LOCUS S74099 7226 bp RNA linear VRL 26-JUL-2016
DEFINITION Avian myeloblastosis virus p27/CA gene, complete cds; and
polyprotein II and v-myb product genes, partial cds.
ACCESSION S74099
VERSION S74099.1
KEYWORDS .
SOURCE Avian myeloblastosis virus
ORGANISM Avian myeloblastosis virus
Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes;
Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus.
REFERENCE 1 (bases 1 to 7226)
AUTHORS Baluda,M.A. and Reddy,E.P.
TITLE Anatomy of an integrated avian myeloblastosis provirus: structure
and function
JOURNAL Oncogene 9 (10), 2761-2774 (1994)
PUBMED 8084581
REMARK GenBank staff at the National Library of Medicine created this
entry [NCBI gibbsq 157120] from the original journal article.
FEATURES Location/Qualifiers
source 1..7226
/organism="Avian myeloblastosis virus"
/proviral
/mol_type="genomic RNA"
/db_xref="taxon:11866"
CDS 680..2785
/note="contains p1, p10, nuclear capsid protein p12,
matrix protein p19, p2, and capsid protein p27"
/codon_start=1
/product="polyprotein I"
/protein_id="AAB31928.1"
/translation="MEAVIKVISSACKTYCGKTSPSKKEIGAMLSLLQKEGLLMSPSD
LYSPGSWDPITAALSQRAMVLGKSGELKTWGLVLGALKAAREEQVTSEQAKFWLGLGG
GRVSPPGPECIEKPATERRTDKGEEVGETTAQRDAKMAPEETATPKTVGTSCYHCGTA
IGCSCATASAPPPPYVGSGLYPSLAGVGEQQGQEGDTPGGAEQPRGEPRHAGLAPKAA
LTDWARVREELASTGPPVVAMPVVIKTEGPAWTPLEPKWITRLADTVRTKGLRSPITM
AEVEALMSSPLLPHDVTNLMRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQ
GRGERTNLNRLKGLADGMVGNPQGQAALLRPGELVAITAAALQAFREVARLAEPAGPW
ADITQGPSEPFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPST
LTTPGEIIKYVLDRQKTAPLTDQGIAAAMSSAIQPLVMAVVNRERDGQTGSGGRARGL
CYTCGSPGHYQAQCPKKRKSGNSRERCQLCDGMGHNAKQCRKRDGNQGQRPGRGLSSG
PWPVSEPPAVSLAMTMEHKDRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISE
EDWPADWPVMEAANPQIHGIGGGIPMRKSRDMIEVGVINRDGSLERPLLLFPAVAMVR
GSILGRDCLQGLGLRLTNL"
CDS <2782..5463
/codon_start=1
/product="polyprotein II"
/protein_id="AAB31929.1"
/translation="IGRATVLTVALHLAIPLKWKPNHTPVWIDQWPLPEGKLVALTQL
VEKELQLGHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQGAPVLS
ALPRGWPLMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCS
PTICQLIVGQILEPLRLKHPSLRMLHYMDDLLLAASSHDGLEAAGEEVISTLERAGFT
ISPDKVQREPGVQYLGYKLGSTYVAPVGLVAEPRIATLWDVQKLVGSLQWLRPALGIP
PRLRGPFYEQLRGSDPNEAREWNLDMKMAWREIVRLSTTAALERWDPALPLEGAVARC
EQGAIGVLGQGLSTHPRPCLWLFSTQPTKAFTAWLEVLTLLITKLRASAVRTFGKEVD
ILLLPACFRDDLPLPEGILLALRGFAGKIRSSDTPSIFDIARPLHVSLKVRVTDHPVP
GPTVFTDASSSTHKGVVVWREGPRWEIKEIADLGASVQQLEARAVAMALLLWPTTPTN
VVTDSAFVAKMLLKMGQEGVPSTAAAFILEDALSQRSAMAAVLHVRSHSEVPGFFTEG
NDVADSQATFQAYPLREAKDLHTALHIGPRALSKACNISMQQAREVVQTCPHCNSAPA
LEAGVNPRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQH
HWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANR
LLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPIQKHWRPTVLT
EGPPVKIRIETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDIAQKDEVTK
KDEASPLFAGWRHIDKRIITLHSSFSKINLLVCFIFH"
mat_peptide 2803..4518
/product="reverse transcriptase alpha"
mat_peptide 4519..5376
/product="integrase"
CDS <5464..6612
/note="conceptual translation presented here differs from
translation in publication"
/codon_start=1
/product="v-myb product"
/protein_id="AAB31930.2"
/translation="NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRW
SDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLL
PGRTDNAVKNHWNSTMRRKVEQEGYPQESSKAGPPSATTGFQKSSHLMAFAHNPPAGP
LPGAGQAPLGSDYPYYHIAEPQNVPGQIPYPVALHINIINVPQPAAAAIQRHYTDEDP
EKEKRIKELELLLMSTENELKGQQALPTQNHTANYPGWHSTTVADNTRTSGDNAPVSC
LGEHHHCTPSPPVDHGCLPEESASPARCMIVHQSNILDNVKNLLEFAETLQLIDSFLN
TSSNHENLNLDNPALTSTPVCGHKMSVTTPFHKDQTFTEYRKMHGGAV"
ORIGIN
1 ttcttcaata gtttgtagtc ttaatcgtag gttaacatgt atattaccaa ataatttaat
61 cgcctgatgc accaaataag gtattatatg atcccattgg tggtgaagga gcgacctgag
121 ggcatatggg cgttaacaga actgtctgtc cttgcgtcat tcctcatcgg atcatgtacg
181 cggcagagta tgattggata acaggatggc accattcatc gtggcgcatg ctgattggtg
241 cactaaggag ttgtgtaacc cacgaatgta cttaagcttg tagttgctaa caataaagtg
301 ccattctacc tctcaccaca ttggtgtgca cctgggttga tggccggacc gtcgattccc
361 tgacgactgc gaacacctga atgaagctga aggcttcatt tggtgacccc gacgtgatcg
421 ttagggaata gtggtcggcc acaggcggcg tggcgatcct gtctccatcc gtctcgtcga
481 cccgggaggc gaacgatgac cctcttagag ggggctgcgg cttagggagg cagaagctga
541 gcaccgtcgg taggagctcc agggcccggg gcccagatac ccctgccgag aactcagaca
601 gtcgtcggaa gacggggagg gagcccgacg attgagtggt ccgttgttcg cgcgattccg
661 gtcgcgctgt ggatcaaaca tggaagccgt cataaaggtg atttcgtccg cgtgtaaaac
721 ctattgcggg aaaacctctc cttctaagaa ggaaataggg gccatgttgt ccctgttaca
781 aaaggaaggg ttgcttatgt ccccctcaga cttatactcc ccggggtcct gggatcctat
841 taccgcggcg ctctcccagc gagctatggt acttgggaaa tcgggagagt taaaaacctg
901 gggattggtt ttgggggcat tgaaggcagc tcgagaggaa caggttacat ctgagcaagc
961 aaagttttgg ttgggattag ggggagggag ggtctctccc ccaggtccgg agtgtatcga
1021 gaaaccagca acagagcggc gaaccgacaa gggggaggaa gtgggagaaa caactgcgca
1081 gcgagatgcg aagatggcgc cggaggaaac ggccacacct aagaccgttg gcacatcctg
1141 ctatcattgc ggaacagcta ttggctgtag ttgcgccaca gcctcggctc ctcctcctcc
1201 ttatgtgggg agtggtttgt atccttccct ggcgggggtg ggagagcagc agggccagga
1261 gggtgacaca cccggggggg cggaacagcc aaggggcgag ccaaggcacg cgggtctggc
1321 ccctaaggcg gccctgactg attgggcaag ggtcagggag gagcttgcga gtactggtcc
1381 gcccgtggtg gccatgcctg tagtgattaa gacagaggga cccgcttgga cccctctgga
1441 gccaaaatgg atcacaagac tggctgatac ggtcaggacc aagggcttac gatccccgat
1501 cactatggca gaagtggaag cgcttatgtc ctccccgctg ctgccgcatg acgttacgaa
1561 tctaatgaga gttattttag gacctgcccc atatgcctta tggatggacg cttggggagt
1621 ccaattacag acggttatag cggcagccac tcgcgacccc cgacacccag cgaacggtca
1681 agggcggggg gaacggacta acttgaatcg cttaaagggt ttagctgatg ggatggtggg
1741 caacccacag ggtcaggccg cattattaag accgggggaa ttggttgcta ttacggcggc
1801 ggctctccag gcgtttagag aggttgcccg gctggcggaa cctgcaggtc catgggcgga
1861 tatcacgcag ggaccatctg agccctttgt tgactttgcc aatcggctta taaaggcggt
1921 tgaggggtca gatctcccgc cttccgcgcg ggctccggtg atcattgact gctttaggca
1981 gaagtcacag ccagatatcc agcagcttat acgggcagca ccctccacgc tgaccacccc
2041 aggagagata atcaaatatg tgctagacag gcagaagact gcccctctta cggatcaagg
2101 catagccgcg gccatgtcgt ctgctatcca gcccttagtt atggcagtag tcaatagaga
2161 gagggatgga caaactgggt cgggtggtcg tgcccgaggg ctctgctaca cttgtggatc
2221 cccgggacat tatcaggcgc agtgcccgaa aaaacggaag tcaggaaaca gccgtgagcg
2281 atgtcagttg tgtgacggga tgggacacaa cgctaaacag tgtaggaagc gggatggcaa
2341 ccagggccaa cgcccaggaa gaggcctctc ttcggggccg tggcccgtct ctgagccgcc
2401 tgccgtctcg ttagcgatga caatggagca taaagatcgc cccttggtta gggtcattct
2461 gactaacact gggagtcatc cggtcaaaca gcgttcggtg tatatcaccg cgctgttgga
2521 ctctggagcg gacatcacta ttatttcaga ggaggactgg cccgccgatt ggccagtgat
2581 ggaggctgcg aacccacaga tccatgggat aggaggggga attcccatgc gaaaatcccg
2641 cgatatgata gaagtggggg ttattaaccg agacggatcc ttggagcgac ccctgctcct
2701 cttccccgca gtggctatgg ttagagggag tatcctagga agagattgtc tgcagggcct
2761 agggctccgc ttgacaaatt tatagggagg gccactgttc ttactgttgc gctacatctg
2821 gctattccgc tcaaatggaa gccaaaccac acgcctgtgt ggattgacca gtggcccctt
2881 cctgaaggta aacttgtagc gctaacgcaa ttagtggaaa aagaattaca gttaggacat
2941 atagaacctt cacttagttg ctggaacaca cctgtctttg tgatccggaa ggcttccggg
3001 tcttaccgct tattgcatga cttgcgcgct gttaacgcta agcttgttcc ttttggggcc
3061 gtccaacagg gggcgccagt tctctccgcg ctcccgcgtg gttggcccct gatggttcta
3121 gacctcaagg attgcttctt ttctattcct cttgcggaac aagatcgcga agcttttgca
3181 tttacgctcc cctccgtgaa taaccaggcc cccgctcgaa ggttccaatg gaaggtcttg
3241 ccccaaggga tgacctgttc tcccactatc tgtcagttga tagtgggtca aatacttgag
3301 cccttgcgac tcaagcaccc atctctgcgc atgttgcatt atatggatga tcttttgcta
3361 gccgcctcaa gtcatgatgg gttggaagcg gcaggggagg aggttatcag tacattggaa
3421 agagccgggt tcaccatttc gcctgataag gtccagaggg agcccggagt acaatatctt
3481 gggtacaagt taggtagtac gtatgtagca cccgtaggcc tggtagcaga acccaggata
3541 gccaccttgt gggatgttca gaagctggtg gggtcacttc agtggcttcg cccagcgtta
3601 ggaatcccgc cacgactgag gggccccttt tatgagcagt tacgagggtc agatcctaac
3661 gaggcgaggg aatggaatct agacatgaaa atggcctgga gagagatcgt acggctcagc
3721 accactgctg ccttggaacg atgggaccct gccctgcctc tggaaggagc ggtcgctaga
3781 tgtgaacagg gggcaatagg ggtcctggga cagggactgt ccacacaccc aaggccatgt
3841 ttgtggttat tctccaccca acccaccaag gcgtttactg cttggttaga agtgctcacc
3901 cttttgatta ctaagttacg tgcttcggca gtgcgaacct ttggcaagga ggttgatatc
3961 ctcctgttgc ctgcatgctt tcgggacgac cttccgctcc cagaggggat cctgttagcc
4021 cttagggggt ttgcaggaaa aatcaggagt agtgacacgc catctatttt tgacattgcg
4081 cgtccactgc atgtttctct gaaagtgagg gttaccgacc accctgtgcc gggacccact
4141 gtctttactg acgcctcctc aagcacccat aagggggtgg tagtctggag ggagggccca
4201 aggtgggaga taaaagaaat agctgatttg ggggcaagtg tacaacaact ggaagcacgg
4261 gctgtggcca tggcacttct gctgtggccg acaacgccca ctaatgtagt gactgactct
4321 gcgtttgttg cgaaaatgtt actcaagatg ggacaggagg gagtcccgtc tacagcggcg
4381 gctttcattt tagaggatgc gttaagccaa aggtcagcca tggccgccgt tctccacgtg
4441 cggagtcatt ctgaagtgcc agggtttttc acagaaggaa atgacgtggc agatagccaa
4501 gccacctttc aagcgtatcc cttgagagag gctaaagatc tccataccgc tctccatatt
4561 ggaccccgcg cgctatccaa agcgtgtaat atatctatgc agcaggctag ggaggttgtt
4621 cagacctgcc cgcattgtaa ttcagcccct gcgttggagg ccggggtaaa ccctaggggt
4681 ttgggaccct tacagatatg gcagacagac tttacgcttg agcctagaat ggccccccgt
4741 tcctggctcg ctgttactgt ggataccgcc tcatcggcga tagtcgtaac tcagcatggc
4801 cgtgtcacat cggttgctgc acaacatcat tgggccacgg ctatcgccgt tttgggaaga
4861 ccaaaggcca taaaaacaga taacgggtcc tgcttcacgt ctaaatccac gcgagagtgg
4921 ctcgcgagat gggggatagc acacaccacc gggattccgg gtaattccca gggtcaagct
4981 atggtagagc gggccaaccg gctcctgaaa gataagatcc gtgtgcttgc ggagggggat
5041 ggctttatga aaagaatccc caccagcaaa cagggggaac tattagccaa ggcaatgtat
5101 gccctcaatc actttgagcg tggtgaaaac acaaaaacac cgatacaaaa acactggaga
5161 cctaccgttc ttacagaagg acccccggtt aagatacgaa tagagacagg ggagtgggaa
5221 aaaggatgga acgtgctggt ctggggacga ggttatgccg ctgtgaaaaa cagggacact
5281 gataaggtta tttgggtacc ctctcgaaaa gttaaaccgg acatcgccca aaaggatgag
5341 gtgactaaga aagatgaggc gagccctctt tttgcaggct ggaggcacat agataagaga
5401 attatcactc tacattcatc tttctcaaag attaatctac ttgtgtgttt tatatttcat
5461 tagaatcgga cagatgttca gtgccagcac cggtggcaga aagtattaaa cccagaactt
5521 aacaaaggtc catggactaa agaggaggat caaagggtaa tagaacacgt gcagaaatac
5581 ggtccaaagc gctggtcgga cattgctaag catttgaagg gaaggattgg aaaacagtgc
5641 agggagaggt ggcacaacca tctgaatcca gaagtgaaga aaacctcctg gacagaagag
5701 gaagatagaa ttatttacca ggcacacaag agactgggaa acagatgggc agaaattgca
5761 aagttgctgc ctggacggac tgataacgct gtcaagaacc actggaattc caccatgcgc
5821 cggaaggtcg agcaggaggg ttacccgcag gagtcctcca aagccggccc gccctcggca
5881 accaccggct tccagaagag cagccatctg atggcctttg cccacaaccc acctgcaggc
5941 ccgctcccgg gggccggcca ggcccctctg ggcagtgact acccctacta ccacattgct
6001 gagccacaaa atgtccctgg tcagatccca tatccagtag cactgcatat aaatattatc
6061 aatgttcctc agccagctgc tgcagctatt cagagacact atactgatga agaccctgag
6121 aaagaaaaac gaataaagga attagagttg ctacttatgt cgactgagaa tgaactgaaa
6181 gggcagcagg cattaccaac acagaaccac acagcaaact accccggctg gcacagcacc
6241 acggttgctg acaataccag gaccagtggt gacaatgcgc ctgtttcctg tttgggggaa
6301 catcaccact gtactccatc tccaccagtg gatcatggtt gcttacctga ggaaagtgcg
6361 tcccccgcac ggtgcatgat tgttcaccag agcaacatcc tggataatgt taagaatctc
6421 ttagaatttg cagaaacact ccagttaata gactccttct taaacacatc gtccaatcac
6481 gagaatctga acctggacaa ccctgcacta acctccacgc cagtgtgtgg ccacaagatg
6541 tctgttacca ccccattcca caaggaccag actttcactg aatacaggaa gatgcacggc
6601 ggagcagtct agagctcaat tataataatc ttgcgaatcg ggctgtaacg gggcaaggct
6661 tgaccgaggg gactataaca tgtataggcg aaaagcgggg tctcggttgt aacgcgctta
6721 ggaagtcccc tcgaggtatg gcagatatgc ttttgcatag ggagggggaa atgtagtctt
6781 aatcgtaggt taacatgtat attaccaaat aagggaatcg cctgatgcac caaataaggt
6841 attatatgat cccattggtg gtgaaggagc gacctgaggg catatgggcg ttaacagaac
6901 tgtctgtcct tgcgtcattc ctcatcggat catgtacgcg gcagagtatg attggataac
6961 aggatggcac cattcatcgt ggcgcatgct gattggtgca ctaaggagtt gtgtaaccca
7021 cgaatgtact taagcttgta gttgctaaca ataaagtgcc attctacctc tcaccacatt
7081 ggtgtgcacc tgggtgatcg ccggaccgtc gattccctga cgactgcgaa cacctgaatg
7141 aagctgaagg cttcaatagt tgcatcagtg caggttagaa cagtgaagag acttagattc
7201 tgaattgcta cgtagggctg gagatc
//
