KEGG   Gallus gallus (chicken): 416633
Entry
416633            CDS       T01006                                 
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator isoform X1
  KO
K08060  MHC class II transactivator [EC:2.7.11.1]
Organism
gga  Gallus gallus (chicken)
Pathway
gga05164  Influenza A
Brite
KEGG Orthology (KO) [BR:gga00001]
 09160 Human Diseases
  09172 Infectious disease: viral
   05164 Influenza A
    416633 (CIITA)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01001 Protein kinases [BR:gga01001]
    416633 (CIITA)
  09183 Protein families: signaling and cellular processes
   04054 Pattern recognition receptors [BR:gga04054]
    416633 (CIITA)
Enzymes [BR:gga01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.11  Protein-serine/threonine kinases
    2.7.11.1  non-specific serine/threonine protein kinase
     416633 (CIITA)
Protein kinases [BR:gga01001]
 Serine/threonine kinases: Other
  TAF1 family
   416633 (CIITA)
Pattern recognition receptors [BR:gga04054]
 Cytoplasmic pattern recognition receptors
  NOD-like receptors
   416633 (CIITA)
SSDB
Motif
Pfam: NACHT LRR_6 LRR_4 NLRC4_HD2 LRR_8 NB-ARC LRR_14 LRR_9 NPHP3_N RsgA_GTPase AAA_16 nSTAND3
Other DBs
NCBI-GeneID: 416633
NCBI-ProteinID: XP_004945373
CGNC: 50302
Ensembl: ENSGALG00000007171
Position
14:complement(9466518..9505133)
AA seq 1171 aa
MMPKKLSVNLHIQEAEIGSASLPQAAELSLTFAVRVSSSQFSGGQTFSICSSAPQDDNKI
QIMDSTSVSENGYLDLLLCDIDPMHLFAFSDPKSSGNEGEFFADPEIDTYNYEQFNNMDF
LCAVENDENEDELYLSSNAKDAYARIAELAEYVLKDPHEKQVEDEFAGNLILDEMALENT
EKFTDVKMQKCHKRTFSGSAENCSDASEPKYKKIVDAPAVSTGNGCFLTMSLNSHSSDCT
SLTHQHMSFSVPTINAPGSFVIPGSSLPLIPECLPVGMKDNRENVDFVDPAQQKINYFLG
NGTSNAIRYPELTSSTELMVSPSFQVNLNGLEMFKEVQVPEILSEESSRRPRSVEAFCTS
LMDYFRDVCKSVSVEREMSLDHMYIDGTLRQSQIETKPGKNSVKSVERDSVTYSQQEKEE
AVIERSQIFQMPGGKELETKVIVVLGKAGMGKSVLVQKICQDWSNGEFPQFEFVFWFDCK
QISLPEKWYSLKDLLLDFFVRPQEGSKEIFEYILQNSTKVLLVFDGLEGLHGHENSPHCS
ASQPNKDLCRVKELLSGLIQKKILNGCTLLLTARTKEKVCQYVSKVDKTIEIVGFSPWQR
ELYISKYFEGLPSCDNALNLIKEHEYLFSHCYSPVMCRFVCFLCETILEMGDQGLPSTLT
TLFLKFVQQKIMPTQTDVTDVTLAQNQENLATLACIAWYLGEKHLSAMKSDLLPSKEVKE
FALKNGFFLPFAFPKHSDTGEEEYGTMFSDFVIQNFLGALHLILTEGIKNKSLIKYLSFP
SKKKKPYNWLHFVPRFLAGLLFLQDDTYFCSLSNKGVKKSTKKQKMLLKYIKRLQIDNLC
PERLLELLHCIYETQNSYLLQHVALRLKPDLSFLGIVLTPPDVHVLSSTLKRSRKEFSLD
LQNSSIDTHGLKDLVGLKNVVSFRASLSDTIRLWKYLEQTKDYELLRVSTEKFVLDPFKA
KTMRDIIDLSDLVEMQEIIINRVQDDSGCSSYQIPAIKNLRKLEFALGPACGLQGFLKLV
EILAAFPSLQHLDLDALSENGIGDEGAKSLSEVFPTLTSLETLNLSQNKITDVGAEKLAT
ALPSLSSLTTLSLYNNSICDFGAENLAKVLPAMASLRVLDIQYNKITDVGAQQLTDSLRK
CPHIKNLVMWNPTIPYGVLEHLQQLDSRISV
NT seq 3516 nt   +upstreamnt  +downstreamnt
atgatgccaaaaaaactctctgtaaacctccatatccaagaagctgagattgggtctgcc
tctcttccccaagctgcagaactctcactgacgtttgctgtgagagtaagcagttcccag
ttttctggagggcagaccttcagcatatgctcttctgctccacaagatgacaacaagata
caaatcatggattcaacatctgtgtctgaaaatggctatcttgatttgctgctctgtgat
attgatccaatgcatctatttgcattctcagatcctaagtcatctggaaatgaaggtgaa
ttctttgcagatcctgaaattgatacctacaactatgaacaattcaataatatggatttc
ctgtgtgcagtggaaaatgatgaaaatgaggatgaattgtatctctcttccaatgccaaa
gatgcttatgctagaatagctgaattagcagaatatgtgctcaaggatcctcatgagaag
caggtggaagatgaatttgcagggaaccttattttggatgaaatggctcttgaaaacact
gagaaattcactgatgtaaagatgcagaaatgtcacaaaagaaccttttcaggctctgca
gagaattgctctgatgcttctgaacctaaatacaagaaaattgtggatgcccctgcagta
tcaacagggaatggatgtttccttacgatgtctctcaacagccattcatctgactgcacc
tcactaactcaccagcacatgtccttttctgttcccactatcaatgcaccgggaagtttt
gtaattcctgggtcttcactgcctttgattccagagtgtctgccagtaggcatgaaagac
aacagagagaatgtagactttgtggatcctgctcagcagaaaattaattattttcttgga
aatggcacatctaatgctataagatatccagaactgacttcctccactgaattaatggta
tccccaagttttcaagttaatttaaatggcttagaaatgttcaaagaagtccaagttcca
gaaattctttctgaagaatcttcaagaagaccaagatcagtggaagctttctgtacatca
cttatggattacttccgagacgtatgcaaatctgtgtctgtggagcgtgaaatgtctctt
gatcacatgtatattgatggtacgcttaggcaaagccaaattgaaaccaagcctgggaag
aacagtgtaaaatcagtggaaagagattcagtaacttacagtcagcaagagaaggaagag
gcagtaattgaaagaagccaaatatttcaaatgccaggaggtaaagagttagagactaaa
gtgattgtggtgctgggaaaagcaggaatgggcaaaagcgttcttgttcagaagatctgc
caggactggtccaatggagagtttcctcagtttgaatttgtcttttggtttgactgcaaa
caaataagcttgcctgagaagtggtacagcttgaaggatctacttcttgattttttcgta
agacctcaggagggaagcaaagagatcttcgagtacatacttcaaaattctactaaagtc
cttctggtttttgatggtttggaagggttgcatggccatgagaattctcctcactgctca
gccagccagcctaacaaagacctgtgccgcgtgaaggagctgctttcaggactcatccaa
aagaagatactcaatggctgtactttattacttacagcaagaacaaaagaaaaggtgtgc
cagtatgtgtccaaagtagataagactattgaaatagtaggattctccccttggcagaga
gaactgtacatatccaaatactttgaaggattaccctcgtgcgataatgcactgaattta
atcaaagagcatgaatacctcttcagtcattgttacagccctgttatgtgtagatttgtt
tgttttctctgtgagacaatacttgaaatgggagatcaaggccttccttcaactcttact
acactcttcctgaaatttgttcagcaaaaaataatgcctacacaaacagatgttacagat
gttacacttgctcaaaaccaagagaatcttgctacactagcctgtatagcctggtatctt
ggagaaaagcacctaagtgccatgaaaagtgatcttcttccttctaaagaagttaaagag
tttgctctgaaaaatggatttttcctgccatttgcattccccaaacattcagatacggga
gaagaggaatatgggaccatgttctctgattttgtcatccagaatttcttgggtgcactt
caccttatattaacagaaggcatcaagaacaaaagtctaataaagtacctctcttttcca
tccaaaaagaagaaaccttataactggctacatttcgtgcctcgatttttggctggattg
ttattcctccaggatgacacctacttctgctccctttcaaacaagggtgtaaaaaaatca
accaagaagcagaaaatgctcctgaaatatattaaaaggttgcaaatagacaacctctgt
ccagagaggttacttgagcttttgcactgtatttatgaaacacaaaacagttatctcttg
cagcatgtggccttacggctcaagccagacctgtcctttctgggcattgttcttacacca
cctgatgtccatgtactgtcctctactttaaaaaggtcaagaaaagaattttccttggat
ttgcaaaacagcagtattgacacacacgggctaaaagacttggttggcctgaagaatgtg
gtgtcattcagggcctccctcagtgatacaatcaggctatggaaatacttagaacagaca
aaagactatgaactgctgagagtgtcaacagaaaaatttgttcttgatccctttaaggca
aaaacaatgagagacatcattgacctttctgaccttgtagaaatgcaggagataataatc
aatcgtgtgcaagatgactctggttgcagcagctatcaaattcctgccataaaaaacttg
agaaaactagaatttgctctgggtccagcgtgtggccttcaaggattcctaaaactcgtg
gaaattcttgcagcatttccatcactgcagcatttagaccttgatgctctgagtgaaaat
ggcataggagatgaaggagcaaagagtctgtctgaagtctttccaacactgacatcactg
gaaacattaaacttgtcacagaataagataacagatgtgggtgcagagaaactggctaca
gctcttccctccttgtcttcattaacaacactaagcttatacaataatagcatttgtgat
tttggagcggaaaaccttgcaaaagtccttcctgcaatggcttctttaagagtgctagac
attcagtataacaaaataactgatgttggagcccaacagctgactgacagcctaagaaaa
tgtccccatataaaaaatttggtgatgtggaatcctacaattccatatggagttcttgaa
caccttcagcagctggactctaggatcagcgtgtag

  All links  
Gene (43)   
   RefGene (38)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   CGNC (1)   
   OC (1)   
Protein sequence (17)   
   RefSeq(pep) (17)   
DNA sequence (27)   
   RefSeq(nuc) (19)   
   GenBank (4)   
   EMBL (4)   
Protein domain (12)   
   Pfam (12)   
All databases (99)   

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