KEGG   Gallus gallus (chicken): 417642
Entry
417642            CDS       T01006                                 
Symbol
BRIP1
Name
(RefSeq) Fanconi anemia group J protein homolog
  KO
K15362  fanconi anemia group J protein [EC:5.6.2.3]
Organism
gga  Gallus gallus (chicken)
Pathway
gga03440  Homologous recombination
gga03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:gga00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    417642 (BRIP1)
   03460 Fanconi anemia pathway
    417642 (BRIP1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gga03400]
    417642 (BRIP1)
Enzymes [BR:gga01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     417642 (BRIP1)
DNA repair and recombination proteins [BR:gga03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-B complex
     417642 (BRIP1)
   FA (Fanconi anemia) pathway
    Downstream FA components
     417642 (BRIP1)
SSDB
Motif
Pfam: DEAD_2 Helicase_C_2 DEAD ResIII nSTAND_NTPase5
Other DBs
NCBI-GeneID: 417642
NCBI-ProteinID: NP_001028230
CGNC: 3928
Ensembl: ENSGALG00000005279
UniProt: Q3YK19
Position
19:7967623..8085363
AA seq 1252 aa
MSSDVSQYTIGGVKIMFPCKAYPSQLAMMNAIVKGLNNRQHCLLESPTGSGKSLALLCSA
LSWQQSLYEKSLLKSSCEKEDREPAASLPCRCVCHSRSESSEATAGASHGAACSNNYETG
GSVKHGDQLSDTECKENNTLASKLSAKKRASACGNECDDFQVERKRIRPLETEQQVRKRH
CFSKEVQLVDALEVYNQRKNGELIVHSEKSVKNTSPQTLFSSCTECSCSSGKETRKDSGN
TKKKANGDQTFIPKIFFGTRTHKQIAQITRELKRTAYSGVPMTILSSRDYTCIHPVVSSS
NSNRNELCVELLEGKHGKSCLYYHGVHKLSEHYALQSAHNTYQAWDIEDLVSLGKKLRAC
PYFAARELMVGADIVFCPYNYLLDPQIRESMEINLKGQVVILDEAHNIEDSAREAVSYSV
TESQLNAAREELDFMVNNNIRQKDHEQLRAMCCSLTNWLRESSSQLVETGYETSCKVWSG
KEMLNHFHDMGITNISFPILQKHLSAVLEKEEKISMFGKEELVEIPIVSSATQIVLKGLF
MVLLYLFKDNSRFADDYRVALQQTYAWTNDNQPDVSDTSAFFTKTKHKRNLRHKTVVHML
NFWCLNPAVAFSDLNDVRTVVLTSGTLSPMDSFSSELGVKFSIQLEANHVIRNSQVWVGT
IGTGPNGRKLCATFQHTETFEFQDEVGALLLSVCQKVGQGILCFLPSYKLLDKLKDRWIH
TGLWRNLELVKTVIAEPQGGAKSDFDELLKIYYDAIKFKGEKDGALLIAVCRGKVSEGLD
FCDENARAVITIGIPFPNVKDLQVELKRKYNDQHKTTRGLLPGSQWYEIQAYRALNQALG
RCIRHRSDWGALILVDDRFRNNPNKYITGLSKWIRQQVQHHENFGSALESLHAFAERNQK
GIDFSSQCSNEVFHVPLNSKEPSSASQQEATIHLSPDVPVKSEEQSFVPETHLTTTINSI
NPGPSNQPGGQKVDVESCSHNGIQRRKHMDSTPRRPANKTEKKSDRTNSDFMKEHCCFKP
LTSTPLPVATNCVSTASSKQRKNVNSASELIGGVNQCQSSFTLEHKPSIPESHLETTNFS
VKSTEAPVAEEHLDEQKLQIEPCSELPSVGGRPELSVLEISAEDEDESLYFTPELYDDAE
SEEQEMRPLDPDENQIECGKPTVADDLFVISTSKTLSEPKEMINDDGRNTSLHGTMLSDI
SKNSTVNIEKMTNGEEAEQVESQEVDTKKRKISLSRSRNKGVSPFLLDSTST
NT seq 3759 nt   +upstreamnt  +downstreamnt
atgtcttctgatgtgtctcaatatactattgggggagtgaagattatgttcccttgcaag
gcttacccttcgcagcttgctatgatgaatgctatcgttaagggcttaaataacaggcag
cattgtttgttggagagccccacaggaagtggcaaaagcctggcgttactttgttctgca
ttatcatggcagcagtctctgtacgagaaatcactgctcaaatcatcatgtgaaaaggag
gacagggagccagcagcctcactgccgtgtcgctgtgtgtgtcattcccgatctgagagc
agcgaggcgactgcaggagcaagtcatggtgctgcatgttctaataattatgaaacagga
ggttctgtaaaacatggagaccaactatcagacacagaatgcaaggaaaacaatacccta
gcttcaaaattgtctgccaaaaaaagggcatctgcatgtggaaatgagtgtgatgatttt
caagtagagaggaagaggattcgtcctttagaaacagagcagcaggttagaaaacgtcat
tgcttttcaaaagaggtgcagctggttgatgctttagaagtttataatcagagaaaaaat
ggggagctgattgttcactctgaaaaaagtgtgaaaaacacttctccccaaacacttttc
agctcttgcacggagtgttcctgttcctctggaaaagaaactcgtaaagattctggtaac
acaaagaagaaagcaaatggagatcaaacattcattcccaaaatattttttggaacacga
acacacaaacaaattgcccagattaccagggagttgaagaggacagcgtattctggtgtc
cctatgacaattctctctagccgggattatacctgtattcatccagtggtgtccagtagt
aatagtaacaggaatgaactgtgtgtagaattactggaaggaaagcatggcaagtcctgt
ctttactatcatggtgttcataaactcagtgaacactatgccctacagtctgcacataac
acataccaggcttgggacattgaggatctagtgagcctgggaaagaagcttcgtgcctgt
ccatattttgcagccagagaactcatggtgggggcagatattgtattttgtccttataat
tatctcctagacccacagatacgggagagtatggaaattaacctgaaaggccaggtagtc
attttggatgaagcccataatattgaggacagtgctcgggaggcagtgagctacagtgtt
acagaaagtcaactaaacgctgctcgagaagagctagatttcatggtcaataacaacatc
aggcagaaggatcatgagcaactacgggctatgtgctgctctttgacaaactggctacgg
gaaagctctagtcagctggtagaaacagggtatgaaacctcctgtaaggtttggagtgga
aaagaaatgctcaaccattttcacgacatgggaataaccaatattagttttcccatttta
cagaaacacctttctgctgtcttggaaaaagaagaaaaaatatcaatgtttggtaaagag
gaacttgtcgagatacctattgtgagctctgccactcagattgtgctgaaagggttattc
atggttcttttatatctttttaaagataacagcaggtttgcagatgattacagagttgct
ttgcaacaaacttatgcttggacaaatgataaccaacctgatgtttcagataccagtgct
ttctttacaaagaccaaacataaaaggaatttgcgacataaaactgtagtccacatgctt
aatttttggtgcttgaatcctgctgtggctttttcagacctaaatgatgtcagaacagtt
gttctgacgtctggtacactctctccaatggattcattttcttccgaacttggtgtgaag
ttttctattcagctggaggcaaatcatgttatccggaactcacaggtttgggttggcacc
attggaacaggcccaaatggtcggaagctgtgtgccacgttccagcatacggagaccttt
gagttccaagatgaggtgggagcacttctgctttcagtgtgtcaaaaagttggccaagga
attttgtgctttttgccatcctataagctgttggacaaattgaaagatcgctggatacac
actggcttgtggagaaacctggagcttgttaagacagtcattgcagagcctcaaggagga
gcaaaaagtgacttcgatgaactgctgaaaatatactacgatgcaataaaatttaaagga
gaaaaagatggagcactcctaatagctgtgtgcagaggaaaagttagtgaaggcttggat
ttctgtgatgagaatgcccgagcagttataaccataggcattccgtttccaaatgtgaaa
gaccttcaggttgaattaaagaggaagtacaatgatcagcataaaactacaagaggcctt
ttaccagggagccagtggtatgaaatccaggcttacagggctctgaaccaggccctggga
aggtgtataaggcataggagtgattggggtgcccttatcttagttgatgaccggttccgg
aataaccctaacaagtacataactggattatctaaatggattcgtcaacaagtccagcat
catgaaaattttggtagtgcacttgaatccttacatgcatttgctgaaagaaaccagaaa
ggcattgatttttcgtcacagtgtagcaatgaagttttccatgtacctttaaattcaaaa
gagccgtcatcagcttctcaacaggaggcaactattcacctgtcaccagatgttcctgtt
aaaagtgaggagcaaagtttcgtcccagaaactcatttaactacaaccatcaactcaatt
aatcctggaccatcaaatcagccaggtggccagaaagttgatgtagagagttgttctcac
aatggaatacaaagaagaaaacatatggactccacacccagaaggcctgcaaataaaaca
gagaaaaagagtgatcggactaattctgattttatgaaagagcactgctgctttaaacca
ctgacttcaacacctttgcctgtagccacgaactgtgtgtccacagcaagcagcaaacaa
aggaagaatgtgaacagtgctagtgaacttattggtggtgtaaatcaatgccagtcatca
ttcactttagaacataaaccaagtataccagaatcacatttggaaacaactaatttttca
gtcaaaagtacagaggctccagttgctgaggagcatcttgatgagcaaaagcttcaaatt
gagccctgtagtgagcttccttcagtaggagggagacctgaactttcagtgttagaaata
tctgcagaagatgaggatgagagtctttatttcacaccagagctctatgatgatgcagaa
tctgaggaacaggaaatgagaccactagatccagatgagaatcagattgaatgtggaaaa
cccacagtagctgatgatctttttgtaatcagtacctcaaaaacactaagtgagccaaaa
gaaatgattaatgatgatggcagaaacacaagtttacatggaacaatgctgagtgatatc
agtaagaatagcacagttaatattgaaaagatgactaatggagaagaagcagagcaggta
gaatctcaagaggtggacaccaagaaacggaaaatcagtctttccagatcacgaaacaaa
ggtgtgtcaccttttttactggacagtactagcacatag

  All links  
Gene (36)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   CGNC (1)   
   OC (1)   
Protein sequence (10)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (8)   
DNA sequence (18)   
   RefSeq(nuc) (12)   
   GenBank (3)   
   EMBL (3)   
Protein domain (5)   
   Pfam (5)   
All databases (69)   

Download RDF
DBGET integrated database retrieval system