KEGG   Geospiza fortis (medium ground-finch): 102040674
Entry
102040674         CDS       T03755                                 
Symbol
CTR9
Name
(RefSeq) CTR9 homolog, Paf1/RNA polymerase II complex component
  KO
K15176  RNA polymerase-associated protein CTR9
Organism
gfr  Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:gfr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gfr03021]
    102040674 (CTR9)
Transcription machinery [BR:gfr03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    PAF1 complex
     102040674 (CTR9)
SSDB
Motif
Pfam: TPR_1 TPR_19 TPR_2 TPR_14 TPR_8 TPR_16 TPR_12 TPR_17 TPR_10 TPR_6 TPR_11 TPR_7 TPR_9 ANAPC3 TPPII_C
Other DBs
NCBI-GeneID: 102040674
NCBI-ProteinID: XP_014164717
Position
Un
AA seq 1228 aa
MHYTQLLLIPGIQETLLTPSIASWGSISVDTPIPRGRCATGVRRSRHHPHTALVPPSNRP
GAGPGPLRPVAEHVRVIELDFDQLPEGDEVISILKQEHTQLHIWIALALEYYKQGKTEDF
VKLLEAARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKELITQATLLYTMA
DKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYR
GALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAV
LELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYGKVQHLALHAFHNTE
VEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSSFVLPFFGLGQMYIYRGDKENA
SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ
ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDR
AKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAM
ARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQND
TYSMLALGNVWLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDPKNLYAANGIGAVLAHK
GYFREARDVFAQVREATADISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVL
LYLARALFKCGKLQECKQTLLKARHVAPSDTVLMFNVALVLQRLATSVLKDEKSNLKEVL
NAVKELELAHRYFSYLSKVGDKMRFDLALAATEARQCSDLLSQAQYHVARARKQDEEERE
LRAKQEQEKELLRQKLLKEQEEKRLREKEEQKKLLEQRAQYVEKTKNILMFTGEVEGSKE
KKRGGGGGRRSKKGTGEFDEFVNDDSDEDLPISRKKKKRKGSGSEQDGEEEEGERKKKKR
RRPQKAEEGSDDEEHENGPRPKKRRPPKAEKKKAPKPERLPPSMKGKIKSKAIISSSDDS
SDEDKLKIADDGHARNSNSDSEEGEQQHSKRIVSDSDSDNRNKSGSEAGSPRRSSARASE
EESDSDRSPRKRRRSESEQSDNESVQSGRSRGSGGSENESRPASRSPESDRDSERGSDHE
GSARASGNESEPEASNDEGSEGGSDDSD
NT seq 3687 nt   +upstreamnt  +downstreamnt
atgcactacacgcagttgcttttaattccaggaattcaagaaaccttgttgacacccagc
attgcctcctggggatccataagcgtagatacaccaattcctaggggcaggtgtgcaaca
ggggtcagaaggagcaggcaccaccctcacaccgcccttgtaccgccctcgaaccgcccc
ggggccgggcccggcccgctccgccccgttgccgagcacgtccgggttattgagcttgac
ttcgatcagttgcccgagggtgatgaagttataagtattctgaaacaggagcacacccag
ctgcacatatggattgccctagcgctggagtattacaagcaaggcaaaacagaagacttt
gtgaagctgctggaagctgcccgcatcgatggcaacctggactacagagaccacgagaag
gaccagatgacatgtctggacaccctggcagcctactatgtacagcaggctcggaaggag
aagaacaaagacaacaagaaggagctcatcacccaggccaccctgctgtacactatggct
gacaaaatcatcatgtatgatcagaatcacttgttgggaagagcctgcttttgcctgctt
gaaggtgataagatggaccaagctgatgcccagttccacttcgtgctcaaccagtctcca
aataatattcctgccctacttggtaaggcatgcatttctttcaacaagaaggattataga
ggagcccttgcctactacaagaaagcactgcgtaccaatccaggctgcccagccgaggtt
cggttgggaatgggtcactgctttgtgaagctgaacaagctggaaaaagctcgcctggcc
ttcagcagggctctggagctcaattccaagtgtgtcggggccttggttggactggctgtt
ctggagctcaataataaggaggctgattccatcaagaatggtgttcaactcctctctagg
gcttatacaattgatcccagcaatccaatggtgttgaatcacttggctaatcacttcttt
ttcaagaaggactatggtaaagtacaacacttagctcttcatgctttccataacacagaa
gtggaagcgatgcaggcagagagctgttaccagctggcaaggtcttttcatgtacaggaa
gattatgatcaagctttccagtattattaccaggccactcagtttgcctcatcttctttt
gtacttccgttttttggattgggtcaaatgtacatttatcgaggggacaaagagaatgct
tcacaatgctttgaaaaagtcttgaaagcctaccctaacaattatgaaactatgaaaatc
cttggatctctttatgcagcttcagaagaccaggagaaacgggatattgcaaaggggcat
ttaaagaaagtcacagaacaatatcctgatgatgtagaggcttggattgagctagcccaa
attctagaacagactgatatacagggtgctctgtcagcctatggcacagccacacgcatt
ctgcaggagaaagtacaggctgatgtccctccagagatcctgaataacgtgggtgccctg
cacttcaggctgggaaacctgggagaagcaaagaaatacttcctggcatcgctggatcgt
gcgaaagcagaggctgagcatgatgagcattactacaatgccatctctgtgacaacatcc
tacaaccttgccaggctctacgaggccatgtgtgaatttcatgaagctgaaaagctctat
aaaaacattctgagagaacatccaaattacgttgattgctacttgcgcttgggagctatg
gctagggataaagggaatttttatgaggcttctgattggtttaaagaagcacttcaaatc
aatcaggaccatccagatgcctggtctctgattggcaatcttcacttggctaaacaagag
tggggtccaggacagaagaaatttgaaagaatattgaagcagccctccacacaaaatgat
acttattccatgctggctcttggcaacgtctggttacagactctccatcaacccacaaga
gacagagaaaaggagaaacgtcaccaggaccgtgcattagccatctacaagcaagtcctc
agaaatgacccaaagaatttgtatgctgctaatggcataggagctgtcttggcacacaag
ggatatttccgtgaagctcgtgatgtttttgcccaagtgagagaggccacagcagatatc
agcgatgtgtggctgaatttggcacacatctacgtggagcagaagcagtacatcagtgct
gtgcagatgtatgaaaactgcctcagaaagttctataagcaccaaaacactgaagtgttg
ttatatttggcccgggcactgttcaaatgtggcaaattacaggaatgcaaacaaactttg
ttaaaggccaggcatgtggctccaagtgatacagtcctcatgtttaatgtggctttagtg
ctgcaaagacttgctacctctgtcctgaaagatgaaaaaagcaatctgaaggaagtcctt
aatgctgtgaaggagctggagctcgcccacaggtacttcagttacttgagtaaagtaggt
gataagatgagatttgacttggcacttgctgctacagaagccaggcagtgctctgactta
ctgagccaggcccagtatcatgtggctcgggcacgcaagcaggatgaggaggagagggag
ctgcgtgccaagcaggagcaggagaaggagctgcttcgccagaaactgcttaaagaacag
gaagagaagcgcctgagagaaaaagaagagcagaagaagcttctggagcaaagagctcaa
tatgtggagaagaccaagaatattctgatgttcactggtgaagtagaaggatcaaaggag
aaaaaacgtggtggcggtggaggcaggcgttccaaaaaaggaacaggggagtttgatgag
tttgtcaatgatgacagtgatgaagatctgcccatctctagaaagaaaaagaagaggaag
ggcagtggcagtgaacaggatggggaagaagaggagggtgagagaaagaagaagaagagg
aggagaccccagaaggcagaagaggggagtgatgatgaagaacatgaaaatggcccacgg
cctaagaagcgacgtccacccaaagcagagaagaagaaggctcccaaaccagagcgtctg
cctccttcaatgaaaggaaagatcaaatcaaaagccatcatttcatcaagtgatgattct
tctgatgaggacaaactgaaaattgctgatgatgggcacgctagaaatagcaacagcgat
tctgaggagggggagcagcagcacagcaaacgcattgtttccgacagcgattcggataac
cggaacaagtcgggcagcgaggcaggcagtccccgcaggtccagcgcccgcgcctccgag
gaggagtctgacagtgaccggtccccgaggaagaggcggcgctcggagtcggagcagtcg
gacaatgagtccgtgcagtcggggaggagccgcggctccggcggctccgagaacgaatcg
cggccggcttcgcgcagccccgagtccgacagggactccgagaggggctctgaccacgag
gggtctgccagagcttctgggaacgagtctgagccagaggcatccaatgatgagggctct
gaagggggctcggatgacagcgattag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (40)   
   KEGG ORTHOLOGY (1)   
   RefGene (36)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (15)   
   Pfam (15)   
All databases (60)   

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