KEGG   Geospiza fortis (medium ground-finch): 102042212
Entry
102042212         CDS       T03755                                 
Symbol
ATG16L1
Name
(RefSeq) autophagy related 16 like 1
  KO
K17890  autophagy-related protein 16-1
Organism
gfr  Geospiza fortis (medium ground-finch)
Pathway
gfr04136  Autophagy - other
gfr04140  Autophagy - animal
gfr04621  NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:gfr00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    102042212 (ATG16L1)
   04136 Autophagy - other
    102042212 (ATG16L1)
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    102042212 (ATG16L1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:gfr04131]
    102042212 (ATG16L1)
   03029 Mitochondrial biogenesis [BR:gfr03029]
    102042212 (ATG16L1)
Membrane trafficking [BR:gfr04131]
 Autophagy
  Autophagosome formation proteins
   Atg12 conjugation proteins
    102042212 (ATG16L1)
 Others
  Rab GTPases of specific organelles
   Auto phagosome
    102042212 (ATG16L1)
Mitochondrial biogenesis [BR:gfr03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    102042212 (ATG16L1)
SSDB
Motif
Pfam: WD40 ATG16 ANAPC4_WD40 eIF2A NBCH_WD40 Ge1_WD40 CCDC93_CC Fez1 WD40_like HTH_6 Lipoprotein_6 AP5B1_middle HEF_HK Peptidase_M15_4 PALB2_WD40 DUF2332 KASH_CCD V_ATPase_I YabA Phage_GPO
Other DBs
NCBI-GeneID: 102042212
NCBI-ProteinID: XP_005430271
UniProt: A0A6I9HUA2
Position
Un
AA seq 545 aa
MQSRHEISPGHDSTWNDAQLQELAQLKIKHQEELTELHKKRGELAQSVIDLNNQMQQKDK
EMQMNEAKIAEYLQKISELETECQELRSKLQDLERANQTLKDEYDALQITFNALEEKLRK
TTEDNQELVSRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEPDDDIEV
LADETSDTAEETSPVRAVSRTSSKRLSQPAGGLLDSISNIFGRRSLSSFPAPQDNAEPHP
GASKEVRVPTTAICVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVLGDRCEPKGSL
SGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDNRLRHTLTGHSGKVLSAKFLLDNAR
IVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRTESIV
KELELFGRITALDLNPERTELLTCSRDDLLKIIDLRVSAVKQTFSAQGFKCGSDWTRVVF
SPDGNYVAAGSADGALYIWNVLTGKLERTLAKHHSSSINAVTWSPSGAHVVSVDKGNKAV
LWAEF
NT seq 1638 nt   +upstreamnt  +downstreamnt
atgcagagcagacatgagatcagccccggacatgatagcacatggaacgacgctcagctg
caggaactggcccagctgaagataaagcaccaagaggagctgactgagctgcacaagaaa
cgtggcgagctggcccagtctgtaattgatttaaacaaccaaatgcagcagaaggacaaa
gagatgcagatgaatgaagccaagattgcagagtatttgcaaaagatttctgaactggaa
acagagtgccaggaattgcgtagcaaactgcaagatcttgagcgggctaatcagacactg
aaagatgaatatgatgctctccagatcaccttcaatgccttggaggagaaactaaggaaa
actactgaggacaaccaggagctggtctcacgttggatggcagagaaagcgcaagaagcc
aatcgtttgaatgcagaaaatgaaaaggattcaaggagacgccaggccaggctgcagaag
gagctggcagaagctgccaaagaacccttgcctgttgaaccggatgatgacatcgaagtg
ctcgcagatgaaacctctgacacagctgaggaaacctctccagtgcgagctgtcagccgg
acgtccagtaagcgactctcccagccagctggaggccttctggactctatcagtaatatc
tttgggaggcgttctctgtcctcgttccctgccccccaggataatgcagagccacatcca
ggtgccagtaaagaagtgagagtgcccactactgccatttgtgtctttgatgcacatgat
ggggaggtgaatgcggtgcagttcagccctggctcccggttactagcaacaggaggcatg
gaccggagggttaagctttgggaagtcttgggagataggtgtgagcccaaaggttccctc
tctggcagtaacgctgggattacaagcatagaatttgatagtgctggttcttacctctta
gctgcttcaaatgactttgccagcagaatctggacagttgatgacaatcgattacggcac
accctcacaggtcacagtggtaaagttctgtcagccaagttcctgctggacaatgcacgt
attgtttcgggaagtcatgaccggaccctcaagctctgggatctccgcagcaaagtttgt
ataaaaacagtatttgcaggatctagctgcaatgacatcgtgtgtactgagcagtgtgta
atgagtggacattttgataagaaaattcgtttctgggacatcaggactgaaagcatagta
aaagaactggagttgtttggaagaatcacagctctggacctgaaccccgagcgaacagag
cttctgacctgttcccgtgatgatctgctcaagatcattgacctgcgggtcagtgctgtc
aaacagaccttcagtgcccaaggattcaaatgcggctctgactggacaagagttgtgttc
agccctgatggtaactatgtggctgctggctcagctgatggggccctctacatttggaat
gtgcttactgggaaattggagaggacgcttgcaaagcatcacagttcttctatcaatgca
gtcacgtggtcaccatcgggtgcccacgtggtcagtgtggacaaaggaaacaaggctgtg
ctgtgggctgagttctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (7)   
   UniProt (1)   
   RefSeq(pep) (6)   
DNA sequence (6)   
   RefSeq(nuc) (6)   
Protein domain (20)   
   Pfam (20)   
All databases (50)   

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