KEGG   Geospiza fortis (medium ground-finch): 102032070
Entry
102032070         CDS       T03755                                 
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
gfr  Geospiza fortis (medium ground-finch)
Pathway
gfr03008  Ribosome biogenesis in eukaryotes
gfr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gfr00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    102032070 (XRN1)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102032070 (XRN1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gfr03019]
    102032070 (XRN1)
   03009 Ribosome biogenesis [BR:gfr03009]
    102032070 (XRN1)
   03016 Transfer RNA biogenesis [BR:gfr03016]
    102032070 (XRN1)
   03036 Chromosome and associated proteins [BR:gfr03036]
    102032070 (XRN1)
Messenger RNA biogenesis [BR:gfr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     102032070 (XRN1)
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     102032070 (XRN1)
Ribosome biogenesis [BR:gfr03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    102032070 (XRN1)
Transfer RNA biogenesis [BR:gfr03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    102032070 (XRN1)
Chromosome and associated proteins [BR:gfr03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    102032070 (XRN1)
SSDB
Motif
Pfam: XRN_N XRN_M XRN1_D2_D3 XRN1_D1 SH3_12 Dicer_dimer
Other DBs
NCBI-GeneID: 102032070
NCBI-ProteinID: XP_014163974
Position
Un
AA seq 1695 aa
MESSLVTEFNHTKDDDVQQKTSYSSSVGIIPDPASNFFSSPFPLSKTVTFLLHLKDKCKP
NKIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISEDKIFANIFHYLEVLFRIIKPRKVFFM
AVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGETLPTEARFDSNCITPGTEFMARL
NEHLKYFVNMKISTDKSWQGITVYLSGHETPGEGEHKIMEFIRSEKAKPHHDPNTRHCLY
GLDADLIMLGLTSHEAHFALLREEVRFGGKKAQRVCAPEETTFHLLHLSLMREYIDYEFS
PVKDKISFEYDIERIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYRTYMGILPELGG
YINENGHLNLERFEKYLTRLSDFDREHFSEVFVDLKWLESKVGNKYLNEAAGIAAEEARK
NKKKQKVSAQENSISLAALEKNEGEVTPKTTLEDEPEDDDLFETEFRQYKRTYYMTKMGV
EVVSDAFLAEQAECYVQAIQWILHYYYHGVQSWSWYYPYHYAPYLSDIHNISELKIKFEL
GKPFMPFEQLLAVLPAASKDLLPKCYQKRLLQAMESCNKGLKEEEKRRNTHSACLMYWYD
KDAEFQYLSPWPEKFPVIERCRTRYKTIPLDAWHVEITHNKITKINKSALYFCGFPTLKH
IKHKFYLKKSGVQVFQQSSHGENMMLEIIVDENSKDQMVENVASSVLGKRVFVNWPHLEE
ARVVAVSDGETKFYLEEPHGTQKLYMGNAVPPTKVAYVGDKEQSMWVKEVQGISEQYQRR
KGIIIHETSVIVYAQLLTGNRYQLNQNGEVYLEKQWSKQVLPFVYQTVVKDIKTFDSRFS
SIKTLDDLFPPGSTAFMLGSPYYGCMGEVHDSHDVIPEGRIRVVFNIPCEPQLDTLIQNQ
HKYSVKYNPAYILASRLGVSGYLVSRFTGSIFIGRGSKKNPHGDHKANVGLNLKFNKKNE
EVPGYTKKVGNEWMYSSAVEQLLAEYLERVPELFNYVAKNSQEDICYEDDIWPGEDENGA
EKVQEIVAWLKAHPVSALSRSSCDLQILDAAIVEKIEEEVEKCKQRKSNKKVRVTVKPHL
LYRPLEQQKGVVPDRDAEYRLFDRVVNVRENFSVPVGLRGTIIGIKGATRETDVLFEVLF
DEEFLGGLTIRCSPARGYRLPSSALINLSHGSRSEMGNQKLMAIVKPQPAVNNYNSYASD
LSSVCSQKVHLGGLNHSPRSLFVPTQAQSKQDDEFCSIWQSLQSSGKSHHIQQNMHEKGA
VLPQEIKLGTGHQFYKPGFNDGSFKCQQRKQEPYKKFKEDSKTTRGESQPHNKMSNQQKD
NELERLLASLKIPKENEVQTYSKEARATNEEHLSPQSFAMKGTQMLKEILKIDGSDLQTK
NEVKSQVNDVPAPSSRHDCHGATVQYRPTKKMAAYMNKHSPGGPQNTPAIETGGHPFPCP
QPALSTVSELSRICSLLGMSQPDFSFLKTPQTMTVCHIKLSNGLLVHGPQCHSEAEAKEK
AALFALQRLGSIGVNFASPQPPAVFPNYQPLGVPVPPGSIPPVFAQPPANMMPPSSHMFG
PVSWSTPVPKHYYPGTYPGNVSLAGTIPVGSHNQFIPLQVTKKRAASKKNFELKEFQSSP
QAAPLKNEQPMSSDHIQQDSSSAPLKSPQAAQSTVSFQDNVATPSVPHNKSTPNTSSKRK
PRKLAVNFGAPKSSE
NT seq 5088 nt   +upstreamnt  +downstreamnt
atggagagcagtttggttactgagtttaaccatactaaagatgatgatgtgcaacagaag
actagttacagcagttctgtggggatcattcctgatcctgcctctaatttcttctcctca
ccatttcctctttccaagacagttacatttctcttacatctgaaggataaatgcaagccc
aacaagattccagaatttgacaacttgtacctggacatgaatggcattatacatcagtgt
tcacatccaaatgatgacgatgtccacttcagaatctcagaagataagatttttgccaat
atttttcactatttggaagtactgtttcgaattattaaaccaaggaaggttttcttcatg
gcggttgatggagtagctccaagagcaaaaatgaatcagcagcgtgggagacgtttcaga
tcagcaaaagaggcagaggacaaaataaaaaaggcattggaaaagggagaaactctccct
acagaagccagatttgactccaactgtattacaccaggaactgaattcatggccagattg
aatgagcatcttaaatattttgtaaatatgaagatttccacagacaagtcctggcaagga
ataacagtctacttatcaggccatgagactccaggggaaggtgagcataaaattatggag
ttcatcagatcagaaaaagcaaagccccatcatgatccaaacacaagacactgtctctat
ggcttagatgctgacttgataatgctgggattaacaagtcatgaggcacactttgcgctc
ttaagagaagaagtcagatttggtggtaaaaaagctcaaagagtgtgtgcaccagaggaa
accacgtttcatttactgcacttatcactgatgagagaatatattgattatgaattttct
ccagtaaaggacaagatttcttttgaatatgatattgaaaggataatagatgattggatc
ttaatgggtttccttgtaggaaatgattttattcctcatctacctcatttacacattaat
catgatgcactgccgctactttatagaacatacatgggtatcttgccagaactgggaggt
tacatcaatgaaaatgggcatctgaatttagaacgttttgagaaatatcttacaagactg
tcagattttgatcgtgagcacttcagtgaagtctttgttgacttaaagtggttggaaagt
aaagtgggcaataaatacctcaacgaagcagctgggattgcagcagaggaagccagaaaa
aataaaaagaaacaaaaggtcagtgctcaggaaaattctatatctttggctgctttagaa
aaaaatgaaggtgaagtgacccctaaaaccacattggaagatgaaccagaagatgatgat
ctgtttgaaactgagtttaggcaatacaaaagaacttactacatgactaaaatgggtgta
gaagtagtgtctgatgccttcttagctgaacaagctgaatgttatgtccaggcaatacaa
tggattttgcattattattaccatggagttcaatcatggagctggtattacccttatcat
tatgcaccttacctgtcagatattcacaatatcagtgaactcaaaatcaagtttgaactt
ggaaaaccattcatgccatttgaacagcttcttgctgtacttccagcagctagcaaagat
ttgctacctaaatgttaccagaaacgactgctgcaggccatggaatcctgtaataagggc
ctaaaagaagaggagaaacgaagaaacactcacagtgcttgcttgatgtactggtatgac
aaagatgctgagttccagtacctgtcaccatggccagagaaattccctgtaatagaacga
tgccgcacgaggtataaaacaatacctttggatgcatggcatgtagaaataacccacaat
aagataactaaaatcaacaagagtgcattgtatttttgtggatttcctactttaaagcac
attaaacataagttctatcttaaaaaaagtggtgtacaagtgtttcaacaaagcagccat
ggagagaacatgatgttggaaatcatagttgatgagaactcaaaggaccagatggtagaa
aatgttgccagttcggtacttggaaagcgagtttttgttaactggccccaccttgaagaa
gccagagttgttgcagtgtcagatggagaaactaagttttatttggaagagccacatggc
acacagaagctttacatgggaaatgcagtgcccccaacgaaagtggcttatgttggagat
aaggagcaaagcatgtgggtaaaagaagttcaaggcatttcagagcagtaccagagaagg
aaaggaataattatccatgaaacttcagtcattgtatatgctcaattactcactggtaat
agatatcaactaaaccaaaatggagaagtttatttggagaagcagtggtctaaacaagtt
cttccttttgtttaccaaacagttgtcaaggatatcaaaacctttgactctcgtttttca
agcatcaaaactttggatgatttgtttcctcctggaagtacagccttcatgctgggatct
ccttactatggctgcatgggagaagttcatgattcacatgatgtgatcccagaaggcaga
atccgggtagtttttaatattccctgtgaaccccagctggatactttaatacagaaccag
cataaatattctgtgaaatacaatcctgcatatattttggccagccgtcttggagtaagt
ggatatcttgtctccagatttacagggagtatctttattggaagaggatcaaagaagaat
cctcatggtgatcacaaagcaaatgtggggctaaacctgaaattcaataagaaaaacgaa
gaagttcctggctatactaagaaagttggaaatgaatggatgtattcttctgcagtagaa
cagctacttgctgagtatttagaaagggtgcctgaactatttaattatgtagccaagaac
agccaggaagatatctgctacgaagatgacatttggcctggagaggatgagaatggagct
gagaaagtgcaagaaattgttgcctggttaaaagcacatcctgtgtctgctttgtctcgc
tcatcttgtgacttgcaaattttggatgcagccattgttgagaaaattgaagaagaagta
gagaaatgcaagcagaggaagagcaacaagaaggtgcgagtaactgtgaaaccccatttg
ctgtacagaccattagaacagcagaagggggttgttccagatcgagatgcagagtacagg
ctgtttgaccgtgttgtcaatgtcagagagaacttttctgttcctgttgggctacgaggc
accatcattggaattaaaggagctactagagaaacagatgtgctctttgaagttttgttt
gatgaagaattccttggaggcctcactatcaggtgctcacctgccagaggttatcgcctg
ccctcaagtgccttaattaacctgtctcatggtagtcggtcagaaatgggaaatcaaaag
ctgatggccatagttaaacctcagccagcagtgaataactacaactcatatgcatctgat
ctgtcatctgtatgctcacaaaaagtgcatctgggaggcctcaaccattctcctcgttcc
ctttttgttcctactcaagcacagagtaagcaagatgatgaattctgcagcatatggcag
tcgttgcagagttctgggaagtctcatcacattcaacaaaacatgcatgagaagggtgca
gttctacctcaggaaatcaagctgggaactggccatcagttttataagccaggcttcaat
gacggcagctttaaatgtcaacaaagaaaacaggagccttataaaaaatttaaagaagat
tccaaaactacaagaggtgaaagtcaaccacataataaaatgtcaaaccaacagaaggac
aatgaactggaaaggcttctagcttctttgaaaattcccaaagaaaatgaagtgcagact
tattccaaggaagcaagagctacaaacgaggaacatctgtcaccacagtcatttgctatg
aaaggaacacagatgctgaaagagattttaaagatagatggctcagatctgcaaacaaag
aatgaagtgaaatcacaagttaatgatgttcctgctccctccagtagacatgattgccat
ggagctactgtgcaatacagaccaaccaaaaaaatggctgcttatatgaacaagcatagc
cctggagggccccagaacacaccagcaatagaaactggaggtcaccctttcccttgtcca
cagcctgcactgtctactgtttctgagctttctcgtatttgttctcttcttggaatgtca
caaccagatttctctttcctaaaaacaccacagaccatgacagtttgccacataaagctg
tccaatggtttgttggttcatggcccgcagtgtcattccgaggctgaagcaaaggagaaa
gctgcgctttttgctttacagcgcttgggttctataggagtaaactttgcttcgcctcaa
cctccagcagtgtttccaaattaccaaccactaggagttcctgtaccacctggatcaatt
cctccagtatttgcacagccccctgctaatatgatgcctccatcgtctcacatgtttggt
ccagtgtcctggagtactccagtgcctaagcattattatcctggcacctacccaggaaat
gtgtctcttgcaggaactataccagttggttctcacaaccagtttatacctctgcaggta
actaaaaaaagggctgctagcaagaaaaactttgaactcaaggagtttcagagttcccct
caagctgcaccactaaagaatgaacagccaatgtcttctgaccacattcagcaagatagt
tcttcagctcctttaaaatctcctcaagctgctcagtccactgtttcatttcaagacaat
gtggctactccaagtgttcctcataacaaatcaacaccaaacacttccagcaagcgaaag
ccaagaaaactggctgtcaattttggcgcaccaaaatcttcagaataa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (43)   

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