KEGG   Gallus gallus (chicken): 417143
Entry
417143            CDS       T01006                                 
Symbol
RXRA
Name
(RefSeq) retinoic acid receptor RXR-alpha isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
gga  Gallus gallus (chicken)
Pathway
gga03320  PPAR signaling pathway
gga04148  Efferocytosis
gga04920  Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:gga00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    417143 (RXRA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:gga03000]
    417143 (RXRA)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:gga03310]
    417143 (RXRA)
Transcription factors [BR:gga03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    417143 (RXRA)
Nuclear receptors [BR:gga03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   417143 (RXRA)
SSDB
Motif
Pfam: Hormone_recep Nuc_recep-AF1 zf-C4 tRNA_bind_3 CRT10
Other DBs
NCBI-GeneID: 417143
NCBI-ProteinID: XP_003642339
CGNC: 1890
UniProt: A0A1D5P2B5
Position
17:7577180..7655316
AA seq 467 aa
MDTKHFLPLDFSNQVNSTSLNSPTSRGPMATPSLHPSIGPGIGSSLGSPGQLHSPISTLS
SPINGMGPPFSVISSPMGPHSMSVPSTPSLGFGTSSPQLNSPMNPVSSSEDIKPPLGLNG
VLKVPAHPSGTMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNK
DCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKI
LEAELAVEPKTETYIEANMGLTPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLD
DQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVS
KMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRF
AKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq 1404 nt   +upstreamnt  +downstreamnt
atggacaccaaacacttcctgccactggatttctcaaaccaagtcaattccacatccctg
aactccccgacgagccgaggccccatggccaccccatccctgcacccgtccatcgggccg
ggcatcggctcctcgctgggctccccgggccagctgcactcacccatcagcaccctgagc
tcacccatcaatggcatggggccacccttctccgtcatcagctcccccatgggcccacac
tcgatgtctgtcccctccacgcccagcctgggattcggcaccagcagcccacagctcaac
tcacccatgaaccccgtcagcagctcagaagacatcaagccacccctggggctcaatgga
gtcctcaaagtgccagcacatccctcaggaacaatggcctccttcaccaagcacatatgt
gccatctgcggggacagatcttcaggtaaacattatggggtgtacagctgcgagggctgc
aaaggcttcttcaaacgcacggtgaggaaggacctgacctacacctgccgtgacaacaag
gactgcttgatcgacaagcgccagcgcaaccgctgccagtactgccgctaccagaagtgt
cttgccatggggatgaagagggaagctgtgcaggaggagaggcagcgggggaaggaccgc
aacgagaacgaggtggagtccacaagtagcgccaacgaggacatgcccgtggagaagatc
ctggaagcagaactcgctgtggagccaaagacagagacgtacattgaggcaaacatgggc
ctgacgccgagctcgcccaacgacccggtgacgaacatttgccaggcggccgacaagcag
ctcttcaccttggtggagtgggccaagaggatcccccatttctcagagctgcccctggat
gaccaggtcatcctgctgcgagcagggtggaatgagctcctcatcgcctccttctcccac
cgctccatagctgtgaaggatgggatcctgctggccacggggctgcacgtgcaccgcaac
agcgcgcacagcgccggtgtcggggccatctttgacagagtactgacagaactcgtgtcg
aagatgcgagacatgcagatggacaagacagagctgggctgcctgcgagccatcgtcctc
ttcaaccccgactcaaaaggtctctccaacccggctgaagtggaggcattacgggagaag
gtgtacgcatcgctggaggcgtattgcaagcacaaataccccgaccagcccgggaggttc
gccaagctcctgctccgtctgccagccctacggtccatcggcctcaaatgcctggagcac
ctcttcttcttcaagctaataggcgacacgccgatcgacaccttcttgatggaaatgctg
gaagcaccccatcaaatgacttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   CGNC (1)   
   OC (1)   
Protein sequence (7)   
   UniProt (1)   
   RefSeq(pep) (6)   
DNA sequence (6)   
   RefSeq(nuc) (6)   
Protein domain (5)   
   Pfam (5)   
All databases (38)   

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