KEGG   Geotalea daltonii: Geob_3391
Entry
Geob_3391         CDS       T00846                                 
Symbol
rnr
Name
(GenBank) exoribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
geo  Geotalea daltonii
Pathway
geo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:geo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Geob_3391 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:geo03019]
    Geob_3391 (rnr)
   03016 Transfer RNA biogenesis [BR:geo03016]
    Geob_3391 (rnr)
Enzymes [BR:geo01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Geob_3391 (rnr)
Messenger RNA biogenesis [BR:geo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Geob_3391 (rnr)
Transfer RNA biogenesis [BR:geo03016]
 Prokaryotic type
  tRNA degradation factors
   Geob_3391 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 OB_Dis3 CSD Rho_RNA_bind
Other DBs
NCBI-ProteinID: ACM21734
UniProt: B9M5H5
Position
complement(3749526..3751802)
AA seq 758 aa
MKIKKEAVVKLLKNNAGVPMEFREMMQAFGISKAERPKFKAIIDGFVDEGALLRLRGRLF
ILPASGTGLTGKLSVHRDGYGFVMPEEGEDVFIPARYLRENMHGDRVEVQIVAKKRDGKQ
EGRIVKTLERGFSKLVGRFEKGAKVSRVIPDEVRIGKDIIIPAKAAGKATNGQVVVAEIT
SYAGAGRSMEGRIIEVLGWPDEPEVEVQTIIRKHELPDVFPPSVLKAARAVPETIQDSEL
EGRTDLRGQLTVTIDGETAKDFDDAVSVKKEGKGAIRLWVSIADVSHYVKPGSPLDKEAY
LRGTSVYFPDRCIPMLPEELSNGICSLNPQVDRLTMTAEMLFDGSGTILEAAFYPSVIRS
VARLTYTKVKKIVVDNDPELVKEYAELVPELKTMEELALRLMAKRRKRGSIDFDLPEPEI
LLDLTGGITAIVRAERNLAHKIIEEFMLAANEAVASHIEERELPFLYRIHETPEFAKLQD
FKEFIFNFGYELRLQEEKVSPGEFQRILDQAQGKPEERMINEVLLRCMKQARYSAENVGH
FGLAAASYTHFTSPIRRYPDLVVHRILKKQLAKKIGEKDRENLASTLPETGLHTSKRERV
AMEAEREIVELKKMQYMQDKVGEELDGIITGVASFGFFVELVEIFVEGMVHISTLKQDFY
EYVEKQHALIGERSRTIYRIGDPVRIRVAAVSLEKKQVEFVLARHDERVAPVAEVYGGDE
FPKVPVRGKWPKIERKEDRRSGEKDRRDSGSKKGRRRK
NT seq 2277 nt   +upstreamnt  +downstreamnt
atgaagataaaaaaagaagccgttgtaaaactgctgaagaataatgccggagttcccatg
gaattcagggaaatgatgcaggctttcggcatcagcaaggctgagcgcccaaagttcaaa
gcgatcatcgacggtttcgtcgacgaaggggcgcttctgcgcttgagggggcgacttttc
attctgccggcctccggcaccggcctgaccggcaagttgagcgtccaccgtgacggctac
ggtttcgtcatgccggaagaaggggaggatgtattcattcccgcccgttatctcagggaa
aacatgcacggcgaccgggtcgaggtgcagatcgtggccaaaaagcgggacggtaagcag
gaagggcgaatcgtcaaaacgctggagcgtggtttttcgaaactcgtcggccgctttgaa
aagggagctaaggtctcccgcgtcatacccgatgaggtccgtatcggcaaggacatcata
attccggcgaaagccgcaggcaaggcgacaaatggccaggtggtcgtcgccgagataacc
tcctacgccggtgccggccgttccatggaaggacggatcatcgaggttctcggctggccc
gatgagccggaagtggaagtgcagaccatcatcagaaagcacgaacttcccgacgttttt
ccgccatcggtcctgaaggctgcccgggcggttcctgagactatccaggattcagaactc
gaggggcggaccgacctgcgtggccagctgacggtaaccatcgacggggagacggccaag
gatttcgacgatgcggtttccgtgaaaaaagagggaaagggcgccattcgcctctgggtc
tccatcgccgacgtttcccattatgtgaagcccggctctcccctggacaaggaggcatac
ctgcggggcacttcggtctatttccccgaccgctgcattcccatgcttccggaagagctt
tccaacggcatttgttccttgaatccccaggtggaccgcctgacgatgacggcggagatg
ctcttcgatggaagcggcaccatactggaagcggccttttaccccagcgtcatcaggagt
gtggccaggctcacctataccaaggtgaaaaagatcgttgtcgacaacgacccagagctg
gtcaaggaatatgcggaactggtgcccgagcttaaaaccatggaggaactggccctgcgc
ctgatggccaagcgccggaaaagggggagcatcgatttcgacctgcccgaaccggagatc
ctgctggatctgaccggcggcatcacggccattgtccgggccgagcgcaacctggcccac
aagatcatcgaagaattcatgcttgccgccaacgaggcggttgcctcccatattgaagag
cgggagcttcccttcctttaccggatccatgagacacccgagtttgccaagctgcaggat
ttcaaggagttcatcttcaatttcggctatgagctgcgtctgcaggaagaaaaggtaagc
cctggagagttccagcggatacttgaccaggcccaagggaaaccggaagagcgaatgata
aacgaggtgctgttgcgctgcatgaagcaggcacgctactctgcggaaaatgtcggccat
ttcggcctggctgccgcttcctatacccattttacctctcccatacgccgctatccggac
ctggtggtgcaccggatactgaaaaaacagctggccaaaaagatcggtgaaaaagacagg
gaaaacctggcctcaaccctgccggagaccggcctgcacaccagcaagcgggagcgagtg
gccatggaggcggaacgggaaatagtcgagctgaagaagatgcagtacatgcaggataag
gtgggggaagagttagacggcatcattaccggggttgcttccttcggcttttttgtggaa
ctggtggaaatcttcgtggaggggatggtgcatatttcgaccctgaagcaggacttctac
gaatatgtggagaaacagcatgccctgatcggcgaacggagccgtaccatctaccggatc
ggcgatcctgtgcgcatcagggtggccgccgtcagcctggaaaagaaacaggtggaattc
gtccttgcccgtcacgatgaaagggttgcacctgtggctgaagtgtatggcggggatgaa
tttcccaaagttccggtgcggggcaaatggccaaaaatcgaaaggaaagaggaccgccgc
tccggtgaaaaggatcgaagggatagtggttccaagaagggcagaaggcgcaagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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