KEGG   Georgenia wutianyii: FE251_04260
Entry
FE251_04260       CDS       T06026                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
gez  Georgenia wutianyii
Pathway
gez03030  DNA replication
gez03410  Base excision repair
gez03420  Nucleotide excision repair
gez03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:gez00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    FE251_04260 (ligA)
   03410 Base excision repair
    FE251_04260 (ligA)
   03420 Nucleotide excision repair
    FE251_04260 (ligA)
   03430 Mismatch repair
    FE251_04260 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gez03032]
    FE251_04260 (ligA)
   03400 DNA repair and recombination proteins [BR:gez03400]
    FE251_04260 (ligA)
Enzymes [BR:gez01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     FE251_04260 (ligA)
DNA replication proteins [BR:gez03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     FE251_04260 (ligA)
DNA repair and recombination proteins [BR:gez03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     FE251_04260 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     FE251_04260 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     FE251_04260 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      FE251_04260 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 DNA_ligase_ZBD BRCT HHH_5 HHH PTCB-BRCT BRCT_2 zf-TFIIB
Other DBs
NCBI-ProteinID: QDB78678
UniProt: A0A5B8AR59
Position
complement(956450..958819)
AA seq 789 aa
MAQTEPVPASLDEARDEARALTEKIDGAREAYYGKDTSLVDDATYDGWMHRLEEIERAHP
LLRSQDSPTQVVGAAGTSDLPTIEHAEPMLSLDNVFSLEELAEWCAKTQAAAGRTVAWLT
ELKIDGLAVSLRYEHGVLTSAATRGDGRVGEDVTSNVKRLGIVPDRLAGEGHPPLVEVRG
ELFIPVAEFERLNELQAELRERAVAEARTRWQERSTGGTFDESRAEASAARRFPAFANPR
NAASGGLRQRLDKKTGLEHEAGTARLRALALFVHGFGAWGDPPVHAQSEVYELLAGWGLP
TNPRTKVLGSVEEVGAYVEQYGRERHEVEYEIDGVVVKVDEFALHAELGRTSRAPRWAIA
YKYPPEEVHTRLLDIKVGVGRTGRATPYAVMEPVHVAGSTVRQATLHNQEVVRAKGVLIG
DTVVLRKAGDVIPEVLGPVVDLRDGSEREFVMPQDCPECGTPLRPMKEGDIDLRCPNARS
CPAQVRGRVEHIGSRGALDVDALGEVTAAALTQPTSPAQPPLTTEAGLFELELDELVPIE
VVVRDNETGEPRVDEHGEPVRRRPFQRVELTYPPGYEDATPAERRAAGVRKNFRRVHPSK
QALVLLEELERAKTKDLWRQLVALNIRHVGPVAARALAAHFGSLDAIRAAEQAELAAVEG
VGGIIADAVRDWFEVDWHREIVERWTAAGVRFAIPGHPGPGAAAETGGVLEGLTVVITGS
IEGYTREGAKEAVIAAGGKAATSVSRKTDYVAAGPGAGSKLAKAEELGLPVLDAEQFRTL
VEQGPDALG
NT seq 2370 nt   +upstreamnt  +downstreamnt
gtggcacagaccgaaccggtccccgcgagcctcgacgaggcgagggacgaggcccgcgcg
ctcaccgagaagatcgacggcgcccgcgaggcgtactacggcaaggacacctcgctcgtc
gacgacgcgacgtacgacgggtggatgcaccgcctggaggagatcgagcgcgcgcacccc
ctgctgcgcagccaggactcccccacccaggtggtgggtgccgccgggaccagcgacctg
ccgaccatcgagcacgccgagccgatgctcagcctcgacaacgtcttctccctggaggag
ctcgccgagtggtgcgccaagacccaggcggcggccggccgcacggtcgcctggctcacc
gagctgaagatcgacggactggctgtgtcgctgcgctacgagcacggcgtcctcacctcc
gccgcgacgcgcggggacggccgggtcggtgaggacgtcacgagcaacgtcaagcgcctg
ggcatcgtgcccgaccgcctcgcgggcgaggggcaccctccgctcgtcgaggtccggggc
gagctgttcatccccgtcgcggagttcgagcggctcaacgagctgcaggccgagctccgt
gagcgcgccgtcgcggaggcccgcacccggtggcaggagcgctcgaccgggggcaccttc
gacgagtcccgcgccgaggcgagcgccgcccgccgcttccccgccttcgccaacccgcgc
aacgccgccagcggcggcctgcggcagcggctcgacaagaagaccgggctcgagcacgag
gccgggaccgcccggctacgcgccctggcgctgttcgtccacggcttcggcgcctggggc
gacccgccggtccacgcgcagagcgaggtgtacgagctcctcgccggctggggcctgccg
accaacccccgcaccaaggtcctcggcagcgtcgaggaggtgggcgcctacgtcgagcag
tacggccgcgagcgccacgaggtcgagtacgagatcgacggcgtcgtggtcaaggtcgac
gagttcgccctgcacgccgagctcggccgcacgagccgagccccgcgctgggccatcgcc
tacaagtacccgcccgaggaggtccacacccggctgctcgacatcaaggtcggcgtcggg
cgcaccgggcgggccaccccctacgccgtcatggagccggtgcacgtcgcggggagcacg
gtgcgccaggcgacgctgcacaaccaggaggtcgtgcgggccaagggcgtgctcatcggg
gacacggtcgtcctgcgcaaggccggtgacgtcatccccgaggtgctcgggccggtcgtc
gacctccgcgacggcagcgagcgcgagttcgtcatgccgcaggactgccccgagtgcggc
acgccgttgcggccgatgaaggagggggacatcgacctgcggtgccccaacgcccgctcc
tgcccggcgcaggtgcgcggacgggtcgagcacatcggctcccgcggcgccctggacgtc
gacgcgctcggcgaggtcaccgccgccgccctcacccagccgacgagcccggcgcagccg
ccgctcaccaccgaggccggcctcttcgagctcgagctcgacgagctcgtgcccatcgag
gtggtcgtgcgcgacaacgagaccggggagccgcgggtggacgagcacggcgagcccgtg
cgccgccgcccgttccagcgggtggagctcacctacccgccgggctacgaggacgcgaca
ccggccgagcgccgcgcggcaggggtgcgcaagaacttccgccgcgtccacccctccaag
caggcgctcgtcctcctcgaggagctggagcgcgccaagaccaaggacctgtggcgccag
ctcgtcgccctcaacatccggcacgtcggacccgtcgccgcgcgggcgctcgccgcgcac
ttcggctccctcgacgcgatccgcgcggcggagcaggccgagctggccgccgtcgagggc
gtcggcgggatcatcgccgacgccgtgcgcgactggttcgaggtcgactggcaccgcgag
atcgtcgagcggtggacggccgccggcgtccgcttcgcgatccccggccaccccggtccc
ggggccgccgcggagaccgggggcgtgctcgaagggctcaccgtcgtcatcaccggctcg
atcgagggctacacccgcgagggtgccaaggaggcggtcatcgccgcgggcggcaaggcc
gcgacgagcgtgagcaggaagaccgactacgtggccgccggccccggtgccgggtccaag
ctcgccaaggccgaggagctcgggctgccggtcctggacgccgagcagttccgcacgctc
gtcgagcaggggcccgacgccctgggctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (29)   

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