KEGG   Geospiza fortis (medium ground-finch): 102033045
Entry
102033045         CDS       T03755                                 
Symbol
CDKAL1
Name
(RefSeq) CDK5 regulatory subunit associated protein 1 like 1
  KO
K15865  threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5]
Organism
gfr  Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:gfr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:gfr03016]
    102033045 (CDKAL1)
Enzymes [BR:gfr01000]
 2. Transferases
  2.8  Transferring sulfur-containing groups
   2.8.4  Transferring alkylthio groups
    2.8.4.5  tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
     102033045 (CDKAL1)
Transfer RNA biogenesis [BR:gfr03016]
 Eukaryotic type
  tRNA modification factors
   Methylthiotransferase
    102033045 (CDKAL1)
SSDB
Motif
Pfam: UPF0004 Radical_SAM TRAM
Other DBs
NCBI-GeneID: 102033045
NCBI-ProteinID: XP_005421024
UniProt: A0A6I9HH57
Position
Un
AA seq 582 aa
MPAACESVLEDIEDIVSAENLKPHDRQFVRRNVFPKVRKRNSQKNAQTDDEPPSDSIIPG
VQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITDNSDEADLWLLNSCTVKNPAEDHFRNS
IKKAQEGKKKVVLAGCVPQAQPRQEYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK
KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVDRA
KQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHL
EEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKQVVDFLKEKVPGITIATDI
ICGFPGETDEDFQETMKLVELYRFPSLFINQFYPRPGTPAAKMPQVPAAVKKQRTKDLSQ
LFHSYNPYDHKVGERQRVLVTEESFDSNYYVAHNPFYEQVLVPKDPLLMGKMVEVNIYEA
GKHFMKGQPVSDARVHTASISRPLAKGEVSGLTEEFRRSAQNGTKWKAQPNAEIPVKTRL
SSWMALQLPWQQEGGGLKILSVSLALLAVLLMLYYGGMKTEL
NT seq 1749 nt   +upstreamnt  +downstreamnt
atgcctgctgcctgtgaatcagtgcttgaggatattgaagacatcgtgtcagcagagaat
ttgaagccacacgatcggcagtttgtgagaaggaatgtttttcccaaagtgcgaaaacgc
aactcccagaagaacgctcagacagatgatgagcccccaagtgacagcattattcctggt
gttcagaaaatctggattcgtacgtggggatgttctcacaataactcagatggtgaatac
atggctggacagctggctgcatatggatacaaaattacagataactctgatgaagcagat
ttatggttgctgaacagttgtacagtaaaaaatcctgctgaggaccacttcagaaactca
atcaagaaagcccaagaagggaagaagaaagttgttctagcaggctgtgtaccacaagct
caacctcgccaggagtacctgaaaggcttaagtattataggggttcagcagatagatcgt
gtagtagaagttgtggaggaaactattaaaggtcattctgtgagactgctgggtcagaaa
aaggataatggaaaacgtttggggggagcacgactggatttgccaaagattaggaagaat
ccactgatagaaataatttctatcaacacagggtgtctcaatgcatgtacctactgtaaa
acgaagcatgccagaggagatctagcaagttatcctattgaagaactggtggacagagcc
aagcagtcttttcaagagggtgtttgtgagatatggctgaccagtgaagacacaggggct
tatggcagagacattggcacagacctccccacgcttctgtggaagctggttgaagttatt
cctgagggagctatgctgaggcttggcatgacaaaccctccctatattttagagcatctg
gaggaaatggccaagattctcaatcatccaagagtgtatgcttttctgcacataccagtc
cagtcagcctctgacagtgtgctcatggatatgaagagagaatactgtgtggcagacttc
aaacaagtagtggatttccttaaagaaaaagtgcctggaataacaattgctacagacatc
atctgtggatttccaggagagacagatgaagattttcaagaaactatgaaacttgtagaa
ctgtataggtttccaagcttgtttattaatcaattctacccacgtccaggaaccccagct
gcaaaaatgcctcaagttccagctgcagtgaaaaaacagagaacgaaggatctgtcccag
ctgtttcattcatacaacccatatgaccataaggttggtgagaggcagagagttctagta
acagaagaatcctttgactccaattactatgttgctcacaatcctttctatgagcaggtt
cttgtgccaaaggatcctctgttaatgggtaagatggtagaagtgaatatttatgaagct
gggaaacattttatgaagggacagccagtatcagatgccagagttcatactgcatccatc
agcagaccattagcaaaaggagaagtttctggtttaacagaggagttccgacgttcagca
cagaatggcacaaagtggaaagcacagcctaatgctgagatcccagtgaaaacacggctc
agctcctggatggctttgcagctgccatggcaacaagagggaggtggactgaagatcctg
tctgtcagcctggctctactggcagttcttcttatgctttactatggaggaatgaaaaca
gaactgtga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (31)   

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