KEGG   Gallus gallus (chicken): 395601
Entry
395601            CDS       T01006                                 
Symbol
SIX5
Name
(RefSeq) homeobox protein SIX4 isoform X1
  KO
K15615  homeobox protein SIX4
Organism
gga  Gallus gallus (chicken)
Brite
KEGG Orthology (KO) [BR:gga00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:gga03000]
    395601 (SIX5)
Transcription factors [BR:gga03000]
 Eukaryotic type
  Helix-turn-helix
   Homeo domain SINE
    395601 (SIX5)
SSDB
Motif
Pfam: SIX1_SD Homeodomain Homeobox_KN HTH_TSHZ3
Other DBs
NCBI-GeneID: 395601
NCBI-ProteinID: XP_003641490
CGNC: 49394
Ensembl: ENSGALG00000017389
Position
5:53885483..53896819
AA seq 776 aa
MSSASPADEITIKQENVMEILSDAGKVPPDGAAALSPAPPPPPAAAPFPMEHGAAAGEEG
SAEPVLLHTELLARNHHAAAASPSSSSSSSSSSSSSQPPLAFSPDHVACVCEALQQGGNL
DRLARFLWSLPPSDLLRGNESLMKARALVAFHQGIYAELYSILESHNFDSSNHPLLQELW
YKARYTEAERARGKPLGAVDKYRLRRKYPLPRTIWDGEETVYCFKEKSRNALKELYKQNR
YPSPAEKRNLAKITGLSLTQVSNWFKNRRQRDRNPSETQSKSESDGNPSTEDESSKGQED
LSPHPLSSSSDGVTSLSLPSHMEPVYMQQLGNTKIALSSSGVLLNGNLVPASSSPVFLNG
SSFLQGPNGVILNGLSVGASQPVTLNSPKTTSSAVSNGVSITDIMSSSSEDVKDFKLLQA
SVPNTAADTFSPSNIPVSFSGLIPSSEVKRESTQTVASQDGGSVVTFTAPVQINQYGIVQ
IPNSGTNGQLLNGSIGFSSLQLPPVSVAASQDNVSVNSSTSDGGTFTSDSSTVQQGKVFF
SPLAPSAVVYTVPNSGQAVGSVKQEGLERSLVFSQLMPVGQNTQLNVNMSSENISSGGLQ
SLASSLVNVTPSHNFSLTPPTLLNAAELSSGISESQSMSSPVTSTSTVISISNTNYATLQ
NCSLITSQDLLSISTAQPALGEIVFTTGDRVSHPSAQLHQDFVREHRLVLQAVPDIKENF
LPNSESKSTGSLMMLDSKSKYVMSNMVDTVCEELDTDKKELAKLQTVQMDEDMQDL
NT seq 2331 nt   +upstreamnt  +downstreamnt
atgtcttctgcctcccccgcggacgagatcacgatcaagcaggaaaatgtgatggaaatc
ctctccgacgccggcaaggtgcccccggacggagcggccgcgctgagccccgcgccgccg
cccccccccgccgccgccccgttccccatggagcacggagccgccgccggggaggagggc
agcgccgagcccgtcctgctccacacggaacttttggcccggaaccaccacgccgccgcc
gcctctccctcctcctcctcctcgtcgtcctcttcgtcgtcctcctcgcagccccccctg
gctttctccccggaccacgtcgcgtgtgtgtgcgaggcgctgcagcaggggggcaacctg
gaccgcctggcccggttcctgtggtctttgcccccgagcgatctgctacgtggcaacgag
agcctgatgaaagcccgggcgctggtggctttccaccagggcatctacgccgagctctac
agcatcctggagagccacaacttcgactcgtccaaccacccgctgctgcaggagctgtgg
tacaaagctcgctacaccgaggcggagcgagcccggggcaaacccctgggggcggtggac
aagtaccggctgcggaggaaataccccctgccccgcaccatctgggacggcgaggagacg
gtgtactgcttcaaggagaagtcccgcaacgccctcaaggagctctacaagcagaaccgc
tacccctcgccggccgagaaacgcaacctggccaagatcaccgggctgtccctcacgcag
gtcagcaactggttcaagaaccgccgccagcgggaccgcaacccgtccgagacgcagtcc
aaaagcgaatcagatggcaaccccagcacggaggatgagtccagtaaggggcaggaggat
ttatccccacatccgctctccagctcgtccgacggagtcaccagcctcagccttcccagc
cacatggagcccgtctacatgcagcagcttggaaacactaaaatagccttgagctcatct
ggtgtcctgttgaatgggaacctcgtgcccgccagtagctctcccgtctttctcaatggt
agctcttttcttcagggacccaacggcgtcattctcaatggactcagcgtgggggcttcg
cagccggtaactttaaattcacccaaaaccacttcaagtgctgtgagcaacggggtgtcc
atcactgacatcatgtcgtcttcttcagaagatgtaaaggacttcaaactcctccaggct
tcggtccccaacacggcagcagacacgttcagccccagcaacataccggtctccttctcg
ggattgataccgagctcagaagtgaaaagggaaagcacacaaactgttgcttcccaagat
ggaggctctgtagttacttttactgctcctgtccaaataaaccagtatggcattgtccag
atccccaattcaggaacaaatggccagttgctgaacggaagcatcggtttctcttctctg
cagctgcctcctgtttctgtggcagcttctcaagataacgtgtcagtaaattctagcaca
tcagatggaggaactttcacaagcgactcttcgacggtgcaacaaggaaaggttttcttc
agccccctcgccccgagcgccgtcgtttatacagttcccaattcaggtcaggcggtggga
tctgtcaagcaggaaggactggaaagaagccttgtgttttctcagttgatgccagttggt
cagaacacgcaactcaatgtaaacatgtcttctgaaaatatatccagcggaggactccag
tccctggcctcctcgctagtgaatgtaacgccctcacataatttctccctcacgccaccg
actcttttaaatgctgcagaactgagctctggtatctccgagagccagtccatgtcatcg
cccgtaaccagtacctctaccgtgatatctatcagcaacactaactatgcaactcttcag
aactgctccctcattaccagtcaagatctgttgtccatctctacagcacagcccgcgctt
ggagaaatcgtttttacgaccggagaccgtgtgagccacccatctgcacagctacaccag
gattttgtccgagagcacaggttggttctgcaagctgtaccagacatcaaagagaatttc
ttgcctaattcggaaagcaaatcaaccggcagtttaatgatgctggattcgaaatccaag
tatgttatgagtaacatggttgacacggtttgtgaagagctggacacggacaaaaaggaa
cttgccaaactgcagacagttcagatggatgaagatatgcaagacttataa

  All links  
Gene (19)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   CGNC (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (12)   
   RefSeq(nuc) (4)   
   GenBank (4)   
   EMBL (4)   
Protein domain (4)   
   Pfam (4)   
All databases (39)   

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