KEGG   Geospiza fortis (medium ground-finch): 102044056
Entry
102044056         CDS       T03755                                 
Symbol
RPAP1
Name
(RefSeq) RNA polymerase II associated protein 1
  KO
K20826  RNA polymerase II-associated protein 1
Organism
gfr  Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:gfr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gfr03021]
    102044056 (RPAP1)
Transcription machinery [BR:gfr03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Others
     102044056 (RPAP1)
SSDB
Motif
Pfam: RPAP1_C RPAP1_N
Other DBs
NCBI-GeneID: 102044056
NCBI-ProteinID: XP_005419469
UniProt: A0A6I9HEK2
Position
Un
AA seq 1434 aa
MLSRPKPGESEADLLRFQNQFLAARASPAVKIVKKADKRKGKEGSTDAERPPLQDSKDVV
MLDGFPDTLPALTPAPPKKSKIKSASVHFEDEDPEERLESHDRHITAVFSKIIERDTSAV
AVTMPVPTGDPFPRTFHRSEIKSEVQLGSGKKSIFAQKMAAKRAAEKSATAPSAAECVEV
RSAAPDALDPVGSVGEALLPGSRGDKDDDFLTSQRPCLITGEGLGSQKSEQEAQAIHKEN
LEKLQSMSEEEILQEQARLLAQLDPSLVAFLKSQRGNNEGQKKELKMELNRPEEFVESLP
VAQHGVRSSLSMQESGLEEHVRKEENTKVEIMDDDLPVKPRKEWIHMDNVEFEKLEWMKD
LPSPRQKKTKKGMQARFSLKGELIPADADLPTHLGLHHHGEEAERAGYSLQELFHLSRSQ
VTQQRTLALQVLGRIVQRARAGEFASSLKGSILRLLLDAGFLFLLRFSLDDVVENVVAAS
VGALRALLVSLDDEKYLDWTFSWYQGMAAFPFVPNNEEEEEEEEEDLNGTEKSQNKKLKD
ENKPDPDVARYDVVKGLLKTRIQHRLRYILEVVRPVPSVVQDILHILTHMARHSSEACSQ
LLDCPRLIETIVREFLPTQWDPKVAEPGFLLTSLHGVACASAMKFIRVLASGGRNATARL
LGKFELKSRLSRFVAEEPVDVPLPREEATRLSTEAFRLWAVAAGYGQACDLYSDLYPVLV
RILQSLPELLSGKSPVVELSVQRAAAVVTLLTHVTQTAGYTAELQAKLSSNNSEDSEPIP
PPPVAWSQVSGLQPFLETSLKKILQQISQTETWQTIQPLTTACVIFLGVYYSAYSQQPSV
NPVDCLEELERLTSEVLQPLLSQPAIDSMWDLLRPCSALCNPLSCSPAPESVSSIASLSC
TGGKPPLSLVGSKSPFPFLTALLFLINNVTHIHKGLTSKYSSVLGFRGLKDYLHQSWQTG
PPSVTPSSAWILRHEYHLQYFVLALARRMAGTCPDYTQHASLHHCVAMALLSRLLPGSEH
LAHEVLLDLAFNPKFLPEGKAGGPEAADFSDILHLGTSAKLAQPSSAAAFLPRVTRGALL
RESYQNLPSIRSCYLSHFVHLQPTLMRSQASYQGQNYLIQSMLLPEVKGPILPSDWPFFP
LISLYNKVTNAETRGAILNSLPLDLINTVTWNLQWVLLLETWRSKILQSMPTAAKLARLM
CVFLTSNDLFLEAPIHCYTAALLSVYCQPKVLDSLNLDAPLPGLASFHDLYISLLEQFEG
VSFGDPLFGVFVLLPLQKRFSVHLRLSVFGEHTNILRALGVPLQQFPVPLERYTSPPEDN
LNLLRLYFRTLVTGALHHTWCPVLYVVAIAHVNSFIFSQESTTQETDAARKSMLRKTWLL
VDENLKKHLLYYRLVNAESPLGFDLYEQLPPMRLRYLQIVTQKEITENVPTLDS
NT seq 4305 nt   +upstreamnt  +downstreamnt
atgctgtcgagaccaaagcctggggagtccgaggcagacctgctgcgctttcagaaccag
ttcctggcagccagagcttcacctgcagtgaagattgtgaagaaagcagacaagaggaaa
gggaaggaagggagcacagatgctgagagacccccgctccaggacagcaaggatgtagtc
atgttggatggttttcctgatactctcccagctctcactccagctcctccaaaaaagtcc
aagatcaaaagtgctagtgtccactttgaggatgaagatccagaggaaagattggagagt
catgatcgacacattacagcagtcttcagcaaaattattgaacgagataccagtgcagta
gcagtgaccatgccagtgcccacgggagacccattcccaaggacatttcaccgctctgag
ataaaaagtgaggtgcagctgggatctggaaaaaaaagcatctttgcacagaagatggca
gcaaaaagagctgctgaaaagtcagcgacggctccctctgctgccgagtgcgtggaagta
cgatcagctgctccggatgccttggatcctgtgggatccgtgggcgaggcgcttctcccc
ggcagcaggggtgataaagatgatgactttttgacctctcagcgtccttgtctcataacg
ggagagggtcttggaagccaaaagagtgagcaggaagctcaagctattcacaaagagaac
ttggagaagctgcagtcaatgtctgaggaggagatcctgcaggagcaggcgaggcttctg
gctcagctggatcccagtttagttgctttcttgaaatcacaacgtggtaacaatgaaggc
cagaaaaaggaattaaaaatggaactaaacagaccggaggagtttgtggaatctctgcct
gtggctcagcatggtgtaagatcatctctttccatgcaggagtcaggtctggaagaacat
gtaaggaaggaagaaaatacaaaggtagaaatcatggatgatgatctgcctgtgaagccc
aggaaggagtggattcacatggacaatgtagagtttgagaagctggaatggatgaaagat
ttgccctcacctcggcagaagaaaaccaaaaagggaatgcaagctcgattcagtttaaag
ggagaattgattcctgcagatgctgatttgccaacacatctaggcttgcaccaccatgga
gaagaggcagagagagctggttattctctgcaagagctctttcatctgtctcgcagccaa
gttacacaacagaggacactggctctacaggtcttaggtcgtattgttcaaagggccagg
gctggagagtttgcttcctcgttgaagggcagcattctgcgtctgctgcttgatgctggc
tttctcttcttgctgcgcttctcgctggatgatgtagtggaaaatgtcgtggcagcatcc
gttggtgctctccgggctctgctggtatcacttgatgatgagaaatatctcgattggact
ttctcatggtaccaagggatggctgcatttccctttgtccctaacaatgaggaggaagaa
gaggaggaagaggaagacttaaatggaacagagaaatctcaaaataaaaaattaaaggat
gaaaacaagccagacccagatgtggcccgatatgatgttgtaaagggacttttgaagaca
aggatccagcaccggctgaggtacatcctagaggtggtgcgacctgttccatcagtagtt
caggatatactgcacatcctcacccatatggcaaggcactcctctgaggcatgcagccag
ctgcttgactgtcctcgattgattgagaccattgtcagggaatttctccctactcagtgg
gatcccaaagtggctgaaccagggtttttacttaccagtctccacggagttgcttgtgcc
agtgctatgaagttcatcagggtcttggcatctggaggccgaaatgcaacagccaggctg
cttggcaaatttgagctgaagagtcggttgagtcgttttgtcgctgaagagcctgtggat
gtgcccctgccgagggaggaagccacgcggctgagcaccgaagccttccggctgtgggcg
gtggctgccggctacgggcaggcctgcgacctctacagtgatctctaccctgtactggtg
aggatactgcagtccctgccggagttgctcagtgggaagagccctgtggttgagttgtct
gtgcagcgagctgcagcagtggttactctgttgacacatgtgacacaaacagcagggtac
actgccgagctgcaagccaagttgagcagcaataactcagaagatagcgaaccgatccca
cctcctccagtagcatggagtcaagtgtcaggcttacagcccttccttgagacaagtctg
aaaaaaatccttcagcagatatcccagacagaaacgtggcaaactatccagcctctgacc
acagcttgtgtgatcttcttgggagtttattacagtgcttacagccaacagccatcagtc
aatccagttgactgcttagaggaactagaacgtttgacatcagaggtgctgcagcccctt
ctcagccagccagccatagacagcatgtgggacttgctcaggccatgttctgctttgtgc
aaccctctatcctgttccccagcaccggaatctgtcagcagcattgcatctctgagctgc
actggaggcaaacctcctttgagccttgttggctccaagtcacctttccccttcctcact
gccctcttatttctcatcaataacgtcactcacattcacaagggcctgaccagcaagtac
agctctgtgctgggcttcagaggcttgaaggattatctgcatcaaagctggcagactgga
cctccctctgtgactccctcatctgcatggatcctgcgccatgaatatcacctgcagtac
tttgtgttagcgttggctcggagaatggcaggcacttgtccggattacacccagcatgcc
tcactccatcactgtgttgccatggcattgctaagccgtctgttgccagggagcgagcat
ctggctcacgaggtcctgctggatcttgcctttaatccaaagtttcttcctgaagggaaa
gctggtgggccagaagcagctgacttctctgatattctgcatctgggcaccagtgccaaa
ctggcacagcctagctctgcagcagcatttcttccaagggttactcgtggtgccctgctg
agagaatcataccagaatctgccttccattcgttcctgctacctttcccactttgtccac
ttgcagcccacccttatgcgttctcaggcgtcctaccaagggcagaattacctcatccag
tcaatgctgcttcctgaggtcaaagggcccatcctgccttcagactggccattctttcca
cttatcagcctctacaacaaagtgactaatgcagagacacgtggggccatactgaactct
ctcccacttgatctcatcaacactgtgacctggaacctgcagtgggtcttgttgctggaa
acctggcgttctaaaatcctccagagcatgccaactgctgccaaacttgcacgacttatg
tgtgtcttcctcactagcaatgacctctttctagaagcaccaattcactgctacacagct
gcccttctctctgtgtattgccaacccaaggtcctggactccctgaacctggatgctcct
ctccctggtttggcatccttccatgatctctatataagtctcctggagcaatttgagggt
gtctcctttggagatccactctttggagtctttgttcttctacctctacagaagcgtttc
agtgttcatctgcgtctctctgtttttggggagcacacaaatatcctgcgggcgctggga
gtgccattacagcagtttcctgtgcctcttgagcgctacacttcccctcctgaggataac
ctgaacctcctgcgactctacttccgaacgctagtcactggtgcgctgcaccacacctgg
tgccctgttctgtacgtggtggccatagctcatgtgaacagttttattttctcccaagaa
agcacaacacaggagacagatgctgctcggaaaagcatgctgcggaagacgtggctgttg
gtggatgagaacttgaaaaagcacctgctgtactacagactggtgaatgcagagagtcct
ttgggatttgacctttatgagcagctccctcccatgcgactgaggtacctgcagatagtg
acacagaaagaaattacagagaatgtgccaacactagactcatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (26)   

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