KEGG   Geospiza fortis (medium ground-finch): 102041386
Entry
102041386         CDS       T03755                                 
Symbol
COL4A5
Name
(RefSeq) collagen type IV alpha 5 chain
  KO
K06237  collagen type IV alpha
Organism
gfr  Geospiza fortis (medium ground-finch)
Pathway
gfr04510  Focal adhesion
gfr04512  ECM-receptor interaction
gfr04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:gfr00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    102041386 (COL4A5)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    102041386 (COL4A5)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    102041386 (COL4A5)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:gfr04147]
    102041386 (COL4A5)
   00536 Glycosaminoglycan binding proteins [BR:gfr00536]
    102041386 (COL4A5)
Exosome [BR:gfr04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   102041386 (COL4A5)
Glycosaminoglycan binding proteins [BR:gfr00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   102041386 (COL4A5)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 102041386
NCBI-ProteinID: XP_014162021
Position
Un
AA seq 1674 aa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NT seq 5025 nt   +upstreamnt  +downstreamnt
atggtaaatgtgtgcggtgtggcttgccatggatgtacatctttatccaaatgtgattgc
agtggagtaaaaggtgaaaagggtgaaagaggattcccaggcttggaaggacagccaggt
ttgcctggatttccaggaccagaaggaccacctggtccaagaggctcaaagggtgatgat
ggtcttccagggcctattggacccaaaggaatcagaggaccgccagggcttccgggcttt
ccaggaacaccaggacttcctggattgccaggacaagatgggccaccaggacctcagggt
atcccaggatgcaatggaacaaagggagagcgtggattcccaggcagtccaggttttcct
ggtttacaagggcctcctggaccccctgggctgcctggtatgaagggtgaagcaggtgaa
gtaattacatccttgctgccaggacagaaaggtgacccaggatttccaggtcttccaggg
atacctggcccccctggctccgtgggaataccaggtccagttggccctccagggccccca
ggtttgacgggacctcctggtccaccagggctgccaggacccaagggtaatatgggtttg
aatttccaaggacctaaaggtgaaaaaggtgaacaaggtcttcagggacctccagggcca
ccaggacaaattggagaacagaaaagaccaaatgacattgagtttcagaaaggagatcag
ggtattccaggtgatccaggcccaccaggacttcctgggcctccaggccctcctggtctt
cccggtggtgtgaaaggtgaaaaaggtgagcaaggagaaccaggcaaaagaggaaaaccc
ggcaaagatggagaacctggtcagcctggtagggatggtttacctggtgggcctggaata
aatggtgctccaggaagagatggtgaaaagggtgaaaaaggtgacatgggtccccctggt
cctcctggaattgttgttccaaggccaggcattgatgcaacagtgggaccaaaaggtagc
aaagggttgccaggacttccaggagccaaaggggaccgtggattctctggtaggccaggc
ccacctggcttgccaggatctccagggatcactactgttggacctcctggcccacctggc
ttacctggtgagagaggacagaagggagatccaggtttacctggggtttctattcctggg
caaccaggagttgagggaccacgaggaccgccaggaccaccaggtcccccagggccacct
gcaccatctgttgctcctggtgaagggttatgtgagcaagggccaccaggtcctccagga
attccaggacaacaaggttttacaggggagcgaggccaaaaaggtgaccgaggagacacg
tgcttcaactgcataggaactggagtaactggtcctcctggggagaggggaccaccagga
cctccgggtagtccaggttctcctggttttcctggaccaaaaggtgaaaaggggcttcct
ggattaactggccttgtagggccaccaggcttcccaggcaccccaggtgctcctggtaga
cctggtcctaaaggagacccaggggatgtcctgacttctccaagactgaaaggtgacaaa
ggagaccctggcttcccaggacctccaggtctccctggcatagatggcactcctggacga
gatggactgccaggtttgcctggccctaagggggaacctggcagtgttgcattcaaagga
gaaatgggtattccaggtgacccaggaataccaggtcttcctggagagaaagggcttcct
ggacctcctggttttggtccacaaggctcacctggtgaaaagggcatccaaggtgtatct
ggccgtccaggacctcctggtgtcccaggtccaaaaggtgaccctggccagactattaca
gaaccaggagttcctggtccccctggtcctccaggaagaattggtgatccaggtcttcca
ggagatcctggtcagccaggtcagcgtggtttacctggcatcccaggtccaaagggagag
ccaggtattcctggcattggacttccaggtccaccaggcccaaagggtttcccagggact
ccaggcccgcccggagctccaggaactccaggtcgccctggtctggatggacctcctgga
ccacccggtttcccaggagagaagggagagcgtggatttggagttccaggaccacctggg
gccccaggaccccctggcataaaaggaggtcaaggacctaaaggtgatcctggcttccca
ggaaaccctggtctcccgggccgggcaggctttgatggaaccccagggcccaaaggtgac
cctggaccaagtggaccaccaggacttccaggagcaccaggcattcctggcatcggtggt
caaggtcctcctggatctccaggacctccaggtcctgttggccccccaggtcccccaggg
ctgcaaggcattccaggggagaaaggggatccaggtcctccaggcttcgatattcctggt
cctccaggtgaccaaggagctccaggatatccagggccccctggactaccagggcctcag
ggttcacctgggcctcctggcagggatggaatacctggatttccaggtgccaaaggtgag
atgggtgtcatgggagctcctggtcctccagggcctccaggaactcctggaagaaatggt
ctgcctggcttgaaaggtaatagtggattacctggtccaccaggacctcctggaccagtg
gggcagaaaggcatcaaaggtgaagcaggtctgccaggtccaccaggaacacttgatccc
aaacagctgggagcaaaaggagaaaaaggcgagccaggtgttccaggtatccctggttta
tcaggccagaaaggttatcaaggtctcccaggtgacccaggcccaccaggacttagtggc
ccaccaggtgtgccaggattgccaggcatcaagggagacatggggcttcctgggcagcca
ggaccaacaggacctccaggattaaaaggagctatgggagagatgggtcttccaggtccc
cctgggcttaaaggcaaccaaggactagcaggacgtccagggcagcctgggcctgcagga
tttcctggactgaaaggggagaaaggtgaccctggtctttcaggcattggtattcctggt
ccccctggaccaaagggagatcttggcttgcctgggtacccaggtagtccaggctctaaa
ggtatagctggaaatcctggtttgcctggatttccaggcagtccaggtgcaaaaggagaa
ccaggccttcctggattcccaggaacacctggaattccaggaccaaaaggtattgagggc
cctccaggtaatcctggcctgcctggaccacctgggccagtaggtgatattggtcgtcct
ggccctcctggtccttcaggggaaaagggacaacctggtcgagatggtatccctggacca
gcgggtcagaagggtgaaccaggtctaccaggttttgggcgtccaggacctccaggactc
ccaggattgtcagggcaaaaaggagaactggggttacctggcccaccgggaccccctgga
cttccaggaccaaagggagaaccaggtttccagggattccctggtctgcagggtccacca
ggtccaccaggaataccagggccacctctggaaggtcctaaaggtagccctggcccacca
ggtgttccaggaaggccaggtccctcagggcctccaggtccaccaggcccagaaggtcca
cgagggccaccaggcattggaggacttaaaggggaaaaagggaacccaggtccacctggt
ccacctggcctgactggtccaaagggagatcaaggaccacctggacgccagggggatcct
ggtcgtccaggtctgaatggaatgaagggtgaccccggggttccaggcgttccaggattc
ccaggtatgaagggtcccactggacctgcaggacccgctggcctcacaggcagccaggga
ctgccaggcccaccaggtccaccaggtttaccaggcaccattggacgaagcattgttgtc
aaaggtgatcctggttccccaggtcctccaggacagcctggctccaaagggccacctgga
ttgccagggccacagggattgccaggtccaattggtcttcctggcgacccagggagagat
ggacttcctggttttgatggtccagcaggacgaaaaggagagagaggtcttccaggccaa
ccaggttcacgaggaatacaaggacctcctggtcctgatggcttacaaggcccacctggt
gctcctggaacagcttctgttgctcatggattccttataactcggcacagccagaccagg
gatacaccactatgtccacagggaacagcaagaatatatgatggattctctcttctatat
gtgcaaggaaatgagagagcacatggccaggatttgggtactgctgggagctgtcttaga
cgtttcagcaccatgcccttcatgttctgcaacatcaacaatgtttgtaactttgcatca
aggaatgactattcctactggctgtcaacccctgagtcgatgccgatgagcatggagcca
ctgactgggccaagcatccagcccttcatcagccgatgtgttgtgtgtgaagctcctgct
atggtgatagctgtccacagccagaccattcagatcccttcatgtcctccaggctgggac
tccctctggattggttactctttcatgatgcacacgagtgctggagcagagggctctggg
caggccttggcatctcctggctcctgtttggaagagttccgctcagcgccgttcatcgaa
tgccatggccggggcacctgtaattactatgccaattcctacagcttctggctggcaact
gtagaggtgtcagaaatgttcagcaaacctcagtctgagacactgaaagctggagacttg
aggacacggattagtcgttgtcaagtttgcatgaagaagacgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (44)   
   KEGG ORTHOLOGY (1)   
   RefGene (40)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (57)   

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