KEGG   Christiangramia flava: GRFL_1384
Entry
GRFL_1384         CDS       T04640                                 
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
gfl  Christiangramia flava
Pathway
gfl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gfl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GRFL_1384
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gfl03019]
    GRFL_1384
   03016 Transfer RNA biogenesis [BR:gfl03016]
    GRFL_1384
Enzymes [BR:gfl01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     GRFL_1384
Messenger RNA biogenesis [BR:gfl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     GRFL_1384
Transfer RNA biogenesis [BR:gfl03016]
 Prokaryotic type
  tRNA degradation factors
   GRFL_1384
SSDB
Motif
Pfam: RNB CSD2 OB_RNB OB_Dis3 S1 RNase_II_C_S1
Other DBs
NCBI-ProteinID: APU68108
UniProt: A0A1L7I3B2
Position
complement(1601414..1603609)
AA seq 731 aa
MKKKKKTRNKTQGNLSKTILDILRKNSGQAYNYKQVAAAMGVNDASSRNQIIKKLAQLAA
KKQITQIDRGKYVIEDSNDYYTGVLDLTTKGYGYVMVPELADDIFIANKDLNAAFNGDTV
EVYVFNRRRKKRSEGEITKILKRKRTEFVGTLQKKKDFGFVVVDEASMYTDFFISGNKMG
DAQDGDKVVVEFDEWPERADSPFGRITRVLGTPGEHQTEIHSILAQYGLPHEFPEKVEEF
ANSLDTSINQEEIARRRDMRDILTFTIDPKDAKDFDDALSFRELENGNYEIGIHIADVSH
YVKPNTILDEEAYDRATSVYLVDRVVPMLPEILSNNACSLRPEEEKFTFSAVFEIDDQAT
VKKEWFGRTVTYSDERFAYEEAQHIIETNSGTIPEEISIRNHPYTVKGPIVEAVVTLNRL
AKKMRSRRMRGGAISFDKVEVKFNLDENNDPTGVFFKVAKDANKLIEEFMLLANRKVAEF
IGKQKPKKTFVYRCHDEPDEEKLQTLQNIVGRFGHQLNLKDRKTTTSSLNKLLEDVQGRR
EQNMVDTLAIRSMSKAYYGTENIGHYGLAFDYYTHFTSPIRRYPDVMVHRLLQHYLDKNE
SASEEEYENKCHHSSEMENLASNAERDSIKYMQVKFMQDHENEDFLGVISGVTEWGIFVE
IVENKCEGMIRLRDLNDDHYEFDPKEFAVTGRKTGKTFTLGDEVYVRVKNADLIKRHLDF
SMVGSREEVED
NT seq 2196 nt   +upstreamnt  +downstreamnt
atgaagaaaaaaaagaagactagaaataagacgcagggaaatctttccaaaacgatatta
gacatacttagaaaaaattccggtcaggcgtataattacaaacaagtggccgcggccatg
ggcgtgaacgatgccagcagccgaaaccagattatcaagaaactggctcaattagcggct
aaaaaacaaattacacagatagatcgcggtaagtacgtgatcgaagacagcaacgattat
tataccggggttctggatctaaccactaaaggttatggttatgtgatggttccggaactg
gctgatgatatatttattgctaataaagacctgaatgccgcatttaatggtgataccgtg
gaggtatatgttttcaatcgtagacgtaaaaagcgatcagaaggagaaattactaaaatt
ctgaagcgaaaacgtaccgaatttgtgggaacgcttcagaagaaaaaggattttggattt
gtggtggttgatgaggcatccatgtataccgatttctttatctccggcaataaaatgggc
gacgcccaggacggtgataaagtcgtggtagaatttgatgaatggccggaaagagccgat
tctcccttcggaaggattacccgtgttcttggaacacccggtgaacatcaaaccgaaata
cattccattcttgcccaatatggcctgcctcatgaatttccggaaaaggtcgaagaattt
gccaattctctggatacttccattaaccaggaagagattgccaggcggcgggatatgcgg
gatatcctcacttttacgatagatcccaaggatgctaaagattttgatgatgccttaagt
ttcagggaactggaaaatggcaattatgagataggaattcatatcgctgacgtatctcat
tacgtcaagcccaatacgatccttgatgaagaggcttacgatcgtgcgacttcagtttat
ctggtagaccgcgtggtacccatgctcccggagatcctttctaacaatgcctgttcactg
agaccggaagaagaaaaattcactttttcagcagtttttgagatagatgatcaggcaacg
gtaaagaaagaatggtttggtagaacggtcacttattctgatgaacgtttcgcctacgaa
gaagcgcagcacatcatcgagaccaattcaggaactattccagaggagatttctatcagg
aatcatccgtatacggttaaggggcctattgtggaagcggtagtgaccttgaaccgactc
gcaaaaaagatgcgtagccgtagaatgaggggcggggccatttcttttgataaagtggaa
gtgaaattcaacctggatgaaaacaacgatcctacaggggtgttcttcaaagtagctaaa
gacgcgaataaactgatcgaagaattcatgcttttggcgaatcggaaagttgctgaattc
atcggaaaacagaaaccgaaaaaaacctttgtgtatcgctgtcatgatgaaccagatgaa
gaaaagctgcaaaccctgcagaatatcgtgggaagatttggccatcagcttaatttgaaa
gaccgaaaaaccaccacttcctccctgaataaattactcgaagatgtccaggggagaagg
gaacagaacatggttgatacactggccattcgatctatgagcaaagcctattacggtact
gaaaatattggtcattacgggctggcgtttgattattacacgcatttcacttcgcccatt
aggcgatatccagacgtgatggtgcatcgtttgcttcagcattacctggataagaacgaa
tctgccagcgaagaagaatatgagaataaatgtcaccatagcagtgaaatggaaaatctg
gcttccaatgctgaaagagattccatcaaatacatgcaggtgaaattcatgcaggatcat
gaaaatgaagatttccttggagtgatctccggagtgaccgaatgggggatctttgtggaa
attgttgaaaataaatgtgaaggaatgattaggcttcgcgatctgaacgacgatcattac
gagttcgatcctaaagaatttgcggtgaccggaaggaaaaccggtaagacttttactttg
ggagatgaggtttacgtaagggttaaaaatgccgatttgatcaagcgtcatctggatttc
agcatggttggaagtcgggaagaagtggaagattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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