KEGG   Geospiza fortis (medium ground-finch): 106631996
Entry
106631996         CDS       T03755                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like
  KO
K03129  transcription initiation factor TFIID subunit 4
Organism
gfr  Geospiza fortis (medium ground-finch)
Pathway
gfr03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:gfr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    106631996
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gfr03021]
    106631996
   03036 Chromosome and associated proteins [BR:gfr03036]
    106631996
Transcription machinery [BR:gfr03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     106631996
   Coactivators
    SAGA/TFTC/STAGA complex
     106631996
Chromosome and associated proteins [BR:gfr03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    TFTC complex
     106631996
SSDB
Motif
Pfam: TAF4 TAFH
Other DBs
NCBI-GeneID: 106631996
NCBI-ProteinID: XP_014165581
Position
Un
AA seq 700 aa
MPREQRAGAAALAMQRALVLFSKSSETASPLGNCITAAIPVWLGQQLWIPIVAPQLIVRP
PPQTTIQLPPGFTIPPGMVLVRTDAGQLVMVPQQALAQAQMQAQVQTQGQGPANMSPRLS
VPTTGPVFRLSTAQPTSVGTSSVRLGLPVQAKVVPSTAVSVATTSAPNLFKTTVASGAAA
SQQPAVLSSAQSQGSGSGQPPGQPRPGSTVVSQEMQENVKKCKNFLATLIKLASHNSPSP
ETSRNVKALVQDLLDAKIDPEEFTGRLQTELKSSPQPYLVPFLKKSLPALRQSLLNSQHL
VLQGQPSQQSLQQTKLSAVIPQSASGIPSVVTTQTIGIRQPNNICTVSVSNTVQPPQVKV
VQSNQSSQLQIIQSTSAQTVKRTPACQTTHIRMPVVITQTIRPQGTVGKAPTIQASKSPG
GFGVQVSANQKNKLNDPGGGSFRDDDDINDVASMAGVNLNEESARIMATNSDLVGTQMQS
CKDEPFLAAIPLHKRILETAKKLGITDVPAEVVTFISHATQSRLRTVIEKVTVITQHRME
SYKDDEWYEQATDVRSQLKFFEQLERLEKQRKDEQEREILLKAAKSRSRQEDPEQARLKQ
KAKEMQQQELAQMRQRDANLTALAAIGPRKKRKLDAPGLLTIGGEGVGLCGGSQAGLGTG
SPRQYPRQKITRVNLRDFIFYMEQEREMSRSLLLYRALLK
NT seq 2103 nt   +upstreamnt  +downstreamnt
atgccgagggagcagcgcgccggggcagctgctctggcaatgcaaagagccttagttttg
ttttccaaatcttctgaaacagcgtccccgttaggaaattgtatcactgcagccatcccg
gtctggctggggcagcagctgtggatcccgatcgtggccccgcagctgatcgtgcggccg
ccgccgcagaccaccatccagctgccgcccggcttcaccatcccgcccgggatggtcctg
gtgcgcacggacgccgggcagctcgtgatggtgccccagcaggctctggcccaggctcag
atgcaggcccaggtgcagacacagggacagggtcctgccaacatgtcacccaggctttct
gtgcccactactggccccgtttttcgcctgtcaacagctcagccaacgtccgtgggcacc
tccagtgtccgcctggggctcccggtgcaggccaaggtggtgccatcaacagcggtatca
gtagctacgacaagcgctccaaatctattcaagacgacggtggcaagtggagctgcagcc
tcccagcagcctgcagtgctcagcagtgcccagagccagggctcggggtcagggcagccc
ccagggcagccgcggccgggcagcactgtggtgtcacaggaaatgcaagagaatgtgaaa
aaatgtaaaaactttttagctacccttataaaacttgcttctcataattcaccatctcct
gaaacgtcccgcaatgtgaaagctctggttcaagatttgttggatgcaaagattgatcca
gaagaatttacaggccgccttcaaacagaactcaaatcatctcctcagccatatcttgta
cctttccttaagaaaagtctacctgcactgagacaatctttactgaacagtcagcatttg
gttttgcaaggccagccgtctcagcagtccctccaacagaccaagctctctgcagtgata
cctcagtctgcctcgggaatcccctctgttgtcaccacacagacaataggaataaggcaa
ccaaacaacatttgcacagtctctgtatcaaatacagtgcagcctcctcaggttaaggtg
gtacagtcaaatcagagttctcagctgcagattatccagtcaacatctgctcaaactgtg
aaacgaacccctgcttgccagactacccacattaggatgccagtggtaataactcagacc
attagaccacaaggcacagtagggaaggcaccaacaatacaagccagtaaaagtcctggg
ggctttggtgttcaggtctctgcaaatcagaaaaacaagctgaatgaccctggaggtggt
tctttcagagatgatgatgacatcaatgatgttgcctctatggctggtgttaaccttaat
gaagaaagtgcccgaattatggccaccaactctgacttggttggaacccagatgcagtcc
tgtaaagacgaaccctttcttgctgctatacctctccataaacgcatacttgaaacggct
aaaaaactaggaattactgatgtgccagctgaggtggttacttttatttcccatgcaaca
cagagcagattaaggacagtgatagagaaggtgacagtgataacccagcaccggatggag
tcgtacaaagatgatgagtggtacgagcaagccacagatgtccgatcccagctgaagttc
tttgagcagttggagcgtttggaaaagcaaaggaaagatgaacaagagagggaaattttg
ctgaaggctgccaagagtcgctcaaggcaagaagacccagagcaagctagactgaaacaa
aaagcaaaggagatgcagcagcaggagctggcccagatgaggcagagggatgccaacctg
acggcgctggcagccatcggcccccgcaagaaacggaagctggatgctcctgggctgctc
accataggaggagagggcgtggggctgtgcgggggcagccaggcggggctgggcacgggc
tccccccggcagtacccccggcagaaaatcactcgagtcaacctcagggacttcatcttc
tacatggaacaggagcgggaaatgagccgttcgctcctgctctaccgagctctgcttaaa
taa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (23)   

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