KEGG   Geosporobacter ferrireducens: Gferi_09545
Entry
Gferi_09545       CDS       T04493                                 
Name
(GenBank) ATP-dependent DNA helicase PcrA
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
gfe  Geosporobacter ferrireducens
Pathway
gfe03420  Nucleotide excision repair
gfe03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:gfe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Gferi_09545
   03430 Mismatch repair
    Gferi_09545
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gfe03400]
    Gferi_09545
Enzymes [BR:gfe01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Gferi_09545
DNA repair and recombination proteins [BR:gfe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Gferi_09545
   MMR (mismatch excision repair)
    Other MMR factors
     Gferi_09545
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 PcrA_UvrD_tudor Intein_splicing UvrD_C_2 AAA_30 AAA_11 ResIII
Other DBs
NCBI-ProteinID: AOT69800
UniProt: A0A1D8GFY0
Position
complement(1968730..1971999)
AA seq 1089 aa
MNLDHLNDKQREAVLKTEGPLLILAGAGSGKTRVLTHRIAYLIEELGVYPGNILAITFTN
KAAKEMKERVEALLGQQTEIWVSTFHSACVRILRRDIEKIGYTRDFVIYDAADQQNILKD
CLKELNVNDELFPVAMVQNKISDAKDRILTPHGLLKEAAGDFQLSKIAEIYELYQKKLKK
NNALDFDDLIFKTVELFRNEPKVLSFYQHKFQYIMVDEYQDTNQIQYTLVHMLANMHKNL
CVVGDDDQCLIEGMPVSTPTGEVPLEELDANSEIICASGQSEILTGTVEKKHCKAYQGVI
VRIKTKSGKEIKGTPNHIGFARLNPQVGVYYVYLMYKKGYGYRIGQTQGVRSRKGEIANG
MAVRLNQEHADKMWILKTCFHKEEAAFYEQLYSVKYGIPTTVFHDKGRNMAITQNYIDQI
FKEIDTEKAAVRLMEDLIIFEEYPHHLPNAVIRGKTARRVINVTAFGGRKAGVESGWHSH
RISLNTTGDELKERFRPEFPVRDGNRNTWRVETERVEYDEAVHYARKLEQIEEAFDIVKK
ARLTENKSYYYMPLAHMKPTMSIPVFDNGKIVEDTIAEVEFIDYNGMVYDLSIPHLRQYV
CGGVVVHNSIYSWRGADIRNILNFEDDFSNAAVIKLEQNYRSTQNILDAANCVIKNNRGR
KSKVLWTSNRVGDRIRYYKAMNEHEEGQFIVSQIQEMYESEGRNYGEFAILYRTNAQSRV
LEEMLMRAGVPYRIFGGLKFYARKEIKDIIAYLRLIQNSVDDLSVRRVINVPKRGIGDKT
IEKLEQHAARTGESLFSAMLEAEELGDFSRRVLAGFNSFASLIMKFSEVKNEMGVSELIS
KVLEESGYIEELQKENTMEANSRIENLQEFLSVALEFEKSTEENTLEEFLGTISLVSDID
QMEDQENAVVLMTLHSAKGLEFPIVFLAGMEEGIFPISRAMFSDHDLEEERRLCYVGITR
AREILFLTHALVRTLYGRTNYNSISRFINEIAEDYIDMDKKEEAKKQERILAPGAGIYRG
VSMEAKMKPVEGTDSNEIKPGSKVRHEKFGLGTVISVKGSGEKAELTIAFDNAGIKKLVL
GFAPIKLLG
NT seq 3270 nt   +upstreamnt  +downstreamnt
atgaatttagatcatttaaatgataaacagcgggaagcagtgctgaaaacagaaggtccg
ttactgattctagcaggtgcaggatcggggaagacgagagttttgacccaccgtattgct
tatttaatagaagagttgggagtatatccgggaaatatactggccattacctttaccaat
aaggcagctaaagaaatgaaggaacgtgttgaggcactcttaggacagcagacagagatt
tgggtcagtacctttcactccgcctgtgtgagaatactgcgaagagatattgaaaaaata
ggatatacgagagactttgttatttacgatgcagcagaccagcaaaatatcttaaaggat
tgcctcaaagaattaaatgtgaatgatgagttatttcctgtggcaatggtgcaaaataag
atcagtgatgccaaggaccgcatcctgacgccacatgggttactcaaggaagcagcaggg
gattttcaattaagtaaaatcgcagagatttatgagctgtatcagaagaagctcaagaaa
aacaatgcattagattttgatgatctgatttttaagacggtagaactgtttcgtaatgaa
cctaaggtgctcagcttctatcagcacaaattccaatatatcatggtagatgagtatcag
gataccaaccagattcagtatactttagtacatatgctggcaaatatgcataagaacttg
tgtgtggtaggggatgatgaccagtgtttgatcgaaggtatgccagtaagcacaccaaca
ggagaagttcccttagaggagcttgatgcaaattctgagattatctgtgcttcaggacaa
agtgaaatcctaactggcactgttgaaaagaaacactgcaaggcctatcaaggtgttatt
gtcaggatcaagacaaaaagcggaaaagaaatcaaaggaacacctaatcacattggcttc
gcccgtttaaatccacaggtaggcgtttattatgtgtatttaatgtataaaaaaggatat
ggctatcgaattggacaaacgcagggagtaagaagcagaaaaggcgagatagctaatggt
atggcagtaagattaaaccaggagcatgcagacaaaatgtggattttgaagacatgcttt
cataaagaagaagcagctttttatgaacaactatattctgtgaagtatggcatacctacc
actgtattccatgataaaggtagaaatatggcgatcacacagaactatattgatcagatt
ttcaaggagattgatacggaaaaagcagctgtccgattaatggaggatttgattatattt
gaagaatatccgcatcatttacccaatgcggttatcagagggaaaactgcaagaagagtc
atcaatgtgactgcttttggcggaagaaaagctggtgttgaaagcggatggcatagtcac
agaatcagtttgaatacaacaggagatgaattgaaggaaagatttagaccagaattccca
gtaagagatggaaatagaaatacgtggcgcgtagagactgaacgagtagaatatgatgaa
gcagttcattacgcaaggaaactcgaacaaatagaagaagcattcgatattgtgaaaaaa
gcaaggttaacggagaataaaagttactactatatgccattggcacatatgaaacctact
atgagtattcctgtatttgataatgggaaaatagtagaagatactatcgcagaggttgaa
tttattgattataatggcatggtctatgatctatctataccacatcttagacaatatgtt
tgtggtggagttgttgtccataattcaatttacagttggaggggggccgatatccggaat
atcctgaatttcgaggatgatttctccaatgctgcagtgattaagctggagcaaaattac
cggtccacgcagaatatattagatgctgcaaactgtgtcattaaaaataaccggggcaga
aaaagtaaagtactgtggacatctaatcgtgtaggagaccgcatacgttactacaaggca
atgaatgaacatgaagagggtcaatttattgtaagtcagattcaagagatgtatgagtcg
gaagggcgtaattacggagaatttgccatattgtacaggaccaacgcccaatcccgggta
ctggaagaaatgctgatgcgggcaggggttccctacagaatattcggtggtttaaagttc
tacgcacgaaaagaaatcaaggatattattgcttatctgcgattgattcagaactctgta
gatgatctgagtgtaagacgggttatcaacgtgccaaagcgggggatcggagataagact
atagagaagctggagcagcatgcagcgcgaacgggcgaaagcctctttagtgcgatgctg
gaagctgaagagctgggagatttttcgagacgggtccttgccggatttaacagctttgct
tcattaatcatgaagtttagtgaagtaaagaatgaaatgggtgtatcggagctcatatcc
aaggttttagaggaatcaggatatattgaagaactgcagaaagaaaataccatggaagcc
aattcccggatagaaaaccttcaggaatttctgtctgtggcgttggagtttgaaaaatcc
acagaagaaaataccttagaagagtttttagggaccatttccttagtttcggatattgat
caaatggaggatcaggaaaatgctgtggtattgatgacgctccatagtgctaagggactg
gaatttcccattgtatttttagcgggaatggaggaaggtatttttcctatctctagagcg
atgttcagtgatcatgatttagaggaagagagacgcttatgctatgtggggattacccgg
gcaagggaaatactgtttctaacccatgcattggtacgtacactctatggtagaacgaac
tataacagcatatccaggtttattaatgagatcgctgaagactatatcgatatggataaa
aaggaagaagcgaagaaacaagagcggatattggctcctggtgcaggcatctacagagga
gtcagtatggaagcaaaaatgaagcctgtggaaggtacggacagcaatgagattaagcct
ggaagcaaggttcgccatgagaaattcggtctagggacagtgatttctgtaaagggcagc
ggagaaaaggcagagctcaccattgcctttgacaatgcagggattaaaaagctggtgttg
ggatttgcaccgattaaattattagggtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   RefGene (33)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (53)   

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