KEGG   Geospiza fortis (medium ground-finch): 102037580
Entry
102037580         CDS       T03755                                 
Symbol
LSM5
Name
(RefSeq) LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
gfr  Geospiza fortis (medium ground-finch)
Pathway
gfr03018  RNA degradation
gfr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gfr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102037580 (LSM5)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102037580 (LSM5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gfr03019]
    102037580 (LSM5)
   03041 Spliceosome [BR:gfr03041]
    102037580 (LSM5)
Messenger RNA biogenesis [BR:gfr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     102037580 (LSM5)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     102037580 (LSM5)
Spliceosome [BR:gfr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    102037580 (LSM5)
SSDB
Motif
Pfam: LSM SM-ATX LSM14
Other DBs
NCBI-GeneID: 102037580
NCBI-ProteinID: XP_014166463
UniProt: A0A6I9ZDW5
Position
Un
AA seq 83 aa
MLFCVSTELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITK
LDQILLNGNNITMLVPGGEGPEV
NT seq 252 nt   +upstreamnt  +downstreamnt
atgcttttctgtgtatctacagaacttgtggacaagtgcatcggttcacgtattcacatc
gtgatgaagagcgacaaagaaattgttgggacacttctaggatttgatgactttgtcaat
atggtgctggaagatgttacggaatttgagatcacacctgagggcagaagaatcacaaag
ctggaccagattctgctcaatggaaataacataactatgctggttcctggaggagaagga
cctgaagtatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (30)   
   KEGG ORTHOLOGY (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (3)   
   Pfam (3)   
All databases (46)   

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