
/translation="MVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLP
QGMTCSPTICQLIVGQVLEPLRLRHPSLRMLHYMDDLLLAASSHDKLEAAGEEVISTL
ERAGFTISPDKVQREPGVQYLGYKLGSTYVAPVGLVAEPRIATLWDVQKLVGSLQWLR
PALGIPPRLMGPFYEQLRGTDPNEAREWNLDMKMAWREIVQLSTTAALERWDPALPLE
GAVARCEQGAIGVLGQGLSTHPRPCLWLFSTQPTKAFTAWLEVLTLLIAKLRASAVRT
FGKEVDILLLPACFREDLPLPEGILLALKGFAGKIRSSDTPSIFDIARPLHVSLKVRV
TDHPVPGPTVFTDASSSTHKGVVVWREGPRWEIKEIADLGASVQQLEARAVAMALLLW
PTTPTNVVTDSAFVAKMLLKMGQEGVPSTAAAFILEDALSQRSAMAAVLHVRSHSEVP
GFFTEGNDVADSQATFQAYPLREAKDLHTALHIGPRALSKACNISMQQAREVVQTCPH
CNSAPALEAGVNPRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVT
SVAAQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAM
VERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPIQKHW
RPTVLTEGPPVKIRIETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDITQ
KDEVTKKDEASPLFAGISDRAPWEGEQEGL"
gene 5267..6982
/gene="env"
CDS 5267..6982
/gene="env"
/codon_start=1
/product="Env"
/protein_id="AJG42162.1"
/translation="MRRALSLQAFLTGHPGKASRKDSKKKPPATSKKDPEKTPLLPSR
GHFFFQMILVCMVIIFVVPGVGGVHLLQQPGNVWVTWANKTGQTDFCLSLQSATSPFR
TCLIGIPQYPLNTFKGYVTNVTACNNDTDIASQTACLIKALNTTLPWDPQELDILGSQ
MIKNGTKRTCVTFGSVCYEGNNGSRDCHNFDGNFNGTGGAEAELRDFIAKWKSDDPLI
RPYVNQSWTMVSPINTESFSISSRYCGFTSNETRYYPKNVSDWCGSKRGKWSAGYRNG
TECSSNTTDCGGNCTAEWNYYAYGFTFGKQPEILWNNGTAKALPPGIFLICGDRAWQG
IPRNALGGPCYLGQLTMLSPNFTTWMTYGPNITGHRRSRRSVSHLSPNCSDEIQLWSV
TARIFASFFAPGVAAAQALKEIERLACWSVKQANLTSLILNAMLEDTNSIRHAVLQNR
AAIDFLLLAQGHGCQDVEGMCCFNLSDHSESIHKALQAMKEHTEKIRVEDDPIGDWFT
RTFGSLGGWLAKGVKTLLFALLVIVCLLAIIPCIIKCFQDCLSRIMYQFMDERIRYHR
IRERL"
3'UTR 6983..7482
repeat_region 7268..7581
/note="3'LTR"
/rpt_type=long_terminal_repeat
repeat_region 7268..7482
/note="U3"
repeat_region 7483..7503
/note="R"
repeat_region 7504..7581
/note="U5"
ORIGIN
1 tgtagtactc ttatgtaacg atgaaacagc aaaatgcctt ataaggaaga aaaggcactg
61 tgcacgtcga ttggtagaag taaggtggta tgatcgtggc atgatcatgc cttattagga
121 aggcagcaga cgggtcttac atggattgga cgaactcctt aattccgcgt tgcagagata
181 ttgtatttaa gagcctagcc tgatacaata aacgccattt tacctcccac cacattggtg
241 tgcacctggg ttgatggccg gaccgtcgat tccctgacga ttgcgagcac ctgaatgaag
301 tgaaaggctt catttggtga ccccgacgtg atagttaggg aatagtggtc ggccacagac
361 ggcgtggcga tcctgtcctc atccgtctcg cttattcggg gagcgggcga tgaccctagt
421 agagggggct gcggcttagg agggcggaag ctgagtggcg tcggagggag ctctactgca
481 gggagccaac ataccctgcc gagcactcag agggtcgttg gaagacggga aggaagcccg
541 acgactgagt ggtctgcccc agacgtgatt ttggtcgcct ggaggatcaa gtatggaagc
601 cgtcataaag gtgatttcgt ccgcgtgtaa aacctattgc gggaaaacct ctccttctaa
661 gaaggaaata ggggccatgt tgtccctgtt acaaaaggaa gggttgctta cgtctccctc
721 agacttatac tccccggggt cctgggaccc cattaccgcg gcactctccc agcggacaat
781 gatacttgga aaatcggggg agttaaaaac ctggggattg attttggggg cactgaaggc
841 ggctcgagag gaacaggtta catctgagca agcaaagttt tggttggggc tagggggagg
901 gaaggtctct cccccaggtc cggagtgtat cgaaaaaccg gcgacggagc ggcggatcga
961 caaaggggag gaagcgagag agacaactgc gcagcgagat gcgatgatgg cgccggagga
1021 aacggtcaca cctaaaaccg ttggcacgtc ctgctatcat tgcggaacag ccattggctg
1081 taattgcgcc acagcctcgg ctcctcctcc tccttatgtg gggagtggtt tgtatccttc
1141 cctggcgggg gtgggagaga agcagggcca ggagggtgac acgcctccgg gggcggaaca
1201 gccaagggcg gagccagggc atgcgggtca ggcccctggg ccggccctga ctgactgggc
1261 aaggataagg gaggagcttg cgagcactgg tccgcccgtg gtggccatgc ctgtagtgat
1321 taagacagag ggacccacct ggacccctct ggagccaaaa ttgatcacaa gactggctga
1381 tacggtcagg accaagggct tacgatcccc gattactatg gcggaggtgg aagcgcttat
1441 gtcctccccg ctgctgccgc atgacgttac gaatctaatg agagttattt taggacctgc
1501 cccatatgcc ttgtggatgg acgcttgggg tgtccaacta cagacggtta tagcggcagc
1561 cactcgcgac ccccgacacc cagcgaatgg tcaagggcgg ggggaacgga ctaatttgga
1621 tcgcttaaag ggtttagctg atgggatggt gggcaacccg cagggtcagg ccgcattatt
1681 aagaccgggg gaattggttg ctattacggc atcggctctc caggcgttta gagaggttgc
1741 ccggctggcg gaacctgctg gtccatgggc ggacattacg cagggaccat ctgagtcctt
1801 tgttgatttc gccaatcggc ttataaaggc ggttgagggg tcagatctcc cgccttccgc
1861 gcgagctccg gtgatcattg actgttttag gcagaagtca cagccagata tccagcagct
1921 tatacgggca gcaccctcca cgctgaccac cccaggagag ataatcaaat atgtgctgga
1981 cagacagaag actgcccctc ttacggatca aggcatagcc gcggccatgt cgtctgctat
2041 ccagccctta gttatggcag tagtcaatag agagagggat ggacaaactg ggtcgggtgg
2101 tcgcgcccga gggctctgct acacttgtgg atccccggga cattatcagg cgcagtgccc
2161 gaaaaaacga aaatcaggaa acagccgtga gcgatgtcag ctgtgtgacg gaataggaca
2221 caacgctaaa cagtgtagga agcgggatgg caaccagggc caacgcccag gaagaggtct
2281 ctcttcgggg ccgtggcccg gccctgagcc gcctgccgtc tcgctagcga tgacaatgga
2341 acatagagat cgccccttgg ttagggtcat tctgaccaac actgggagtc atccggtcaa
2401 acagcgttcg gtgtatatca ccgcgctgtt ggactccggg gcagacatca ctattatttc
2461 ggaagaggac tggcctactg attggccggt ggtggacact gcgaacccgc agatccatgg
2521 cataggaggg ggaattccca tgcgaaaatc tcgtgacatg atagagttgg gggttattaa
2581 ccgagatggg tctttggagc gacccctgct cctcttcccc gcagtagcta tggttagagg
2641 gagcatcctg gggagagatt gtctgcaggg cctagggctc cgcttgacaa atttataggg
2701 agggccactg tttttactgt tgcgctacat ctggctattc cactcaagtg gaagccagac
2761 cacacgcccg tgtggattga ccagtggccc cttcctgagg gtaaacttgt agcgctaacg
2821 caattagtgg aaaaagagtt acagttagga catatagaac cttcacttag ttgttggaac
2881 acacctgtct ttgtgatccg gaaggcttcc gggtcttatc gcttattgca tgacttgcgc
2941 gctgttaacg ccaagcttgt tccttttggg gccgtccaac agggggcgcc agttctctct
3001 gcgctcccgc gtggctggcc cctgatggtc ctagacctca aggactgctt cttttctatt
3061 cctcttgcgg aacaagatcg cgaagctttt gcatttacgc tcccctctgt gaataaccag
3121 gcccccgctc gaagattcca atggaaggtc ttgccccaag ggatgacctg ttctcccact
3181 atctgtcagt tgatagtggg tcaggtactt gagcccttgc ggctcaggca cccatctctg
3241 cgcatgttgc attatatgga tgatcttctg ctagccgcct cgagtcatga caagttggag
3301 gcggcagggg aggaggttat tagtacactg gaaagagccg ggttcaccat ttcgcctgat
3361 aaggtccaga gggagcccgg agtacaatat cttgggtaca agttaggcag tacgtatgta
3421 gcacccgtag gcctggtggc agaacccagg atagccacct tgtgggatgt tcaaaagctg
3481 gtggggtcac ttcagtggct tcgccctgca ttaggaatcc cgccacgact gatgggcccc
3541 ttttatgagc agttgcgggg gacagaccct aacgaggcga gggaatggaa tctagacatg
3601 aaaatggcct ggagagagat tgtacagctt agcaccactg ctgccttgga acgatgggac
3661 cctgccctgc ctctggaagg agcggtcgct agatgtgaac agggggcaat aggggtcctg
3721 ggacagggac tgtccacaca cccaaggcca tgcttgtggt tattctccac ccaacccacc
3781 aaggcgttta ctgcttggtt agaagtgctc acccttctga ttgctaagct acgtgcttcg
3841 gcagtgcgga cctttggcaa agaggtggat atcctcctgt tgcctgcatg ctttagggag
3901 gaccttccgc tcccggaagg gatcctgtta gcccttaagg ggtttgcagg aaaaatcagg
3961 agtagtgaca cgccatctat ttttgacatt gcgcgtccac tgcatgtttc tctgaaagtg
4021 agggttaccg accaccctgt accgggaccc actgtcttta ccgacgcctc ctcaagcacc
4081 cataaggggg tggtagtctg gagggagggc ccaaggtggg agataaaaga aatagctgat
4141 ttgggagcaa gtgtacaaca actggaagca cgcgctgtgg ccatggcact tctgctgtgg
4201 ccgacaacgc ccacgaatgt agtgactgac tccgcgtttg ttgcgaaaat gttactcaag
4261 atgggacagg agggagtccc gtctacagcg gcggctttta ttttagagga tgcgttaagc
4321 caaaggtcag ccatggccgc cgttctccac gtacggagtc attctgaagt gccagggttt
4381 ttcacggaag gtaatgacgt ggcagatagc caagccacct ttcaagcgta tcccttgaga
4441 gaagctaaag atcttcatac cgctctccat attggacccc gcgcgctatc taaggcgtgt
4501 aatatatcta tgcaacaggc tagggaggtt gttcagacct gcccgcattg taattcagcc
4561 cctgcgttgg aggccggggt aaaccctagg ggtttgggac ccctacagat atggcaaaca
4621 gactttacgc ttgagcctag aatggccccc cgttcctggc tcgctgttac tgtggatacc
4681 gcctcatcgg cgatagtcgt aactcagcat ggccgtgtca catcggttgc tgcacaacat
4741 cattgggcca cggctatcgc cgttttggga agaccaaagg ccataaaaac agataacggg
4801 tcctgcttca cgtctaaatc cacgcgagag tggctcgcga gatgggggat agcacacacc
4861 accgggattc cgggtaattc ccagggtcaa gctatggtag agcgggccaa ccggctcctg
4921 aaagataaga tccgtgtgct tgcggagggg gacggcttta tgaaaagaat ccccaccagc
4981 aaacaggggg aattactagc taaggcaatg tatgccctca atcactttga gcgtggtgaa
5041 aacacaaaaa caccgataca aaaacactgg agacctaccg ttcttacaga aggacccccg
5101 gttaaaatac gaatagagac aggggagtgg gaaaaaggat ggaacgtgct agtctgggga
5161 cgaggttatg ccgctgtgaa aaacagggac actgataagg tcatttgggt accctctcgg
5221 aaagttaaac cggacatcac ccaaaaggat gaggtgacta agaaagatga ggcgagccct
5281 ctctttgcag gcatttctga ccgggcaccc tgggaaggcg agcaggaagg actctaagaa
5341 gaagccgcca gcaacaagca agaaagaccc ggagaagaca cccttgctgc catcgagagg
5401 tcacttcttc tttcaaatga tacttgtgtg catggttatt attttcgttg tcccaggggt
5461 gggaggggtt catctgttgc aacaaccagg aaacgtgtgg gtcacctggg caaataagac
5521 gggccaaacg gatttttgcc ttagtctaca gtcagcgacc tcaccattcc gcacctgctt
5581 gataggcatt ccacagtatc ctctgaacac ctttaaggga tatgtcacta atgttactgc
5641 ttgcaataac gataccgata tagccagcca aacagcatgc ttgataaagg ctctaaatac
5701 aaccctccct tgggaccccc aggaattaga tattttaggg tcccagatga tcaagaacgg
5761 aacaaaacgt acgtgtgtta cctttggttc ggtgtgctat gaagggaaca atggcagtag
5821 agactgtcac aattttgatg ggaattttaa tgggactggt ggggcagaag cagaattgcg
5881 tgacttcata gcaaaatgga aaagtgatga ccctcttata aggccctatg tcaaccaatc
5941 atggacgatg gtaagtccaa taaacacaga gagtttttca ataagtagta gatattgtgg
6001 attcaccagt aacgagactc gttactatcc aaagaacgtt tctgattggt gtggttcaaa
6061 aaggggaaaa tggtcagcgg ggtacaggaa tgggacagaa tgttccagca acacgacgga
6121 ttgcggtggt aattgcacgg cggaatggaa ttattatgca tatgggttta cctttgggaa
6181 acagccagag atattgtgga ataatgggac tgctaaggca ctcccaccag gtattttctt
6241 gatttgtggg gacagggctt ggcaaggcat cccgcgtaat gccttgggag ggccctgtta
6301 tctaggacaa ttgactatgc tctctcctaa ctttaccacc tggatgacgt atgggccgaa
6361 cattacgggt caccgccgta gcaggcgctc ggtgagtcat ctctcgccta actgcagtga
6421 tgagatacag ctatggagtg tgacagcccg gatatttgct tctttctttg ctcctggtgt
6481 agcagcagca caggccttaa aggagatcga acgcttggca tgttggtcgg ttaagcaagc
6541 gaatttaaca tcattaatat tgaatgcgat gctggaggat acgaacagca tccggcacgc
6601 ggtgttgcag aatcgggcag ccatcgattt cttactcctg gcgcagggac acgggtgtca
6661 agacgtggaa gggatgtgtt gcttcaatct cagcgatcat agtgagtcca ttcacaaggc
6721 gctccaagcc atgaaggaac atacagagaa gatacgggtg gaagatgatc ccatagggga
6781 ttggtttacg cgcacatttg gtagtcttgg agggtggctc gcgaagggtg ttaagacgct
6841 actgttcgca ttgcttgtca tagtctgtct attagctatc attccatgta taatcaagtg
6901 ctttcaagat tgtctatcaa gaataatgta tcagtttatg gatgaacgca taagatatca
6961 tagaattagg gagcggctgt aggttccaaa cgcgaagtgg cggggggctg gtaggggtat
7021 agaacttgca aatcgggctg taacggggca aggcttgact gaggggactg tagcatgtat
7081 aggcgctgtg cggggcttcg gttgtacgcg gataggaatc ccctcaggac aattctgctt
7141 gaaatacgat ggcaccttcc ctgttgcctc tgtggattag gactggaggc agctcggatg
7201 atctgatggc caaatagagc aagctagata ggtaactgcg aaatacgctt ttgcataggg
7261 agggggaaat gtagtactct tatgtaacga tgaaacagca aaatgcctta taaggaagaa
7321 aaggcactgt gcacgtcgat tggtagaagt aaggtggtat gatcgtggca tgatcatgcc
7381 ttattaggaa ggcagcagac gggtcttaca tggattggac gaactcctta attccgcgtt
7441 gcagagatat tgtatttaag agcctagcct gatacaataa acgccatttt acctcccacc
7501 acattggtgt gcacctgggt tgatggccgg accgtcgatt ccctgacgat tgcgagcacc
7561 tgaatgaagt gaaaggcttc a
//
