KEGG   Gallus gallus (chicken): 415780
Entry
415780            CDS       T01006                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X2
  KO
K03129  transcription initiation factor TFIID subunit 4
Organism
gga  Gallus gallus (chicken)
Pathway
gga03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:gga00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    415780
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gga03021]
    415780
   03036 Chromosome and associated proteins [BR:gga03036]
    415780
Transcription machinery [BR:gga03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     415780
   Coactivators
    SAGA/TFTC/STAGA complex
     415780
Chromosome and associated proteins [BR:gga03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    TFTC complex
     415780
SSDB
Motif
Pfam: TAF4 TAFH
Other DBs
NCBI-GeneID: 415780
NCBI-ProteinID: XP_025010141
CGNC: 50073
Position
11:complement(10736118..10872724)
AA seq 1023 aa
MAAGASDPLEEMLLFSEEVDEKAVSDLVGSLESQLAGGRGSVEAPQPRTSAPSQQQQPQQ
QQQQQRQGSLAGGSSPVRQQQGHPAPPPATGAEEAAAGRPGAAESRAPAPGPLPSPSPPA
AAAAVAAAAAAGRGVSVNSSSVQQSHGAALLGGSPAAPAPPQPAAPPPAPPVNNHVAAGT
GSRDAGSPSPGRSPPAAEPPPRNEAAEGSGAEGGGRAAATEGADAAEPAPLPGEAAPNGE
GARGRAAAVPPVSGRQSPAGREGGAAQPKPAHGPQPAVNALGNSASPAPAATPPGPGSAA
KPAGVAKPGAALPAASQALSPRPALGAAPRLVAPQLIVRPPQQTTIQLPPGFTIPPGMVL
VRTDAGQLVMVPQQALAQAQMQAQVQTQGQGPASISPRLSVPTSGPVFRLTTAQQPTSVA
TSTVRLGLPVQAKVVQSTATPVSATAAATLPGGSILSHTTVSVATTNAQNIFKTTVSTGT
PTSQQPAVITGAQTQAAAQNQSQPRLPLPPHTTAQVPAQPQVIPSSPVPGTTVVSQEMQE
NVKKCKNFLATLIKLASHNSPSPETSRNVKALVQDLLDAKIDPEEFTGRLQSELKSSPQP
YLVPFLKKSLPALRQSLLNSQHSVLQGQPSQQSLQQTKLSQVIPQSASGNISSIVTTQTI
GIRQPNNICTVSVSNTVQPPQVKVVQSNQSSQLIIQSTSAQTVKRNPACQTTQIRMPVVI
TQTIRPQGTVGKAPTIQASKSPGGFGVQVSANQKNKLNDPGGGSFRDDDDINDVTSMAGV
NLNEESARIMATNSDLVGTQIQSCKDEPFLAAIPLHKRILEMAKKLGITDVPAEVVTFIS
HATQSRLRTMIEKVTVITQHRMESYKDDEWYEQATDVRSQLKFFEQLERLEKQRKDEQER
EILLKAAKSRSRQEDPEQARLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKLDSP
GLLTIGGEGLSMSGGGQAGLGTPSSRQYARQKITRVNLRDFIFYMEQERETSRSLLLYRA
LLK
NT seq 3072 nt   +upstreamnt  +downstreamnt
atggcggcgggcgcctcggaccccctggaagagatgctgctcttctccgaggaggtggac
gagaaggcggtcagcgacctggtgggctccctggaatcgcagctggccggcggccggggc
tcggtcgaggcgccccagcccaggacctccgccccgtcccagcagcagcagccgcagcag
cagcagcagcagcagcgccagggcagcctggcggggggcagcagccccgtccggcagcag
caggggcaccccgcgcccccccccgctaccggggcggaggaggctgcggcgggccgtccc
ggagccgcggagagccgagcccccgccccggggccgctcccgtccccgtcccccccggcg
gcagcggcggcggtagcggcggcggcggcggcagggcggggagtgagtgtaaacagtagt
agtgtgcagcaatcacatggagcggctctgctcggcggcagccccgccgccccggccccg
ccgcagcccgccgcacccccgcccgccccgcctgtcaacaaccatgtggccgccggcacc
ggctcccgggacgcgggcagccccagccccggccgcagcccgcccgccgcagagccgccg
ccgcgcaacgaggccgcggaggggagcggggcggagggcggcgggcgggcggcggcgacg
gagggtgccgacgccgccgagcccgcgccgctccccggcgaggcggcgcccaacggggag
ggcgccaggggtcgagcggcggcggtgccgccggtcagcggccggcagagcccggccggc
agggaaggcggcgcggcgcagcccaagcccgcgcacggcccgcagcccgcagtaaacgca
ctcggcaactccgccagccccgcgcccgccgccaccccgccgggaccgggctcggccgcc
aaacccgcgggcgtcgccaagccgggcgctgccctccccgccgcttctcaggcgctgtcg
ccgcggcccgcgctgggtgccgccccgaggctggtggccccgcagctgatcgtcaggccg
ccgcagcagaccaccatccagctgccgccgggcttcaccatcccgcccggtatggtcttg
gtgcgcacggatgctggacaacttgtgatggtgcctcagcaggctctagcccaggcgcaa
atgcaggctcaagtacagacacagggacaaggtcctgccagcatttcacctcgactttca
gtgcccacaagcggcccagtttttcgcctaacaacagctcagcaaccaacttctgtagcc
acatctactgtccgccttggacttccagtgcaagccaaagttgttcagtcaactgcaaca
cctgttagtgctacagctgctgcgactctgccaggaggctctattctgtcacataccaca
gtgtcagtagctacaacaaatgctcaaaatatattcaagactacagtatcaacgggaaca
ccaacatctcaacagcctgcagtaattactggtgcacaaactcaagctgcagcacaaaac
cagagtcagcctcggctcccacttccacctcatacaacagcacaagtgccagcacagccc
caagtcataccaagctctcctgtacctggaactacagttgtatcacaggaaatgcaagaa
aatgtgaaaaaatgcaaaaattttttagctactcttataaagcttgcttctcataattca
ccttctccagaaacgtcccgcaatgtgaaagctctggttcaggatttgttggatgcaaag
attgatccagaagaatttacaggccgccttcaatcagaacttaaatcatctcctcagcca
tatcttgtacctttccttaagaaaagtctacctgcattgagacaatcattactgaatagt
caacattcagttttgcaaggacaaccgtctcagcagtcgcttcaacaaaccaagctatca
caagttatacctcaatctgcctctggaaatatttcctccattgtcacaacgcagacaata
ggaataaggcaaccaaacaacatttgcacagtctctgtatcaaatacagtgcagcctcct
caggttaaggtggtacagtcaaatcagagttctcaactgattatccagtcaacatctgct
caaactgtgaaacgaaaccctgcttgccagactacccagattaggatgccagtggtaata
actcagaccattagaccacaaggcacagtagggaaggcaccaacaatacaagccagcaaa
agtcctgggggctttggtgttcaggtctctgcaaatcagaaaaacaagctgaatgaccct
ggaggtggttctttcagagatgatgatgacatcaatgatgttacctctatggctggtgtt
aatctaaatgaagaaagtgcccgaattatggctaccaactctgacttggttggaacccag
atacagtcgtgtaaagatgaaccctttcttgctgctatacctctacataaacgcatactt
gaaatggctaaaaaattaggaattactgatgtgccagctgaggtggttacttttatttcc
catgcaacacaaagcagattaagaacaatgatagaaaaagtaacagtgataacccagcac
cgcatggaatcatacaaagatgatgagtggtatgaacaagctacagatgtccgatcacaa
ttaaagttttttgaacagttggaacgtttagaaaagcaaaggaaagatgagcaagagagg
gaaatcttgctaaaggctgccaagagtcgctcaaggcaagaggacccagagcaagctaga
ctgaaacaaaaagcaaaggagatgcagcaacaagaacttgcacaaatgaggcagagagat
gccaatctaactgcattggcagctatcggtccccggaagaaacggaaacttgattcacct
ggactgcttaccataggaggagagggcctcagtatgtccggtggaggtcaggctggcttg
gggactccttcatccaggcagtatgcacgacagaaaataacgcgtgtaaacctcagggac
ttcatcttctacatggaacaggaaagagaaacgagccgttctctcctgctctatcgagct
ctgcttaaataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (72)   
   KEGG ORTHOLOGY (1)   
   RefGene (67)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   CGNC (1)   
   OC (1)   
Protein sequence (6)   
   RefSeq(pep) (6)   
DNA sequence (12)   
   RefSeq(nuc) (10)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (97)   

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