KEGG   Geospiza fortis (medium ground-finch): 102037903
Entry
102037903         CDS       T03755                                 
Symbol
DDB1
Name
(RefSeq) damage specific DNA binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
gfr  Geospiza fortis (medium ground-finch)
Pathway
gfr03420  Nucleotide excision repair
gfr04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:gfr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    102037903 (DDB1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    102037903 (DDB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:gfr04121]
    102037903 (DDB1)
   03400 DNA repair and recombination proteins [BR:gfr03400]
    102037903 (DDB1)
Ubiquitin system [BR:gfr04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Adoptor protein
     102037903 (DDB1)
DNA repair and recombination proteins [BR:gfr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      102037903 (DDB1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      102037903 (DDB1)
SSDB
Motif
Pfam: MMS1_N CPSF_A
Other DBs
NCBI-GeneID: 102037903
NCBI-ProteinID: XP_005426640
UniProt: A0A6I9HNH2
Position
Un
AA seq 1122 aa
FPGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKTAVMELFRPKGESKDLLF
ILTAKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDG
LFKVIPLDRDNKELKAFNIRLEELQVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLR
EKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTI
VCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLD
NGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTC
SGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPHRETDNTLVLSFVGQTRVLML
NGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKSLVSEWKEPNGKNI
SVASCNSNQVVVAVGRALYYLEIRPQELRQISCTEMEHEVACLDITPLGDSNGMSPLCAI
GLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLSL
ETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNY
MCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSS
RIEVQDASGGTTALRPSASTQALSSSVSTSKLFSSSTAPHETSFGEEVEVHNLLIIDQHT
FEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFHYSDGKL
QSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELRTECNHYNNIMALYLKTKG
DFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQ
KDSAATTDEERQHLQEVGLSHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIG
LVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFL
DISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEELTRIH
NT seq 3369 nt   +upstreamnt  +downstreamnt
ttcccaggacacttcacctctgcggaggacctgaacctgctgattgccaaaaacacccgg
ctggagatttacgtggtgacggccgaggggctccggcccgtcaaggaagtggggatgtac
gggaaaaccgccgtcatggagctcttccgccccaagggggagagcaaggatttgctgttc
atcctgacggccaagtacaacgcctgcatcctggaatacaagcagaacggggatagcatc
gacatcatcacccgtgcccatggaaacgtgcaggatcgcatcgggcggccctctgagacc
gggatcatcgggatcatcgatcccgagtgccggatgatcgggctgcgcctctacgatggc
ctcttcaaggtcatccccctggatcgggacaacaaggagttaaaggccttcaacatccgc
ctggaagagctccaggtcatcgatgtgaaattcctttatggctgccaagctcccaccatc
tgcttcgtctaccaggacccccagggccgccacgtgaagacatacgaggtgtccctgcgg
gagaaggaattcaacaaaggcccttggaagcaggaaaatgtggaggccgaagcctccatg
gtcattgcagtgccggagcccttcggaggcgccattatcatcgggcaagaatccatcacc
taccacaatggggataaatatctggctattgctcctcccatcatcaagcaaagcaccatc
gtgtgccacaaccgcgtggatcccaacggatcgcggtatttgctgggagacatggaaggg
aggctcttcatgctactcctggagaaggaggagcagatggacggcactgtcaccttgaag
gatctgcgtgtggagctgctgggagagacatccattgcagagtgcctgacctacctggat
aacggagtggtttttgttggctccaggcttggagattcccagctcgtgaagcttaatgtg
gacagcaacgagcagggatcctacgtggtggccatggagaccttcaccaatctcgggccc
atcgtggacatgtgcgtggtggacctggagaggcaaggccaaggccagctggtcacctgc
tccggggccttcaaagagggatcgctgcggatcatccggaacggcatcgggatccacgag
cacgccagcatcgacctgccaggaattaaaggattgtggccgctgaggtcagatccacac
cgggagacagacaacaccttggtgctgtcatttgttggccagaccagggttctgatgttg
aacggagaggaagtggaagagacggagctcacaggatttgtggatgaccagcagaccttc
ttctgtggcaacgtggcgcatcagcagctgatccagatcacgtctgcctcggtgcgactg
gtcagccaggagcccaaatccctggttagtgagtggaaagagcccaatgggaagaacatc
agcgtcgcttcctgcaacagcaaccaggtggtggtggccgtgggaagagccttgtactac
ctggaaatccggccccaggagctgcggcagatcagctgcacagagatggagcacgaggtg
gcctgcctggacatcacccccctgggagactccaacgggatgtccccgctctgtgccatc
gggctctggaccgacatctctgcccgcatcctgaagctcccatccttcgagctgctgcac
aaggagatgctgggaggagagattatccctcgctccatcctgatgacgaccttcgagagc
agccactacctcctgtgtgccctgggggacggagctctcttctacttcggcctcagcctt
gagacaggcttgctgagtgacaggaagaaggtgaccctgggcacacagcccacggtgctg
aggacattccgctccttgtccaccaccaacgtgttcgcctgctccgaccgccccaccgtc
atctacagcagcaaccacaagctggtcttctccaacgtcaacctcaaggaggtcaactac
atgtgccccctcaattccgacggatatcccgacagtttggccctggccaacaacagcacc
ctgaccattggcaccatcgatgagatccagaagctgcacatccgcactgttcccctctat
gagtcacccaggaaaatctgctaccaagaggtatcccagtgcttcggagtgctctccagc
cggatcgaggtgcaggatgccagtgggggcaccacagcgctcagacccagtgccagcacc
caggccttgtccagcagtgtgagcaccagcaagctgttttccagcagcacagctccacat
gaaacatcctttggagaggaggtggaagtgcacaacctgctcatcatagaccagcacacc
tttgaagtgctccatgctcaccaattcctgcaaaatgagtatgccctcagcctggtctcc
tgcaagctgggaaaggatcccaacacctacttcattgtgggcactgccatggtgtatccc
gaggaagcggagcccaagcagggccggatcgtcgtcttccactactcagatgggaagctg
cagagcctggctgagaaggaggtcaagggagctgtgtattccatggtggaattcaacggg
aagctgttagccagcatcaacagcacggtccgcctgtacgagtggacagcggagaaggaa
ttgcgcacggagtgcaaccactacaacaacatcatggccctgtacctgaaaaccaagggg
gatttcatcctggtgggagacctcatgcgctccgtgctgctcctggcctacaaacccatg
gaagggaatttcgaggagattgcccgggatttcaatccaaactggatgagtgccgtggag
atcctggatgatgataatttcttgggagcggagaatgctttcaatctgttcgtgtgccag
aaggacagcgcggccacgacggatgaggagcggcagcacctgcaggaagtgggattatcc
cacctgggagagttcgtcaatgtcttctgccacggatccctggtcatgcagaacttggga
gagacttccacgcccacccagggatccgtgctcttcggcactgtcaatggaatgattggc
ctggtgacatccttgtcagaaagctggtacaacctgctcctggacatgcagaacaggctc
aacaaagtcatcaagagcgtggggaagattgagcattccttctggagatcgttccacact
gaacggaagacggaaccagccacaggattcatcgatggagacttgattgagagtttcctg
gacatcagcaggcccaagatgcaggaagtggtggcaaacctgcagatcgatgatggaagc
gggatgaagagggaagccaccgtagatgacctgatcaagatcgtagaggagctgacccgg
atccattag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (23)   

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