KEGG   Gallus gallus (chicken): 416844
Entry
416844            CDS       T01006                                 
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
gga  Gallus gallus (chicken)
Pathway
gga03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:gga00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    416844 (KDM2B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:gga03000]
    416844 (KDM2B)
   04121 Ubiquitin system [BR:gga04121]
    416844 (KDM2B)
   03036 Chromosome and associated proteins [BR:gga03036]
    416844 (KDM2B)
Enzymes [BR:gga01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     416844 (KDM2B)
Transcription factors [BR:gga03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    416844 (KDM2B)
Ubiquitin system [BR:gga04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     416844 (KDM2B)
Chromosome and associated proteins [BR:gga03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    416844 (KDM2B)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     416844 (KDM2B)
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like JHD F-box LRR_FBXL15 Cupin_8 JmjC LRR_4
Other DBs
NCBI-GeneID: 416844
NCBI-ProteinID: XP_004945610
CGNC: 3104
Position
15:complement(5771886..5876211)
AA seq 1289 aa
MKLSEKMKTEKDSGRRLRPIGRRRYDEHEDLSDVEEIVSVRSFNLEEKLKSKTYRGDFVH
SMDGKDFTFEYVQREALRVPLIFRNKDGLGIKMPDPDFTVRDVKLLVGSRRIVDVMDVNT
QKGVEMSMSQFVRYYETPEAQREKLYNVISLEFSHTKLENIVKRPNVVDLVDWVDNMWPQ
HLKERQTDATNAISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIP
PTLQNLELYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVF
GGNILHSFNVPMQLRIYEIEDRTRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQ
KESMLIDAKRKRSIDSYSSDSWLDMDEESCDAHIREEKDDSLDKNSKSLVDGSSSPNSTH
SEGKEGAGRKQKATVMRYLKRTLSNESDDSVKSTTPTDYPKTPTGSPATEVSTKWTHLTE
FELKGLKALVEKLESLPENKKCVPEGIEDPQALLEDMKNILKEHADDDQNLAISGVPVVS
WPKKTPKNRAVGRPKGKLGAASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCK
DMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSIC
NEIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKAYKQKRGPGFKYASNLPGSLL
KEQKMNRDNKEVTDAAKRKGDCEETPRRKSEEHSKKPQVDSILRRKSDEVHLRRKRKFEK
PQEPSMRKRRRSWKASDERTALLKPLRRLKQEPEDELPEAPPRSKDSDQSRSSSPTAGPS
TEGAEPRDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANENHQPIKSEPESEN
EEPKRALNNSERLHRFSKGLNGTPRELRHPLIPSLRSTPRGIARPPPSLSPPKCIQMERH
VIRPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRVCKTWNRWCCDKRL
WTKIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGLRDLLLSGCSW
IAVSALCSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGCNGCTLESMETLSSSSG
KEQFCGSCHIRPDISSGQIDNRSKLRNIVELRLAGLDITDASLRLIIRHMPLLSKLNLSY
CNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDQCLSYFKRCGNICQIDLRYCKQVT
KEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq 3870 nt   +upstreamnt  +downstreamnt
atgaaactctccgaaaaaatgaagacggagaaggactctggaagaagattgcggcccatt
ggcaggaggaggtacgatgagcacgaggacctctcggacgtggaggaaatcgtcagcgtc
aggagtttcaatctggaggagaaattaaagagcaaaacgtaccgcggggatttcgtgcac
tctatggacgggaaagattttacttttgagtatgtgcaaagagaagctctcagagttcca
cttatcttcagaaataaggatggactgggaattaaaatgcctgacccggatttcaccgtc
agagatgtgaagctattagtgggaagccgtcgaatagtggatgtgatggatgtgaacacg
caaaaaggtgtggaaatgagcatgtcccagtttgtgaggtactatgaaacaccagaggcc
cagcgtgaaaaactctacaatgtcatcagcttggagttcagtcacacaaagctggagaac
attgtcaagcgtcccaatgtggtggacttagtcgactgggtggataatatgtggccacag
catttgaaggagagacagacagatgctaccaatgctatttcagagatgaaataccccaaa
gtgaaaaagtactgtttgatgagtgtgaaaggatgcttcactgatttccatattgatttt
ggaggcacttcagtgtggtatcacgttttccgtggggggaagatcttctggctgattcca
cctactctgcagaatctagaactttatgaagaatgggttctctcaggaaagcaaagtgat
atctttctgggagacagagtggaacgatgccaaagaattgaactgaaacaaggctataca
ttcttcattccttcagggtggatacatgcggtttatactccagtagattctctggtgttt
ggtggaaatatcctgcatagctttaatgttcccatgcagcttcgcatctatgaaattgag
gacagaacaagggtgcatgccaaattccgttatcctttctactatgaaatgtgctggtat
gttctggagagatacgtgtcctgtgtgacccagcgctgccacctcagcaaagagtaccag
aaagaatcaatgttaattgatgcaaagagaaaacgcagcatagacagctattcatcggat
tcgtggttagacatggatgaagaatcttgtgatgctcatatccgggaggaaaaggatgac
agcttggataagaactccaaatccctggtggatggctcctcctcacccaacagcacacat
tcagaaggaaaggagggtgcagggagaaaacaaaaagccacagtaatgaggtacctaaaa
agaactttgtctaatgagtcagatgacagtgtaaaatcaacgacccccacggattatccc
aaaacaccaacggggtctccagctacagaagtttcaaccaaatggactcacctcacagaa
tttgaactgaagggtttaaaagccctggtggaaaagcttgaatctctcccagagaacaag
aagtgtgttccagaaggcattgaggatccacaggctctcctggaggacatgaagaacatt
ctgaaagaacatgctgatgatgaccaaaatcttgcgatttcgggtgtccctgtggtcagc
tggcccaagaagaccccaaagaacagggcggtgggacggcccaaagggaagctgggcgct
gcctctgcggtgaagctcgcagctaaccggaccacggccggagcacgccggaggaggacg
cgatgccgcaagtgcgaggcgtgcctgcggacagagtgcggcgagtgtcacttctgcaaa
gacatgaagaagtttggggggcctggcaggatgaaacagtcctgcattatgaggcagtgt
atcgcaccggtgttgcctcatactgctgtatgtctggtgtgtggagaagctgggaaagag
gacactgtggaagaggaggagagcaagtttaatctcatgctaatggaatgctccatttgt
aatgaaataatacacccaggatgccttaaggtgaaggaatcagatggtgtggttaatgac
gagctgccgaactgctgggagtgtccaaagtgcaaccatgcagggaaaactggaaaagcg
tacaagcaaaagcgcggaccaggattcaaatacgcatcaaatctcccaggctcattgctg
aaggaacagaaaatgaacagagacaataaggaagtaacagatgctgcaaaacggaaaggg
gactgtgaagaaactcccaggcggaaatctgaggaacattccaaaaagcctcaagttgac
tcaattctgaggagaaagtcagacgaagtacatctgcggaggaaaaggaaatttgagaaa
ccccaggaaccctctatgagaaaacggcggcgatcgtggaaggcttcggatgagcggacc
gccctgctcaaacccctgcggcgcctcaaacaggagccggaggacgagctgccggaagca
cctccccggtccaaggacagcgaccagtcgcgatccagctcgcccaccgcgggtcccagc
acagagggggccgagcccagggacaagaagaagttcaagatgaggcggaaaaggcggctt
cccaataaggaactgagcaaggagctcagcaaggagctcaaccaagagatccaaaaaacc
gagaatagccttgccaatgagaatcaccaacccatcaaatctgaacccgagagcgaaaac
gaggaacccaagcgcgccttgaacaacagcgagagactccataggttcagcaaagggttg
aacgggactccccgggagctgaggcacccgctcatccccagcctgcggagcacgccgcgg
ggcatcgcccggcccccgccctcgctctcccctcccaaatgcattcagatggagcggcac
gtcatccggccgccccccatcagcccccctccggactctctccccctggatgatggggca
gcccacgtgatgcagagggaagtctggatggctgtctttagctacctcagtcatagagac
ttgtgcatctgtatgagagtttgcaagacctggaacagatggtgctgtgacaaaagatta
tggaccaaaatagatttaaaccattgtaaatccatcactccacttatgcttagtggcatt
attaggagacagcctgtaacccttgatcttagctggacaaatatatctaaaaagcagctg
agctggcttatcaacagactgccaggtcttcgagacctgctgttatcagggtgctcatgg
atagcagtgtcagcactttgtagttccagctgtcctttactccgaactctggacgtgcag
tgggcagaaggactgaaagacgctcagatgagagacctcctgtcaccgcccacagataac
cggccaggctgcaacgggtgtactttagagagtatggaaacactttcttccagttcaggg
aaggagcagttctgtgggtcatgccacattcgcccggatatcagctcaggtcagatcgac
aaccggagtaaactacggaacatcgttgaactgcgcttggccggcctggatattaccgat
gcgtctttgcggctgatcataaggcacatgcctctgctctccaaactcaatcttagttac
tgtaaccacgtgacagatcagtctattaacctgctgaccgcggttggaactaccacgcgg
gattcattaacggaaattaatttatcagactgcaataaggtgactgaccagtgcctgtcc
tacttcaaacgttgtggaaacatctgccagatcgacttgaggtactgcaagcaagtgaca
aaagaaggctgtgagcagttcatagcagagatgtcagtaagtgttcagtttgggcaagtg
gaagaaaaacttctgcaaaaactgagttag

  All links  
Gene (26)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   CGNC (1)   
   OC (1)   
Protein sequence (32)   
   RefSeq(pep) (32)   
DNA sequence (36)   
   RefSeq(nuc) (32)   
   GenBank (2)   
   EMBL (2)   
Protein domain (9)   
   Pfam (9)   
All databases (103)   

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