KEGG   Geospiza fortis (medium ground-finch): 102035676
Entry
102035676         CDS       T03755                                 
Name
(RefSeq) putative RNA exonuclease NEF-sp
  KO
K14570  RNA exonuclease [EC:3.1.-.-]
Organism
gfr  Geospiza fortis (medium ground-finch)
Pathway
gfr03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:gfr00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    102035676
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:gfr03009]
    102035676
Ribosome biogenesis [BR:gfr03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    102035676
SSDB
Motif
Pfam: RRM_1 RNase_T EzrA DNA_pol_A_exo1 Na_H_antiport_3 TMF_DNA_bd
Other DBs
NCBI-GeneID: 102035676
NCBI-ProteinID: XP_005420449
Position
Un
AA seq 827 aa
MAASRGCGESPKPCTAAGYREGRVQPVPADNNTECPELFAGLIESSSWPWSCGQSSPATC
LRALSERFSNLGTFGAVTSALGSLLLAFPFPQGKSCHLSAALLGEDSEISQEQLYELLKY
AALGKCHNAAQPSWCRIYHQSHLAGVVVVVLHEMSQLHFYRFYLQFKHLRRTFRHRFTLA
PSANFPLSLYGEGTNLKPQNTPQGLTSPSSECITKSSDLQCDPIIQRYGGKKQGLTSYTL
TLEEQKKNDYPIEGSPGCKGYISTECDQQRTDSSPLFGLDCEMCLTAKGNEVTRVSLVDA
RGQCLLNELVKPESTVVNYRTRFSGITRKMLLPVKTRLSDIQTRLKKMLPHDAVLVGHSL
NSDLQALEMIHPSVIDTSLLFARSEGRRFKLKFLAKAVLGKEIQCEQKLGHDPTEDARAA
LELAQFFIEQGPTKVAELNLEMLLTAEKLAEVSQNKAVLQPQGCGFQEQLNEPPPLSKPC
FLDCLQVTGQKPLLLGRQGSDSSGLCQSNLSTSNKQILQRALEDVPLSKFSIIQFSLGPE
YLASHLHAGLHEKVRSKLTDMLTIYAGPFEENFCMKSVKKEFGRCGPIQSLTVVTETFQP
YVCIQYEVLEAAQLAVECLNGAEVAGSCIKVQRPVTAAMLDCNVLIKELELDVENQGVIY
VAGLKKSLTETDLQEEFSQLKDLETLFLPKDLQSGKHRNCCFLKFQKTQSAVDALEAING
WTMKGSELRSRNALAPGHLWKWIWQTNHSNGKQGKHIFYEKMEQLCDSEQDLRKKVKKLD
QHIKKLYRSLQNNTLCVVLFPGVNSTHGSQPGLGLMGIKDDEGRSAC
NT seq 2484 nt   +upstreamnt  +downstreamnt
atggccgcttcgcgggggtgcggggagtccccaaagccgtgtacagccgcagggtaccgg
gagggtcgggtgcagccagtgcctgctgataacaacacagagtgtcccgagttgttcgca
gggctcatcgagtccagctcctggccctggagctgtggccagtccagtcccgccacgtgc
ctcagagcattgtccgaacgcttctcgaaccttggcacgtttggggccgtgacctctgcc
ctggggagcctgttactagcatttccctttccacagggaaagtcctgtcatttgtcagca
gctctgctgggcgaggactctgaaatcagccaggagcagctgtatgagctgctgaaatac
gcagctctggggaaatgccacaacgcagcacagcccagctggtgccgtatttatcaccaa
agccacctggctggggttgtggttgttgttctacacgaaatgagccaactccatttctac
agattctatttgcagttcaaacacctcaggagaacgttccgccatagattcacattagca
ccttctgctaacttcccactcagcctgtatggagaaggaacaaacctgaaacctcaaaac
actccacaaggcttgacttcccccagcagtgagtgcattactaaaagctcagacttgcaa
tgtgatcccatcattcagagatacggaggaaaaaaacaaggccttaccagctatactcta
actttagaagagcagaaaaaaaatgactatcccatagaaggttctcctggatgcaagggc
tacatctccacagagtgtgatcagcagaggacagacagcagccccctcttcggtctggat
tgtgaaatgtgcctgactgcaaaagggaacgaagtgacccgcgtgtcgctggtggatgcg
cggggtcagtgcctcctgaatgagctggtcaaaccggagagcacagtggtcaactaccgc
accagattctcaggaatcacaaggaaaatgcttcttccagtgaagacaagactgtcagac
atccaaaccaggctaaaaaaaatgcttccccatgatgcagtattggtgggtcattcttta
aattctgatcttcaggctttggaaatgatccaccccagcgttattgatacttcactgctt
tttgccagaagtgaaggtcgaagatttaagctaaaatttctagccaaagctgttttaggg
aaggagattcagtgtgaacagaagcttgggcatgatcctacagaagatgctagagctgca
ttggagttagctcaattcttcattgagcaaggaccaacaaaggtagcagaactaaacttg
gagatgcttctgacagctgaaaaactggctgaggtctcacagaacaaagctgtgctacag
ccacaaggatgtgggttccaggaacagctgaatgagcctccaccattatccaaaccatgt
tttttagattgtctgcaggtgactggccaaaaacctctccttttgggcagacagggatca
gactcttctggcctgtgtcagagtaacctgagcacttcaaacaaacagatccttcagaga
gccttggaagatgttcccctgtccaaattcagtatcattcagttcagtttgggtccagag
taccttgcatctcaccttcatgctggacttcatgaaaaggtgagaagcaagctgactgac
atgctgacaatttacgcaggtccttttgaagaaaacttctgcatgaagtctgtgaagaaa
gaatttgggaggtgtggaccaatccagtcccttacagtggtaactgaaacattccagccc
tatgtctgtatccaatatgaagtgctggaagctgcccagcttgctgtggagtgcctgaat
ggagctgaggtggcaggatcctgcattaaggtccagagaccagtcactgcagcaatgctg
gactgcaatgttctgattaaggaattagaactggatgtagaaaatcaaggtgtgatttat
gtggctggtctaaagaagtcattaacagagacagacttgcaagaagaattcagccagttg
aaagacctggaaacactgttcctgccaaaggatcttcagagtgggaagcacaggaactgc
tgcttcctcaaattccagaaaacccagagtgctgtggatgcccttgaagccataaatgga
tggaccatgaagggtagtgagctaagaagtaggaatgcccttgctccaggtcacctctgg
aaatggatttggcaaacgaatcacagcaatgggaagcaaggaaaacacatcttctatgag
aaaatggagcagctgtgtgactctgagcaggatctaaggaaaaaggtgaagaagttagac
cagcatatcaaaaagctttataggagcctgcagaataacaccctgtgcgttgttctcttt
cctggagtgaacagcacacatggatcacaacccggccttggtctgatgggaataaaagat
gatgaagggaggagtgcttgttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (31)   

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