KEGG   Gallus gallus (chicken): 416337
Entry
416337            CDS       T01006                                 
Symbol
AFF4
Name
(RefSeq) AF4/FMR2 family member 4 isoform X1
  KO
K15185  AF4/FMR2 family member 4
Organism
gga  Gallus gallus (chicken)
Pathway
gga03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:gga00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    416337 (AFF4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gga03021]
    416337 (AFF4)
Transcription machinery [BR:gga03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     416337 (AFF4)
SSDB
Motif
Pfam: AF-4 AFF4_CHD AF4_int
Other DBs
NCBI-GeneID: 416337
NCBI-ProteinID: XP_004945087
CGNC: 5383
Ensembl: ENSGALG00000030147
UniProt: A0A8V0YL30
Position
13:complement(17781193..17831665)
AA seq 1167 aa
MNREDRNVLRMKERERRNQEIQQGEEAFPPNSPLFAEPYKVTSKEDKLSSRIQSMLGNYD
EMDDLIGDRSLPKLVGIPKPTVPSTADEKSNQSFFGDQRHNASSHQSSKWTPVGPAPSTS
SQSQKRSSGLQSGHSGQRGGGNNTSSGGQRHDRDSYSSSSSRKKSQHGSEHSKSRSSSPG
KPPAVSSLSSSHSRSHGSDHHSKEHQRSKSPRDPDANWDSPSRVPSFSSGQHSNQSFPPS
LMSKSSSMLQKPTAYVRPMDGQESMEPKLSSEHYSSQTHSSGVNELKPSSKAHLTKLKIP
SQPLDASASGDVSCVDEILKEMTHSWPPPLTAIHTPCKTEPSKFPFPTKESQQSSFGTGE
QKRYNPSSKTSNGHQSKSCESNQTDMLKDDLKLSSSEDSDGEQDCDKTVPRSTPGSSSEP
SQHNSEGADNSRDDSSSHSGSESSSGSDSESESSSSDSEANEPSQSASPEPEPPPTNKWQ
LDNWLNKVNSHKVSPASSVDSNIPSSQGYKKEGRDQGTGSGYTDQSGSKDSISSTPGRDS
KPTQKGSESSRGRQKSPAQSDSSTQRRTVGKKQPKKAEKTSVEEPRGGLKIESETPVDMA
TNIPSNRHKAATKGSRKPNIKKEPKSSPRPTTEKKKYKASSKSAQKSREFIETDTSSSDS
DENESLPPSSQTPKYSESNRTPVKSSMEEDDSFFRQRMFSPMEEKELLSPLSDPDERYPL
IVKIDLSLLSRIPGKPYKDADVPKVEKKNVPEKHARESQKQPSDKSSTKGKRKHKQNEDE
NRASESKKTKLEEKAPSGHKTSSSRESLKPSAVKEKDLLPSPAAPVLQKDSKQEHGSRKR
TVSQSSSLKSSSNVSKDSSSGSKSSSSSKQKKMEGKGSGSAKETKEKILNNSSNCPPVSA
PSTESSKSRRAKLVFDDRTYSADHYLQEAKKLKHNADALSDRFEKAVYYLDAVVSFIECG
NALEKNAQESKSPFPMYSETVELIKYTMKLKNYLAPDATAADKRLAVLCLRCQSLLYLRL
FKLKKESALKYSKTLTEHLKNSYNNSQAPSPGMGSKPVGMPSPVSPKLSPGNSGNYSSGT
ANPSGSGSSVMIPQRIHQMAASYVQVTSNFLYATEIWDQAEQLSKEQKEFFAELDKAMGP
LVFNSSIMTDLVRYTRQGLHWLRLDAK
NT seq 3504 nt   +upstreamnt  +downstreamnt
atgaaccgtgaagaccgaaatgtgctgcgtatgaaagaaagggaaaggcgaaatcaagaa
atccagcagggtgaagaagcctttccgcccaactctcctctctttgctgaaccatacaaa
gttaccagcaaagaagacaaattatctagtcgcattcagagcatgcttggtaattatgat
gaaatggatgatcttataggagatagatcgctaccaaagcttgttggaattcccaaacct
actgtaccatcaacagcagatgaaaaatcaaaccaaagtttctttggtgatcagagacat
aatgctagttcccatcagagtagcaaatggactcctgtaggaccagcacctagcacttcc
tcacagtctcagaaacggtcctcgggtttacagagcggccacagcggtcagcgtggcggt
ggcaataacactagcagtggtggccagaggcacgaccgtgactcgtacagtagcagcagc
agtcgcaaaaaaagccagcatggatcagaacactccaaatcccgttcttccagccctggg
aaaccacctgctgtttcttcgttaagctccagccattcgagatctcatggaagtgatcat
cacagcaaagaacatcaacgctcaaagtctccccgggatccggatgccaactgggactct
ccttcgcgtgtaccctcattttcaagtggacagcactctaaccagtcttttccaccttcg
ctcatgtccaagtccagttcaatgttacagaaacccactgcttatgtaaggccaatggat
ggacaggaatccatggaaccaaagttatcttccgaacactacagtagtcagacccacagc
agcggtgtgaacgagctgaagcctagcagcaaggcacatctaaccaagctgaaaatacct
tctcaaccactcgatgcatcagcatctggtgatgtgagctgcgtggatgaaattctaaaa
gagatgacccattcttggcctcctccgctgactgctattcatacaccatgcaaaactgaa
ccatcaaaatttccttttccaacaaaggagtctcaacagtccagttttggcactggagaa
cagaaacgatataatccttcatcaaaaacatccaatggccatcagtccaaatcatgtgaa
tcgaaccagacagatatgttgaaagatgacttaaaacttagcagtagtgaagacagcgat
ggagagcaggactgtgataagacagtgccaaggagcacacctggaagtagttctgaacct
tcacagcataacagtgaaggagcagataattcaagggatgactcgagcagccacagtggg
tctgaaagcagttcaggatcagactctgaaagtgaaagcagttccagtgatagtgaagct
aatgaaccatcacagagtgcatcccctgagccagagccaccgccaacaaacaagtggcaa
ctggataactggttgaacaaagttaattcacataaagtgtcaccagcttcttccgtggac
agcaatatcccatcctcacaaggctacaaaaaagagggacgggatcagggaacaggaagt
gggtacactgatcaaagtggatccaaggactccatttcttcaacaccagggcgagattcc
aaacccacccaaaagggctcagagagcagtcgtggcaggcagaaatcacctgcccagagt
gacagctcaacacagaggaggactgtgggtaaaaagcagcccaagaaggcagaaaagaca
tctgttgaagagcctagaggaggtcttaaaatagaaagtgaaaccccagtagacatggca
acaaacataccttcgaacaggcataaggcagccactaaaggttccagaaaacctaatata
aagaaagagcccaaatcttcccctcggcctacaacagagaagaagaaatacaaggcttca
agcaaatctgcccagaaatccagggaattcatagaaacagatacctcatcttctgattca
gatgaaaatgaaagcctgcctccttcatcacaaacacccaaatactccgagagcaatagg
actcctgttaaatcttccatggaggaggatgacagcttttttcggcaaagaatgttctct
cctatggaagagaaagagcttctttcaccactcagcgatcctgatgaaaggtacccactt
attgtgaagattgacctgagcctcttatcaagaataccagggaagccttacaaggatgct
gatgtgcccaaagtggaaaagaagaatgtgccagagaagcatgcaagagaatcccagaag
cagccttctgataaaagttctacgaaaggcaaaaggaaacataaacagaatgaggatgaa
aacagagccagtgaaagcaagaaaacgaaactggaagaaaaagctccatcaggacacaag
acttctagcagcagggagtctttaaaaccaagtgctgttaaagagaaggatttactgcca
tctcctgctgccccagtccttcagaaggattccaaacaagagcacgggtcccggaagagg
acagtcagtcagtcgtcatccttgaagtccagcagcaatgttagtaaggacagcagcagt
ggcagtaaaagcagctcatcttctaaacagaagaagatggagggcaaaggttctggcagt
gctaaagaaacaaaggaaaagattctgaacaattcatcgaactgccctcctgtttctgct
ccatctacagagagctcaaaatcaagaagagcaaaacttgtttttgatgacaggacttac
tcagctgatcattatttacaggaagcaaagaagttaaaacataatgcagatgcattgtct
gacaggtttgagaaggctgtgtactacctagatgcagtagtgtcgttcattgagtgtggg
aatgcattggagaaaaatgctcaggaatccaagtccccgttccctatgtattcagaaact
gtggaattaatcaagtacactatgaaactgaagaattacttggcaccggatgctacggct
gcagacaaaaggctagcagtgctttgtcttcggtgccaatctctactatacctaaggctt
ttcaaactgaaaaaggaaagtgcattgaaatattctaaaactctgactgaacatctgaag
aattcctataataattctcaagcaccgtcacctggtatgggaagcaagcctgttggtatg
ccatctccagtctctccaaagctgtctccagggaattcaggaaattactcttctgggaca
gccaacccttcagggagtgggtcttcggtgatgatcccccagaggatccatcagatggca
gccagctatgtccaagttacatccaacttcctctatgccactgaaatttgggaccaagct
gaacagctgtctaaagaacagaaagagttctttgctgaactggataaagctatgggccct
ctggtttttaattcaagcatcatgacagacctagtgcgttacacccgtcagggactacac
tggttgcgcctggatgccaagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   CGNC (1)   
   OC (1)   
Protein sequence (15)   
   UniProt (1)   
   RefSeq(pep) (14)   
DNA sequence (18)   
   RefSeq(nuc) (14)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (61)   

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